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Properties
Property Name | Value |
Product | dihydrolipoamide s-succinyltransferase |
Orig transcript id | gnl|cribi|Naga_101270g1.1586.mrna |
Orig protein id | gnl|cribi|Naga_101270g1.1586 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002467.1 | supercontig | CM002467.1:318275..319486 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5999 ID=rna5999|Name=rna5999|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp CCGGTAGCGGGTGATACCAGGGTAGAGAGGGGCAAGAAGGCTGTCGCGGT ACCTCGCTTTGAATCCATCCTGTTGACATCACCCACACCCACCTTCCTCC CCGGGGAAAACTTTCCCTCCAGCCGGCATGCTCACCCCCCCTTCTTGCCC CCCCCTCCCCCCTCCTTCCTTCAACCTATCCTTTATAGTGAGAACCATCT CCGCGCCCTTGTGGACCCAGACCTCTTCCAAAAACACGAGCAGAGGCTCA AGCTCCGCGCGCAGCCCTCCCTTCGCGAGTGCCCCGCCTGCCAGGCGGTG TGCGAGGGCGGTTCCAAGCGTCGCCCTCTCCTCGTCTGCGCCGCCTGCGG CCTCTCCTTTTGCTTCTTGCACGCCACCGCCCACCCCGTGGGGAAGGAGG GCGGTGCCGGCTGCCGCCGCTACCTCCGCCAGGTGGAAGCGACGGAGCGC GCATCCAAGACGACCGTCCGGCGCATCAGCAAGCCCTGCCCCAAGTGCAA GGCCCCCACGGAGAAGAATGGCGGCTGCAACCACATCTCCTGCGCCCAAT GTCGGCACGAATGGTGCTGGCTTTGCGAGCAGCGCTACACCCCCTACCAC TACTCTCCGACCAATATCTTTCTGGGCTGCCCGGGCGCCCAGTTTGTCGA CTTTGGAGGTGGCGCGCGAGGGTGCTGCTGCCGTCTCGGTGCCCCCCTCT GCCGCCTGCTCCGACTGCTCTTGGCGGGCATTTTGCTGCCCTTGCCCTTT GCCTTGGGCGTGGTCGTGGGTGTGGTCGGCACCGTGCTCTGGCTGCCAGT GGGGGTCCTGTGGGCCTGTCTGGGGAAGCTCCTGGCCACCTGCCCCTCGG GGATGCCCTGCTTTGCGGGGGAATGGAACGCGTGGGACCTATTGTTCCCC CTCGTGAGCGGATCGCACACATTTCGACAGAGGAACGGGGCCATGGGCTC AGTGTACGTCTTCGTCTTCCTGGGCGCGGCGCCGCTGGTGCTGGTGGCCT CCTTGGTCCTTCAGGTTCTCTGGATGCCTCTGGCCTTGCTGGTTTTGGTG ATACGAGCCTCGCGCCGACGTCGATTGCGCCCGTCCTTCGTGCTCGCCCC TATGCTCCTTATTACCCACTTCCTGGACCTCGACGGCGAGTAGAGCCCCG GGCGCTTTTCGACCTATTGCTCTCTTTGAGCGGAGAGCGTGGGAAGCCTT GGGTAGCACTGCCTGGGCACTGCACTTGTTAGGGCCTGCGGTGTGTCGGC TAATCAATTTTGCGTTGTACAGTCAGCATTCATGTAGCGGATACATTACG GCTGACGTGCGTCGCGGCGATCATGAAATTTTTTGTTCCACGTTGGCCAT GTTTACTCCAATCATACGTGTGATAAGAAATGTCACAGACACAGCATTGT ATGTCAAATAAGAGTCTGATCAAGCTGTGGGTCAGTTGCCATTTTGTAAA TCGTGAAAAGTAAGAACAAGCTGGTGGAGGAACGAC back to topprotein sequence of rna5999 >rna5999-protein ID=rna5999-protein|Name=rna5999|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp MMNAARMATKRRLLAFPPVAPKALAAAVDGALNTARNSGKLSSFPRPSKR VPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGE AVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDT QATASAPSSASAPSPPAPPTPGNPPPLPTRQTPPLPPQTPPPPTAPLSSS FWASAP back to topmRNA from alignment at CM002467.1:318275..319486+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5999 ID=rna5999|Name=rna5999|organism=Nannochloropsis gaditana|type=mRNA|length=1212bp|location=Sequence derived from alignment at CM002467.1:318275..319486+ (Nannochloropsis gaditana) aattccccttcctgtctcaTTCGCTGTCGCGAGCGAGGATTCCAACAAAA
