EWM24690.1, cds5984 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|585106217|gb|EWM24690.1| (dihydrolipoamide s-succinyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 409.068 bits (1050), Expect = 2.287e-144 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 Query: 1 MMNAARMATKRRLLAFPPVAPKALAAAVDGALNTARNSGKLSSFPRPSKRVPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSASAPSPPAPPTPGNPPPLPTRQTPPLPPQTPPPPTAPLSSSFWASAP 206 MMNAARMATKRRLLAFPPVAPKALAAAVDGALNTARNSGKLSSFPRPSKRVPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSASAPSPPAPPTPGNPPPLPTRQTPPLPPQTPPPPTAPLSSSFWASAP Sbjct: 1 MMNAARMATKRRLLAFPPVAPKALAAAVDGALNTARNSGKLSSFPRPSKRVPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSASAPSPPAPPTPGNPPPLPTRQTPPLPPQTPPPPTAPLSSSFWASAP 206
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|1072233762|gb|OEU18492.1| (single hybrid motif-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 114.005 bits (284), Expect = 1.420e-27 Identity = 54/114 (47.37%), Postives = 80/114 (70.18%), Query Frame = 0 Query: 62 RAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATAS-----APSSASAPSPPAPPT 170 R F + ++ + + M VPSMGDSITEGT+ W+ ++G+ V DDV+ +IETDKV+VDI+A+ +GV+ +Q+ +DDNVEVGA L +IDT+ A+ APS+ + +P AP T Sbjct: 53 RNFVSATNIVLEKHTMKVPSMGDSITEGTLVEWQAQIGQKVEEDDVLALIETDKVTVDIKATKAGVITKQFGEIDDNVEVGADLYEIDTEGVATVEAAAAPSTTTEEAPAAPST 166
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|1210519199|dbj|GAX21930.1| (hypothetical protein FisN_40Hh021 [Fistulifera solaris]) HSP 1 Score: 102.834 bits (255), Expect = 1.185e-23 Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 0 Query: 71 RMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATAS 155 R + + VPSMGDSITEGTI W +VG+AV DDVV ++ETDKV+V+I++ SGV+ +Q+ A+D+ VEVGA L +IDT A+AS Sbjct: 25 RFDKRSIKVPSMGDSITEGTIVEWTAQVGQAVQADDVVALVETDKVTVEIKSEISGVITKQFGAIDETVEVGANLYEIDTDASAS 109
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|1210530850|dbj|GAX10551.1| (hypothetical protein FisN_40Lh021 [Fistulifera solaris]) HSP 1 Score: 99.3673 bits (246), Expect = 1.479e-22 Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 0 Query: 82 MGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSASAPSPPAPPTPGNPPPL------PTRQTPPLPPQTPPPPTAPLSSSFWAS 204 MGDSITEGTI W +VG+AV DDV+ ++ETDKV+V+I+A SGV+ + + A+D+ VEVGA L +IDT A+AS + + + T N P+ P + P P + P L WA+ Sbjct: 1 MGDSITEGTIVEWTAQVGQAVQADDVIALVETDKVTVEIKAEISGVITKHFGAIDETVEVGADLYEIDTDASASVSTEGISKVESSKATNENDTPVAASASAPPLKVPTAKPTSRTPSIHFLGREGWAT 129
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|527102540|dbj|BAN66175.1| (dihydrolipoamide succinyltransferase, putative [Babesia bovis]) HSP 1 Score: 96.6709 bits (239), Expect = 1.054e-21 Identity = 59/147 (40.14%), Postives = 87/147 (59.18%), Query Frame = 0 Query: 41 LSSFPRPSKRVPRQHYNEACTRAFHGSVSLRMAEV-VMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSS------ASAPSPPAPPTPGNPPPLPTR 180 LS P + R H N +R+ H VS + EV M +PS+GDSI+EGT+ W+K VGE+V +D+ + ++ETDKV+VDI ++ SGV+V+Q+ VDD V VG + +D +A+AP+ + +P P A P P TR Sbjct: 26 LSKIPGGCGVLDR-HSNG--SRSLH--VSSTLLEVKTMKLPSLGDSISEGTLSEWKKNVGESVEVDEPIAIVETDKVTVDINSTLSGVIVKQHYEVDDTVLVGKPFIDVDAGGSAAAPAETASGVDSKSPEPVAEVKADEPAPTETR 167
