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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100839g1.439.mrna |
| Orig protein id | gnl|cribi|Naga_100839g1.439 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:322057..325664 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6001 ID=rna6001|Name=rna6001|organism=Nannochloropsis gaditana|type=mRNA|length=402bp
ATGGCAAATGCTTCAAGCTTTGGAAATGTGACGCGGAGGGACGTGACCGG
GATCGCCACCTTAGGCGAGGTCGGGGCCTCCTACACCGTCTACGAACGAA
ACTGGGCCTGCCCTAAGTGCAAGTTTGACAACTATGCGTCTCGGCCCAAG
TGCAGCCGCTGCCGCGCGAGCAAGCCCGAAGGCACCGAGCAGGTCATCCC
CTCCAGCCTCCCCTCCGCCGCGGGCTTGGACGGACTCTCCCCCTCGACCC
TCCCCGACACCTGGCACGCCTGGCGCGAGACGGTCGACGCGAGCACGCAG
CAGCTCTACTACTACCACACGCAGACGGGGGAGACCCGATGGGACAGGCC
CGCCGAGATGGGCGAGGCGCCCATGGCCTCTGGCTGGCCGGACCCGTGCT
GA back to topprotein sequence of rna6001 >rna6001-protein ID=rna6001-protein|Name=rna6001|organism=Nannochloropsis gaditana|type=polypeptide|length=663bp
MLASPPSKLGSGASTRSIRSTEGPLNSGVRALTLPQEWELDRIRRLMYEQ
ECLQLKNALALKSEELDEARQEKTRITKSFWEGRNRAVSLLQGLSVEVQQ
EKLRRRLGSGRNASTVSEAGCSLSGEGVASVAARVSGRGESTEGKGRLSP
SAASLSLASSASTMGAVAGGLDSASVSSLTSGSWGGEDMDMQALAALQEL
LSGWSPADPLAPSAARVALEKGDGERGKAGAKAQDVLKDQASRGEDLGSR
LEGRRLCFSCGEEGNAPLPSETSASPPSLQCSSSSSVDTAPLSESVIEVA
GLPAMVPGEGESKGGTKHAGPKEGEGEGREGAKEGGKEGVDVDLDVFKLK
RQACKLRDELAKRRFAELAVSVRLSETEEEVGRLRMKVEEKEALVESLLG
EVEEKNGRLLECMRRVQAFEVRLDAVVQERDEMLKRPAKGDGPGGEGNGW
EGAGGNEGAGGMEGGAEEGGTSVSGRKPGYVPPTETETSAGRVLEEGMPP
VWPVEGEEEVSMGWGVAVDDAEGVQREEEGGQGHAEGEEGKQALVDDLLS
LLVRGRALNGRGEEVIFETVRPRAFLIALALALLGILLSLSVFNSFVRYG
TDRAGAAPHLTSSPPPTSGTPSAPLSASPTFYTDAWTQSPLSRLTPGGPP
FGRGKSSPPAGST back to topmRNA from alignment at CM002467.1:322057..325664+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6001 ID=rna6001|Name=rna6001|organism=Nannochloropsis gaditana|type=mRNA|length=3608bp|location=Sequence derived from alignment at CM002467.1:322057..325664+ (Nannochloropsis gaditana)
GAGACACTCGATAAGGAAGAAGTTTCCGACACACGTTTcttgaaggaaaa
