|
|
Properties
| Property Name | Value |
|---|
| Product | dihydrolipoamide s-succinyltransferase |
| Orig transcript id | gnl|cribi|Naga_101270g1.1586.mrna |
| Orig protein id | gnl|cribi|Naga_101270g1.1586 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:318275..319486 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5999 ID=rna5999|Name=rna5999|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp
CCGGTAGCGGGTGATACCAGGGTAGAGAGGGGCAAGAAGGCTGTCGCGGT
ACCTCGCTTTGAATCCATCCTGTTGACATCACCCACACCCACCTTCCTCC
CCGGGGAAAACTTTCCCTCCAGCCGGCATGCTCACCCCCCCTTCTTGCCC
CCCCCTCCCCCCTCCTTCCTTCAACCTATCCTTTATAGTGAGAACCATCT
CCGCGCCCTTGTGGACCCAGACCTCTTCCAAAAACACGAGCAGAGGCTCA
AGCTCCGCGCGCAGCCCTCCCTTCGCGAGTGCCCCGCCTGCCAGGCGGTG
TGCGAGGGCGGTTCCAAGCGTCGCCCTCTCCTCGTCTGCGCCGCCTGCGG
CCTCTCCTTTTGCTTCTTGCACGCCACCGCCCACCCCGTGGGGAAGGAGG
GCGGTGCCGGCTGCCGCCGCTACCTCCGCCAGGTGGAAGCGACGGAGCGC
GCATCCAAGACGACCGTCCGGCGCATCAGCAAGCCCTGCCCCAAGTGCAA
GGCCCCCACGGAGAAGAATGGCGGCTGCAACCACATCTCCTGCGCCCAAT
GTCGGCACGAATGGTGCTGGCTTTGCGAGCAGCGCTACACCCCCTACCAC
TACTCTCCGACCAATATCTTTCTGGGCTGCCCGGGCGCCCAGTTTGTCGA
CTTTGGAGGTGGCGCGCGAGGGTGCTGCTGCCGTCTCGGTGCCCCCCTCT
GCCGCCTGCTCCGACTGCTCTTGGCGGGCATTTTGCTGCCCTTGCCCTTT
GCCTTGGGCGTGGTCGTGGGTGTGGTCGGCACCGTGCTCTGGCTGCCAGT
GGGGGTCCTGTGGGCCTGTCTGGGGAAGCTCCTGGCCACCTGCCCCTCGG
GGATGCCCTGCTTTGCGGGGGAATGGAACGCGTGGGACCTATTGTTCCCC
CTCGTGAGCGGATCGCACACATTTCGACAGAGGAACGGGGCCATGGGCTC
AGTGTACGTCTTCGTCTTCCTGGGCGCGGCGCCGCTGGTGCTGGTGGCCT
CCTTGGTCCTTCAGGTTCTCTGGATGCCTCTGGCCTTGCTGGTTTTGGTG
ATACGAGCCTCGCGCCGACGTCGATTGCGCCCGTCCTTCGTGCTCGCCCC
TATGCTCCTTATTACCCACTTCCTGGACCTCGACGGCGAGTAGAGCCCCG
GGCGCTTTTCGACCTATTGCTCTCTTTGAGCGGAGAGCGTGGGAAGCCTT
GGGTAGCACTGCCTGGGCACTGCACTTGTTAGGGCCTGCGGTGTGTCGGC
TAATCAATTTTGCGTTGTACAGTCAGCATTCATGTAGCGGATACATTACG
GCTGACGTGCGTCGCGGCGATCATGAAATTTTTTGTTCCACGTTGGCCAT
GTTTACTCCAATCATACGTGTGATAAGAAATGTCACAGACACAGCATTGT
ATGTCAAATAAGAGTCTGATCAAGCTGTGGGTCAGTTGCCATTTTGTAAA
TCGTGAAAAGTAAGAACAAGCTGGTGGAGGAACGAC back to topprotein sequence of rna5999 >rna5999-protein ID=rna5999-protein|Name=rna5999|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MMNAARMATKRRLLAFPPVAPKALAAAVDGALNTARNSGKLSSFPRPSKR
VPRQHYNEACTRAFHGSVSLRMAEVVMTVPSMGDSITEGTIRSWEKKVGE
AVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDT
QATASAPSSASAPSPPAPPTPGNPPPLPTRQTPPLPPQTPPPPTAPLSSS
FWASAP back to topmRNA from alignment at CM002467.1:318275..319486+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5999 ID=rna5999|Name=rna5999|organism=Nannochloropsis gaditana|type=mRNA|length=1212bp|location=Sequence derived from alignment at CM002467.1:318275..319486+ (Nannochloropsis gaditana)
aattccccttcctgtctcaTTCGCTGTCGCGAGCGAGGATTCCAACAAAA