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|585104790|gb|EWM23638.1| (dihydrolipoamide succinyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 101.679 bits (252), Expect = 1.282e-21 Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 0 Query: 74 EVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSSAS 161 + ++ VPSMGDSITEGTI +W+KKVG+ V DDV+VV+ETDKVSVD+RA SG++ E A DD V VG L KIDT TA+ P A+ Sbjct: 82 DFILNVPSMGDSITEGTIVNWQKKVGDWVDADDVIVVLETDKVSVDVRAPRSGIITEVIGAEDDTVGVGVPLAKIDT--TAAKPEGAA 167
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|1173940988|gb|OQR90254.1| (hypothetical protein ACHHYP_05680 [Achlya hypogyna]) HSP 1 Score: 94.3597 bits (233), Expect = 1.980e-20 Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0 Query: 62 RAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATASAPSS 159 R H S M E ++ VPSMGDSI+EGT+ K++GE V +D+VV+V+ETDKVSVD+ + +G LV+Q+ +D +VEVG L ID A+ SS Sbjct: 15 RCLHSSAMRFMPEHIVKVPSMGDSISEGTVVDLRKQIGEHVNVDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDVKATVTSS 112
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|697887664|ref|XP_009689075.1| (dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor [Theileria orientalis strain Shintoku] >gi|403220641|dbj|BAM38774.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor [Theileria orientalis strain Shintoku]) HSP 1 Score: 98.2117 bits (243), Expect = 2.160e-20 Identity = 59/151 (39.07%), Postives = 83/151 (54.97%), Query Frame = 0 Query: 50 RVPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQA----TASAPSSASAPSPPAP-PTPGNPPP----LPTRQTPPLPPQTPP 191 +V YN F G+ V+ VP++GDSI+EGT+ W K VG+ V +DDV+ V+ETDKV++D+ A +GVLV+QY+ + + VG L+++DT A A P A PAP P PPP P + T P P+ PP Sbjct: 48 KVVHLKYNNNNQPVFVGNRHFSKDVKVINVPTLGDSISEGTLTKWAKSVGDFVHVDDVIAVVETDKVTLDVNAPVAGVLVKQYSGAGETIFVGKPLVELDTSAKPPEKAPEPKEAPKAEEPAPKPFESKPPPKAESAPAKDTKPAAPKQPP 198
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|813143268|ref|XP_012199579.1| (hypothetical protein SPRG_05470 [Saprolegnia parasitica CBS 223.65] >gi|641535610|gb|KDO29513.1| hypothetical protein SPRG_05470 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 93.9745 bits (232), Expect = 2.480e-20 Identity = 45/95 (47.37%), Postives = 66/95 (69.47%), Query Frame = 0 Query: 61 TRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATAS 155 +RA H S M E ++ VPSMGDSI+EGT+ +K++G+ V +D+VV+V+ETDKVSVD+ + +G LV+Q+ +D +VEVG L ID A+ Sbjct: 16 SRALHSSAMRLMPEHIVKVPSMGDSISEGTVVDLKKQIGQHVEVDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDVKAT 110
BLAST of EWM24690.1 vs. NCBI_GenBank
Match: gi|669144002|ref|XP_008607563.1| (hypothetical protein SDRG_03703 [Saprolegnia diclina VS20] >gi|530740497|gb|EQC38739.1| hypothetical protein SDRG_03703 [Saprolegnia diclina VS20]) HSP 1 Score: 94.3597 bits (233), Expect = 4.615e-20 Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 0 Query: 60 CTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQATAS 155 +RA H S M E ++ VPSMGDSI+EGT+ +K++G+ V +D+VV+V+ETDKVSVD+ + +G LV+Q+ +D +VEVG L ID A+ Sbjct: 51 SSRAIHSSAMRMMPEHIVKVPSMGDSISEGTVVDLKKQIGQHVEIDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDVKAT 146 The following BLAST results are available for this feature:
BLAST of EWM24690.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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