agagaatgaAAAAGTGTCGTGCTGGACTTTCGACAGTTTTAAAAATGGCT
CAAGACATCGGATTTTGTACTCCCAGAACATGGGCACATTCCTATGTTCA
TTGCATGAATTGAGTAGACGTGCACAGCTTCCATACCCCCGCTGATGCCC
CGTTTACCTCGCTCCAACGCGCGGGCGATAAAGCCTGCTATTGCCTGAGG
GTTCCACGACCCCGGCTATCCATAAGCCAGCCTGTCGAGCGCCGAAACGG
GCGTGGAAGATTTAAATGCCGTGGATCTGCAATTAGGGTGCCCTGCGCGC
TCGGCAGCTTTCTCTCTTGAATTCCCTCCATGCGaatgcctgcctcctcc
gtcctttgTCTTTCGCTCTTTCTGGGAGGGTGTTGCTTGAGTGCATAACT
GCACATACGCGACGTCGCACGCATGGTAGGCTTTCGCATGCTGTCTATGC
TGAATTTTACGTCTCGAGGCAGGGACAGAGTAGTGCCTGTCGGTGCTCAC
GGGATGTAGGTTGGACTGCGTGAATTCTTagctcttcccctcctgcgtgT
GCTGCATCTTcacctcaccttcctcatCATTGCCATTTGATGTTCCGACG
TGTCGGGTCGTCACTTCCCTCATTTTTGCGACGCATGCTTTTAGCATTGC
GTCGAGCGCCTCAAGGGCATGGACGCAATTTGCTGTACGGAGAGTCCAGC
ATTTAAACACACCGAGAAGGAGCAAAGCGGGCGCGGCCCACGGGTCGGTG
CAACCCGTCCCACATGCCTCTCTGTGCAACACCCCCATGTCCCCGCTCTC
ACACCTCCTCGATACTCACAGGCATGCTGGCGTCGCCTCCCAGTAAATTG
GGAAGTGGTGCCTCGACGCGGTCAATCCGCTCCACCGAAGGTCCTTTAAA
TTCGGGGGTGCGTGCGCTCACCTTGCCGCAAGAATGGGAATTGGACCGCA
TTCGGCGCTTGATGTACGAGCAGGAGTGTTTGCAACTCAAGAATGCGCTT
GCCCTTAAATCGGAGGAACTGGATGAGGCTCGGCAAGAAAAGACCCGCAT
CACAAAGAGCTTCTGGGAGGGACGAAATCGGGCCGTGAGTCTTCTGCAGG
GTCTGAGCGTGGAGGTCCAGCAGGAGAAGCTCCGGCGCCGGCTCGGCTCA
GGCCGCAACGCGAGCACCGTCTCCGAGGCTGGTTGCTCTCTCTCcggcga
gggcgtggcctCGGTGGCAGCGAGGGTCTCGGGCCGGGGGGAGAgtacgg
aggggaagggcaggctCTCGCcttcggccgcctccctctctctggcctcc
tccgcctccaccatgggcgccgtggcgggggggctCGATTCGGCCTCTGT
GAGCAGCCTGACAAGCGGGAgctggggtggggaggacatggacatGCAGG
CCCTGGCTGCGTTGCAAGAGCTCCTCAGCGGGTGGAGTCCCGCGGaccct
cttgctccctcgGCAGCCAGGGTCGCGCTTGAgaagggcgacggggagag
agggaaggcgggggcgaaggCGCAGGACGTGCTAAAGGACCAGGCGTCGC
GTGGAGAGGATTTGGGCTCGCgcctggaggggaggcggctgTGCTTTAGC
TGTGGTGAGGAAGGTaacgctcccctcccttcggagacctccgcctcccc
tccctccctccagtgctcctcttcctcctccgttgaCACAGCACCTTTGT
CCGAATCGGTGATTGAGGTCGCTGGGTTGCCGGCCATGGTgccgggcgag
ggcgagagcaagggagggacgaagcaCGCAGGgccaaaagaaggggaagg
ggaggggagggagggggcgaaggagggagggaaggagggcgtggacgtgg
aCCTGGACGTGTTCAAGCTGAAGCGCCAGGCGTGCAAGCTGCGGGACGAG
CTGGCCAAGCGACGGTTCGCGGAGCTAGCCGTGTCGGTCCGGCTGAgcga