CCCGCCAAGCTCTGTCATCGCAACGCCGGCATCTCTCTCATCCGCGCGCA
CAACTCTGGCTCAATAGAATACAcacagggagaagaggcgacATGATGAA
TGCGGCAAGGATGGCGACTAAAAGAAGGTTGCTGGCATTTCCTCCCGTTG
CACCCAAGGCGCTTGCGGCGGCTGTTGATGGTGCATTGAATACAGCGAGA
AATTCCGGGAAGCTGAGCagctttcctcgtccctcaaAACGTGTGCCAAG
ACAGCACTACAACGAGGCGTGCACACGTGCATTTCACGGTTCGGTGTCTC
TCCGCatggcggaggtggtgatgACGGTACCGAGGTCAGTCTTGAGGGAT
CAGGGGCTTGCGAGGTGAAGATGCATGTCTCGGGTCGACGCAAACCCTCA
CAGCACGAACCTTTCCCCGACCTGACAGCATGGGCGACTCAATTACTGAA
GGGACCATAAGGTCGTGGGAGAAAAAAGTCGGAGAAGCCGTGGCCTTAga
cgacgtggtggtggtaATCGAGACGGACAAAGTCTCGGTGGACATTCGGG
CTTCCAACTCGGGCGTTCTGGTCGAGCAATACGCGGCTGTCGACGATAAC
GTGGAGGTCGGTGCCAAACTCTTGAAGATCGATACGCAGGCCACCGCTTC
TGCTCCCAGCTCCGCTTCCGCCCCCAGCCCGccggcccctcccacgcccg
ggaacccccccccccttccaacgAGGCAaaccccgcccctccccccacag
acgccccccccgcccaccgcaCCCCTCTCATCAAGTTTCTGGGCAAGCGC
TCCttgatgaggaagcaggacAGCAGCGCACAGGccgccgcgcctcctcc
gcccgccaggtccccctctctccccgcacGGCATGAGGACTCGAGGAGCA
CGCCGGGTGTCAAGACCTTCATAGAGCTCCCGCCCAGATTCGGGCACCCA
CCcgtgaccgaggaggagatggaggcggtggagagtGGCGGGGCGACCCT
GTGAGCGTcgctcgaggaggggggcgtgagggagggagaaaggacagaCG
ACTGGGGTTGGGAGGGTAGAGGCAAAGGGGGAGCCTGGCGAAACACGGAG
AGAAACGACGGTTTTCGAGCGGATCATGCTACAAAGATTTCTTAGATTTT
GTTCCCGCAGTG back to topCoding sequence (CDS) from alignment at CM002467.1:318275..319486+ >rna5999 ID=rna5999|Name=rna5999|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002467.1:318275..319486+ (Nannochloropsis gaditana) ATGATGAATGCGGCAAGGATGGCGACTAAAAGAAGGTTGCTGGCATTTCC TCCCGTTGCACCCAAGGCGCTTGCGGCGGCTGTTGATGGTGCATTGAATA CAGCGAGAAATTCCGGGAAGCTGAGCagctttcctcgtccctcaaAACGT GTGCCAAGACAGCACTACAACGAGGCGTGCACACGTGCATTTCACGGTTC GGTGTCTCTCCGCatggcggaggtggtgatgACGGTACCGAGCATGGGCG ACTCAATTACTGAAGGGACCATAAGGTCGTGGGAGAAAAAAGTCGGAGAA GCCGTGGCCTTAgacgacgtggtggtggtaATCGAGACGGACAAAGTCTC GGTGGACATTCGGGCTTCCAACTCGGGCGTTCTGGTCGAGCAATACGCGG CTGTCGACGATAACGTGGAGGTCGGTGCCAAACTCTTGAAGATCGATACG CAGGCCACCGCTTCTGCTCCCAGCTCCGCTTCCGCCCCCAGCCCGccggc ccctcccacgcccgggaacccccccccccttccaacgAGGCAaaccccgc ccctccccccacagacgccccccccgcccaccgcaCCCCTCTCATCAAGT TTCTGGGCAAGCGCTCCttgaATGATGAATGCGGCAAGGATGGCGACTAA AAGAAGGTTGCTGGCATTTCCTCCCGTTGCACCCAAGGCGCTTGCGGCGG CTGTTGATGGTGCATTGAATACAGCGAGAAATTCCGGGAAGCTGAGCagc tttcctcgtccctcaaAACGTGTGCCAAGACAGCACTACAACGAGGCGTG CACACGTGCATTTCACGGTTCGGTGTCTCTCCGCatggcggaggtggtga tgACGGTACCGAGCATGGGCGACTCAATTACTGAAGGGACCATAAGGTCG TGGGAGAAAAAAGTCGGAGAAGCCGTGGCCTTAgacgacgtggtggtggt aATCGAGACGGACAAAGTCTCGGTGGACATTCGGGCTTCCAACTCGGGCG TTCTGGTCGAGCAATACGCGGCTGTCGACGATAACGTGGAGGTCGGTGCC AAACTCTTGAAGATCGATACGCAGGCCACCGCTTCTGCTCCCAGCTCCGC TTCCGCCCCCAGCCCGccggcccctcccacgcccgggaaccccccccccc ttccaacgAGGCAaaccccgcccctccccccacagacgccccccccgccc accgcaCCCCTCTCATCAAGTTTCTGGGCAAGCGCTCCttga back to top
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