CCCGCCAAGCTCTGTCATCGCAACGCCGGCATCTCTCTCATCCGCGCGCA
CAACTCTGGCTCAATAGAATACAcacagggagaagaggcgacATGATGAA
TGCGGCAAGGATGGCGACTAAAAGAAGGTTGCTGGCATTTCCTCCCGTTG
CACCCAAGGCGCTTGCGGCGGCTGTTGATGGTGCATTGAATACAGCGAGA
AATTCCGGGAAGCTGAGCagctttcctcgtccctcaaAACGTGTGCCAAG
ACAGCACTACAACGAGGCGTGCACACGTGCATTTCACGGTTCGGTGTCTC
TCCGCatggcggaggtggtgatgACGGTACCGAGGTCAGTCTTGAGGGAT
CAGGGGCTTGCGAGGTGAAGATGCATGTCTCGGGTCGACGCAAACCCTCA
CAGCACGAACCTTTCCCCGACCTGACAGCATGGGCGACTCAATTACTGAA
GGGACCATAAGGTCGTGGGAGAAAAAAGTCGGAGAAGCCGTGGCCTTAga
cgacgtggtggtggtaATCGAGACGGACAAAGTCTCGGTGGACATTCGGG
CTTCCAACTCGGGCGTTCTGGTCGAGCAATACGCGGCTGTCGACGATAAC
GTGGAGGTCGGTGCCAAACTCTTGAAGATCGATACGCAGGCCACCGCTTC
TGCTCCCAGCTCCGCTTCCGCCCCCAGCCCGccggcccctcccacgcccg
ggaacccccccccccttccaacgAGGCAaaccccgcccctccccccacag
acgccccccccgcccaccgcaCCCCTCTCATCAAGTTTCTGGGCAAGCGC
TCCttgatgaggaagcaggacAGCAGCGCACAGGccgccgcgcctcctcc
gcccgccaggtccccctctctccccgcacGGCATGAGGACTCGAGGAGCA
CGCCGGGTGTCAAGACCTTCATAGAGCTCCCGCCCAGATTCGGGCACCCA
CCcgtgaccgaggaggagatggaggcggtggagagtGGCGGGGCGACCCT
GTGAGCGTcgctcgaggaggggggcgtgagggagggagaaaggacagaCG
ACTGGGGTTGGGAGGGTAGAGGCAAAGGGGGAGCCTGGCGAAACACGGAG
AGAAACGACGGTTTTCGAGCGGATCATGCTACAAAGATTTCTTAGATTTT
GTTCCCGCAGTG back to topCoding sequence (CDS) from alignment at CM002467.1:318275..319486+ >rna5999 ID=rna5999|Name=rna5999|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002467.1:318275..319486+ (Nannochloropsis gaditana)
ATGATGAATGCGGCAAGGATGGCGACTAAAAGAAGGTTGCTGGCATTTCC
TCCCGTTGCACCCAAGGCGCTTGCGGCGGCTGTTGATGGTGCATTGAATA
CAGCGAGAAATTCCGGGAAGCTGAGCagctttcctcgtccctcaaAACGT
GTGCCAAGACAGCACTACAACGAGGCGTGCACACGTGCATTTCACGGTTC
GGTGTCTCTCCGCatggcggaggtggtgatgACGGTACCGAGCATGGGCG
ACTCAATTACTGAAGGGACCATAAGGTCGTGGGAGAAAAAAGTCGGAGAA
GCCGTGGCCTTAgacgacgtggtggtggtaATCGAGACGGACAAAGTCTC
GGTGGACATTCGGGCTTCCAACTCGGGCGTTCTGGTCGAGCAATACGCGG
CTGTCGACGATAACGTGGAGGTCGGTGCCAAACTCTTGAAGATCGATACG
CAGGCCACCGCTTCTGCTCCCAGCTCCGCTTCCGCCCCCAGCCCGccggc
ccctcccacgcccgggaacccccccccccttccaacgAGGCAaaccccgc
ccctccccccacagacgccccccccgcccaccgcaCCCCTCTCATCAAGT
TTCTGGGCAAGCGCTCCttgaATGATGAATGCGGCAAGGATGGCGACTAA
AAGAAGGTTGCTGGCATTTCCTCCCGTTGCACCCAAGGCGCTTGCGGCGG
CTGTTGATGGTGCATTGAATACAGCGAGAAATTCCGGGAAGCTGAGCagc
tttcctcgtccctcaaAACGTGTGCCAAGACAGCACTACAACGAGGCGTG
CACACGTGCATTTCACGGTTCGGTGTCTCTCCGCatggcggaggtggtga
tgACGGTACCGAGCATGGGCGACTCAATTACTGAAGGGACCATAAGGTCG
TGGGAGAAAAAAGTCGGAGAAGCCGTGGCCTTAgacgacgtggtggtggt
aATCGAGACGGACAAAGTCTCGGTGGACATTCGGGCTTCCAACTCGGGCG
TTCTGGTCGAGCAATACGCGGCTGTCGACGATAACGTGGAGGTCGGTGCC
AAACTCTTGAAGATCGATACGCAGGCCACCGCTTCTGCTCCCAGCTCCGC
TTCCGCCCCCAGCCCGccggcccctcccacgcccgggaaccccccccccc
ttccaacgAGGCAaaccccgcccctccccccacagacgccccccccgccc
accgcaCCCCTCTCATCAAGTTTCTGGGCAAGCGCTCCttga back to top
|