EWM24690.1, cds5984 (CDS) Nannochloropsis gaditana

Overview
NameEWM24690.1
Unique Namecds5984
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:318417..318658 +
Alignment locationCM002467.1:318753..319131 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24690.1
Productdihydrolipoamide s-succinyltransferase
Orig transcript idgnl|cribi|Naga_101270g1.1586.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:318417..318658 +
CM002467.1supercontigCM002467.1:318753..319131 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
IPR0030162-oxoA_DH_lipoyl-BS
IPR000089Biotin_lipoyl
Homology
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|585106217|gb|EWM24690.1| (dihydrolipoamide s-succinyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 409.068 bits (1050), Expect = 2.287e-144
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
Query:    1 MMNAARMATKRRLLAFPPVAPKALAAAVDGALNTARNSGKLSSFPRPSKRVPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSASAPSPPAPPTPGNPPPLPTRQTPPLPPQTPPPPTAPLSSSFWASAP 206
            MMNAARMATKRRLLAFPPVAPKALAAAVDGALNTARNSGKLSSFPRPSKRVPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSASAPSPPAPPTPGNPPPLPTRQTPPLPPQTPPPPTAPLSSSFWASAP
Sbjct:    1 MMNAARMATKRRLLAFPPVAPKALAAAVDGALNTARNSGKLSSFPRPSKRVPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSASAPSPPAPPTPGNPPPLPTRQTPPLPPQTPPPPTAPLSSSFWASAP 206          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|1072233762|gb|OEU18492.1| (single hybrid motif-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 114.005 bits (284), Expect = 1.420e-27
Identity = 54/114 (47.37%), Postives = 80/114 (70.18%), Query Frame = 0
Query:   62 RAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATAS-----APSSASAPSPPAPPT 170
            R F  + ++ + +  M VPSMGDSITEGT+  W+ ++G+ V  DDV+ +IETDKV+VDI+A+ +GV+ +Q+  +DDNVEVGA L +IDT+  A+     APS+ +  +P AP T
Sbjct:   53 RNFVSATNIVLEKHTMKVPSMGDSITEGTLVEWQAQIGQKVEEDDVLALIETDKVTVDIKATKAGVITKQFGEIDDNVEVGADLYEIDTEGVATVEAAAAPSTTTEEAPAAPST 166          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|1210519199|dbj|GAX21930.1| (hypothetical protein FisN_40Hh021 [Fistulifera solaris])

HSP 1 Score: 102.834 bits (255), Expect = 1.185e-23
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 0
Query:   71 RMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATAS 155
            R  +  + VPSMGDSITEGTI  W  +VG+AV  DDVV ++ETDKV+V+I++  SGV+ +Q+ A+D+ VEVGA L +IDT A+AS
Sbjct:   25 RFDKRSIKVPSMGDSITEGTIVEWTAQVGQAVQADDVVALVETDKVTVEIKSEISGVITKQFGAIDETVEVGANLYEIDTDASAS 109          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|1210530850|dbj|GAX10551.1| (hypothetical protein FisN_40Lh021 [Fistulifera solaris])

HSP 1 Score: 99.3673 bits (246), Expect = 1.479e-22
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 0
Query:   82 MGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSASAPSPPAPPTPGNPPPL------PTRQTPPLPPQTPPPPTAPLSSSFWAS 204
            MGDSITEGTI  W  +VG+AV  DDV+ ++ETDKV+V+I+A  SGV+ + + A+D+ VEVGA L +IDT A+AS  +   +    +  T  N  P+      P  + P   P +  P    L    WA+
Sbjct:    1 MGDSITEGTIVEWTAQVGQAVQADDVIALVETDKVTVEIKAEISGVITKHFGAIDETVEVGADLYEIDTDASASVSTEGISKVESSKATNENDTPVAASASAPPLKVPTAKPTSRTPSIHFLGREGWAT 129          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|527102540|dbj|BAN66175.1| (dihydrolipoamide succinyltransferase, putative [Babesia bovis])

HSP 1 Score: 96.6709 bits (239), Expect = 1.054e-21
Identity = 59/147 (40.14%), Postives = 87/147 (59.18%), Query Frame = 0
Query:   41 LSSFPRPSKRVPRQHYNEACTRAFHGSVSLRMAEV-VMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSS------ASAPSPPAPPTPGNPPPLPTR 180
            LS  P     + R H N   +R+ H  VS  + EV  M +PS+GDSI+EGT+  W+K VGE+V +D+ + ++ETDKV+VDI ++ SGV+V+Q+  VDD V VG   + +D   +A+AP+       + +P P A      P P  TR
Sbjct:   26 LSKIPGGCGVLDR-HSNG--SRSLH--VSSTLLEVKTMKLPSLGDSISEGTLSEWKKNVGESVEVDEPIAIVETDKVTVDINSTLSGVIVKQHYEVDDTVLVGKPFIDVDAGGSAAAPAETASGVDSKSPEPVAEVKADEPAPTETR 167          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|585104790|gb|EWM23638.1| (dihydrolipoamide succinyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 101.679 bits (252), Expect = 1.282e-21
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 0
Query:   74 EVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSAS 161
            + ++ VPSMGDSITEGTI +W+KKVG+ V  DDV+VV+ETDKVSVD+RA  SG++ E   A DD V VG  L KIDT  TA+ P  A+
Sbjct:   82 DFILNVPSMGDSITEGTIVNWQKKVGDWVDADDVIVVLETDKVSVDVRAPRSGIITEVIGAEDDTVGVGVPLAKIDT--TAAKPEGAA 167          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|1173940988|gb|OQR90254.1| (hypothetical protein ACHHYP_05680 [Achlya hypogyna])