gaccgaggaggaggtggggcggctgaggatgaaggtggaggagaaggagg
ccctggtggagagcctgctgggagaggtggaggagaagaacggGCGGCTC
TTGGAGTGCATGAGACGGGTGCAGGCGTTCGAGGTGCGCTTGGACGCGGT
GGTgcaagagagggacgagATGCTCAAGCGGCCCGCGAAAGGTGacgggc
cggggggggaaggaaatgggtgggagggggctggagggaacgagggcgcg
ggtgggatggagggcggggcggaggaagggggcacCTCTGTGTCAGGCCG
AAAGCCGGGGTATGTGCCGCCGACAGAGACCGAGACATCGGCCGGgaggg
tgctggaggaggggatgccACCAGTCTGgcccgtggagggagaggaggag
gtgtcgATGGGGTGGGGTGTTGCCGTGGACGACGCGGAGGGCGtgcaaag
ggaggaggaaggggggcaggggcacgcggagggcgaggaggggaagcagg
cccTGGTGGACGACCTCTTGTCTCTGCTTGTGCGGGGCCGGGCCCTGaac
gggcggggggaggaggtcattTTCGAGACGGTGCGGCCCAGGGCGTTTCT
CATCGCCCTGGCGCTGGCGCTCTTGGGgatccttctctccctctccgttt
TCAATTCCTTTGTCCGCTACGGCACGGACAGGGCCGGGGCCGCCCCGCAC
CtgacctcctcgccccccccgacgAGTGGGACGCCCTCGGCCCcgctttc
cgcctccccgaccTTCTACACCGACGCGTGGACGCAGAGCCCGCTCTCAC
GCCTCACCCCGGGGGGCCCCCCCTTCGGTCGGGGGaaatcctctcctcct
gcgggTTCAACCTGACTCGAGGCGacgaggcctccctcctcgcgcgctgt
ccccgtcctttcttcctctacATGCAGCCAGACGCGAACCTCGTCCTCTA
CCGAGGCCTCCACCCGTCCTTCCACCGAGGTCCAGTCTGGAGCACCCGCA
CCTTGGCCaagtggtggggggggggggcggagggaggcgtggggggcgAA
CGTGAGCGCCGTCCTAACAGGCACCCGGTCGCTGCGACtggtggaagagg
caggggcggagggcgggggggggcgggtgGTGTGGCAGCGGCGGGTGTGG
CGGTTGCCGCAGGAATTGACGCCGTGGCCCTTTGGGCGGGGGGCCATCTT
TGGATGAGcggggggagaaaggcgagAATATGTACAGTTTGCGGGACGCA
AGGGGGAGGCATGTTTTAGCGTTGTCCAGCGTGTACTTGTGCGGAAATGA
ATACCATTGAGGAACtgaaagaagagaagacATGTAGAAAGGCTGGGAAG
GCGATATGGGCAGGCGCGTCTGGTTTTAGAGGGAGCCCCGAGGGCACTAT
CCCGCGGCACGATGTCGCCCAGGCGGGAgtccaagggagggaaaggagag
gtgCGGGGGCGCGTGAAGGTGTCTGCGGCGCCTGGCACAAACGAGAATGT
GGCCAGCGGGAAGCTGGCGCGAGACCTTTGGGTCCGAAAGTAAAGCAAAG
CGACGAGAAAACCGACCCGCCtcatctttcctctccctatACACAGTGCG
TCCCCCCG back to topCoding sequence (CDS) from alignment at CM002467.1:322057..325664+ >rna6001 ID=rna6001|Name=rna6001|organism=Nannochloropsis gaditana|type=CDS|length=1992bp|location=Sequence derived from alignment at CM002467.1:322057..325664+ (Nannochloropsis gaditana)
ATGCTGGCGTCGCCTCCCAGTAAATTGGGAAGTGGTGCCTCGACGCGGTC
AATCCGCTCCACCGAAGGTCCTTTAAATTCGGGGGTGCGTGCGCTCACCT
TGCCGCAAGAATGGGAATTGGACCGCATTCGGCGCTTGATGTACGAGCAG
GAGTGTTTGCAACTCAAGAATGCGCTTGCCCTTAAATCGGAGGAACTGGA
TGAGGCTCGGCAAGAAAAGACCCGCATCACAAAGAGCTTCTGGGAGGGAC
GAAATCGGGCCGTGAGTCTTCTGCAGGGTCTGAGCGTGGAGGTCCAGCAG
GAGAAGCTCCGGCGCCGGCTCGGCTCAGGCCGCAACGCGAGCACCGTCTC
CGAGGCTGGTTGCTCTCTCTCcggcgagggcgtggcctCGGTGGCAGCGA
GGGTCTCGGGCCGGGGGGAGAgtacggaggggaagggcaggctCTCGCct
tcggccgcctccctctctctggcctcctccgcctccaccatgggcgccgt
ggcgggggggctCGATTCGGCCTCTGTGAGCAGCCTGACAAGCGGGAgct
ggggtggggaggacatggacatGCAGGCCCTGGCTGCGTTGCAAGAGCTC
CTCAGCGGGTGGAGTCCCGCGGaccctcttgctccctcgGCAGCCAGGGT
CGCGCTTGAgaagggcgacggggagagagggaaggcgggggcgaaggCGC
AGGACGTGCTAAAGGACCAGGCGTCGCGTGGAGAGGATTTGGGCTCGCgc
ctggaggggaggcggctgTGCTTTAGCTGTGGTGAGGAAGGTaacgctcc
cctcccttcggagacctccgcctcccctccctccctccagtgctcctctt
cctcctccgttgaCACAGCACCTTTGTCCGAATCGGTGATTGAGGTCGCT
GGGTTGCCGGCCATGGTgccgggcgagggcgagagcaagggagggacgaa
gcaCGCAGGgccaaaagaaggggaaggggaggggagggagggggcgaagg
agggagggaaggagggcgtggacgtggaCCTGGACGTGTTCAAGCTGAAG
CGCCAGGCGTGCAAGCTGCGGGACGAGCTGGCCAAGCGACGGTTCGCGGA
GCTAGCCGTGTCGGTCCGGCTGAgcgagaccgaggaggaggtggggcggc
tgaggatgaaggtggaggagaaggaggccctggtggagagcctgctggga
gaggtggaggagaagaacggGCGGCTCTTGGAGTGCATGAGACGGGTGCA
GGCGTTCGAGGTGCGCTTGGACGCGGTGGTgcaagagagggacgagATGC
TCAAGCGGCCCGCGAAAGGTGacgggccggggggggaaggaaatgggtgg
gagggggctggagggaacgagggcgcgggtgggatggagggcggggcgga
ggaagggggcacCTCTGTGTCAGGCCGAAAGCCGGGGTATGTGCCGCCGA
CAGAGACCGAGACATCGGCCGGgagggtgctggaggaggggatgccACCA
GTCTGgcccgtggagggagaggaggaggtgtcgATGGGGTGGGGTGTTGC
CGTGGACGACGCGGAGGGCGtgcaaagggaggaggaaggggggcaggggc
acgcggagggcgaggaggggaagcaggcccTGGTGGACGACCTCTTGTCT
CTGCTTGTGCGGGGCCGGGCCCTGaacgggcggggggaggaggtcattTT
CGAGACGGTGCGGCCCAGGGCGTTTCTCATCGCCCTGGCGCTGGCGCTCT
TGGGgatccttctctccctctccgtttTCAATTCCTTTGTCCGCTACGGC
ACGGACAGGGCCGGGGCCGCCCCGCACCtgacctcctcgccccccccgac
gAGTGGGACGCCCTCGGCCCcgctttccgcctccccgaccTTCTACACCG
ACGCGTGGACGCAGAGCCCGCTCTCACGCCTCACCCCGGGGGGCCCCCCC
TTCGGTCGGGGGaaatcctctcctcctgcgggTTCAACCTGA back to top
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