HSP 1 Score: 94.3597 bits (233), Expect = 1.980e-20
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   62 RAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSS 159
            R  H S    M E ++ VPSMGDSI+EGT+    K++GE V +D+VV+V+ETDKVSVD+ +  +G LV+Q+  +D +VEVG  L  ID    A+  SS
Sbjct:   15 RCLHSSAMRFMPEHIVKVPSMGDSISEGTVVDLRKQIGEHVNVDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDVKATVTSS 112          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|697887664|ref|XP_009689075.1| (dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor [Theileria orientalis strain Shintoku] >gi|403220641|dbj|BAM38774.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor [Theileria orientalis strain Shintoku])

HSP 1 Score: 98.2117 bits (243), Expect = 2.160e-20
Identity = 59/151 (39.07%), Postives = 83/151 (54.97%), Query Frame = 0
Query:   50 RVPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQA----TASAPSSASAPSPPAP-PTPGNPPP----LPTRQTPPLPPQTPP 191
            +V    YN      F G+        V+ VP++GDSI+EGT+  W K VG+ V +DDV+ V+ETDKV++D+ A  +GVLV+QY+   + + VG  L+++DT A     A  P  A     PAP P    PPP     P + T P  P+ PP
Sbjct:   48 KVVHLKYNNNNQPVFVGNRHFSKDVKVINVPTLGDSISEGTLTKWAKSVGDFVHVDDVIAVVETDKVTLDVNAPVAGVLVKQYSGAGETIFVGKPLVELDTSAKPPEKAPEPKEAPKAEEPAPKPFESKPPPKAESAPAKDTKPAAPKQPP 198          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|813143268|ref|XP_012199579.1| (hypothetical protein SPRG_05470 [Saprolegnia parasitica CBS 223.65] >gi|641535610|gb|KDO29513.1| hypothetical protein SPRG_05470 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 93.9745 bits (232), Expect = 2.480e-20
Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   61 TRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATAS 155
            +RA H S    M E ++ VPSMGDSI+EGT+   +K++G+ V +D+VV+V+ETDKVSVD+ +  +G LV+Q+  +D +VEVG  L  ID    A+
Sbjct:   16 SRALHSSAMRLMPEHIVKVPSMGDSISEGTVVDLKKQIGQHVEVDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDVKAT 110          
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|669144002|ref|XP_008607563.1| (hypothetical protein SDRG_03703 [Saprolegnia diclina VS20] >gi|530740497|gb|EQC38739.1| hypothetical protein SDRG_03703 [Saprolegnia diclina VS20])

HSP 1 Score: 94.3597 bits (233), Expect = 4.615e-20
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 0
Query:   60 CTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATAS 155
             +RA H S    M E ++ VPSMGDSI+EGT+   +K++G+ V +D+VV+V+ETDKVSVD+ +  +G LV+Q+  +D +VEVG  L  ID    A+
Sbjct:   51 SSRAIHSSAMRMMPEHIVKVPSMGDSISEGTVVDLKKQIGQHVEIDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDVKAT 146          
The following BLAST results are available for this feature:
BLAST of EWM24690.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106217|gb|EWM24690.1|2.287e-144100.00dihydrolipoamide s-succinyltransferase [Nannochlor... [more]
gi|1072233762|gb|OEU18492.1|1.420e-2747.37single hybrid motif-containing protein [Fragilario... [more]
gi|1210519199|dbj|GAX21930.1|1.185e-2356.47hypothetical protein FisN_40Hh021 [Fistulifera sol... [more]
gi|1210530850|dbj|GAX10551.1|1.479e-2241.09hypothetical protein FisN_40Lh021 [Fistulifera sol... [more]
gi|527102540|dbj|BAN66175.1|1.054e-2140.14dihydrolipoamide succinyltransferase, putative [Ba... [more]
gi|585104790|gb|EWM23638.1|1.282e-2159.09dihydrolipoamide succinyltransferase [Nannochlorop... [more]
gi|1173940988|gb|OQR90254.1|1.980e-2047.96hypothetical protein ACHHYP_05680 [Achlya hypogyna... [more]
gi|697887664|ref|XP_009689075.1|2.160e-2039.07dihydrolipoamide succinyltransferase component of ... [more]
gi|813143268|ref|XP_012199579.1|2.480e-2047.37hypothetical protein SPRG_05470 [Saprolegnia paras... [more]
gi|669144002|ref|XP_008607563.1|4.615e-2046.88hypothetical protein SDRG_03703 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5999rna5999Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications