EWM24702.1, cds5979 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|585106230|gb|EWM24702.1| (photosystem ii 12 kda extrinsic protein [Nannochloropsis gaditana]) HSP 1 Score: 451.825 bits (1161), Expect = 8.029e-161 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 Query: 1 MGPLSWKTPIHLCHQMAFMAQLQATCIRVHAILRNLSSYGFKFTGTHFLPMHYPPSTTSRPHLSHTMKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 MGPLSWKTPIHLCHQMAFMAQLQATCIRVHAILRNLSSYGFKFTGTHFLPMHYPPSTTSRPHLSHTMKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR Sbjct: 1 MGPLSWKTPIHLCHQMAFMAQLQATCIRVHAILRNLSSYGFKFTGTHFLPMHYPPSTTSRPHLSHTMKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|873229913|emb|CEM11926.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 153.295 bits (386), Expect = 9.875e-44 Identity = 79/165 (47.88%), Postives = 106/165 (64.24%), Query Frame = 0 Query: 67 MKSIIALLL--AAPALAFMPPTPAPQRTEV-------IMSASRDWKKDLAKAAFVVMPMVA-----PLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 MK++IAL L A A A++ P P +M+ + + A + +P+ A P A A DY+GVGYLGG+EKID+NNANVRVY R PGMYPT+ K+ +GPY++V D+YSI GL+E+EK +LKKYES F+ L+P EYT+D+ NNGLYR Sbjct: 1 MKAVIALALSFALCAEAYVLPAQRPTSLRRQGATSLRMMAEDGEVSRRNALMSIASLPLAAALFATPFAAEAVRDYDGVGYLGGAEKIDLNNANVRVYQRLPGMYPTLGAKLAKNGPYQNVKDVYSIKGLSEREKELLKKYESDFVVLQPREEYTVDKFNNGLYR 165
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|397628898|gb|EJK69097.1| (hypothetical protein THAOC_09685 [Thalassiosira oceanica]) HSP 1 Score: 150.984 bits (380), Expect = 4.925e-43 Identity = 81/152 (53.29%), Postives = 99/152 (65.13%), Query Frame = 0 Query: 67 MKSIIALLLAAPALAFMP-PTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 MK+ I L + A AF P PA Q ++A ++ AA P A A++DYE V YLGG +DVNNANVR Y R PGMYP+ AGKIV+HGPYKSVAD+Y+I GLT EK ++KKYESKF+ +PA EY IDR+NNGLYR Sbjct: 1 MKTAIIATLISTAAAFAPNAQPAAQ---TALNAEAADRRSFLGAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGMYPSAAGKIVTHGPYKSVADVYNIPGLTSAEKEVIKKYESKFVAKDPAAEYVIDRVNNGLYR 149
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|676395339|ref|XP_009040947.1| (hypothetical protein AURANDRAFT_32656 [Aureococcus anophagefferens] >gi|323448492|gb|EGB04390.1| hypothetical protein AURANDRAFT_32656 [Aureococcus anophagefferens]) HSP 1 Score: 147.132 bits (370), Expect = 1.023e-41 Identity = 65/94 (69.15%), Postives = 79/94 (84.04%), Query Frame = 0 Query: 124 AKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 A DY G+ YLGGS KID+NNAN+RVY++ PGMYP AGKI S+GPYKSV+D+Y+I GL + EK+ +KKYES+FITLEPAP Y IDR+NNGLYR Sbjct: 44 ADTDYAGLPYLGGSSKIDINNANIRVYAKLPGMYPGAAGKIASNGPYKSVSDVYNIKGLKDAEKAAIKKYESRFITLEPAPMYVIDRMNNGLYR 137
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|1210519407|dbj|GAX21791.1| (photosystem II PsbU protein [Fistulifera solaris]) HSP 1 Score: 147.132 bits (370), Expect = 1.588e-41 Identity = 82/151 (54.30%), Postives = 104/151 (68.87%), Query Frame = 0 Query: 67 MKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 MK I L A AF+ TP+ +R V + A R ++ A + AP+ A A DY+ VGYLGGSE +DVNNANVRVY + PG+YPTVAGKI ++GPYKSV DLY+I GL+ +EK ++KKYES+F LEP+ +Y IDRINNGLYR Sbjct: 1 MKLAIFAALFTAASAFV--TPSAERPSVALQAER---REFLSALAGAAALAAPMAANAVRDYDNVGYLGGSEIVDVNNANVRVYLKMPGLYPTVAGKIATNGPYKSVGDLYNIPGLSGKEKELIKKYESRFTALEPSADYVIDRINNGLYR 146
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|1210530546|dbj|GAX10873.1| (photosystem II PsbU protein [Fistulifera solaris]) HSP 1 Score: 146.747 bits (369), Expect = 2.322e-41 Identity = 76/132 (57.58%), Postives = 97/132 (73.48%), Query Frame = 0 Query: 86 TPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 TP+ +R V + A R ++ A + AP+ A A DY+ VGYLGGSE +DVNNANVRVY + PG+YPTVAGKI ++GPYKSVADLY+I GL+ +EK ++KKYES+F LEP+ +Y IDRINNGLYR Sbjct: 18 TPSAERASVALQAER---REFLSALAGAAALAAPMAANAVRDYDNVGYLGGSEIVDVNNANVRVYLKMPGLYPTVAGKIATNGPYKSVADLYNIPGLSGKEKELIKKYESRFTALEPSADYVIDRINNGLYR 146
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|75243477|sp|Q84XB6.1|PSBU_PHATR (RecName: Full=Photosystem II 12 kDa extrinsic protein, chloroplastic; AltName: Full=PS II complex 12 kDa extrinsic protein; AltName: Full=PSII-U; Flags: Precursor >gi|28565369|gb|AAO43195.1| photosystem II 12 kDa extrinsic protein precursor [Phaeodactylum tricornutum]) HSP 1 Score: 145.591 bits (366), Expect = 5.952e-41 Identity = 76/151 (50.33%), Postives = 99/151 (65.56%), Query Frame = 0 Query: 67 MKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 MK + +L + AF+ P + ++A R ++ AA V + PL A A DYE VGYLGGSE +DVNNANVRVY + PG+YPT+AGKI S+GPY +V DLY+I GL+ +EK +LKKYES+F +P +Y IDR NNGLYR Sbjct: 1 MKLAVFAVLISTVAAFVAPNGVQRAATTELNAER---REFLSAAAVAAGLAFPLTANAIRDYENVGYLGGSEIVDVNNANVRVYLKMPGLYPTLAGKIASNGPYNAVGDLYNIPGLSGKEKELLKKYESRFTAQKPQADYVIDRFNNGLYR 148
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|219115141|ref|XP_002178366.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410101|gb|EEC50031.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 144.436 bits (363), Expect = 1.764e-40 Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 0 Query: 67 MKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 MK + +L + +F+ P + ++A R ++ AA V + PL A A DYE VGYLGGSE +DVNNANVRVY + PG+YPT+AGKI S+GPY +V DLY+I GL+ +EK +LKKYES+F +P +Y IDR NNGLYR Sbjct: 1 MKLAVFAVLISTVASFVAPNGVQRAATTELNAER---REFLSAAAVAAGLAFPLTANAIRDYENVGYLGGSEIVDVNNANVRVYLKMPGLYPTLAGKIASNGPYNAVGDLYNIPGLSGKEKELLKKYESRFTAQKPQADYVIDRFNNGLYR 148
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|223996703|ref|XP_002288025.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977141|gb|EED95468.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 143.665 bits (361), Expect = 3.855e-40 Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 0 Query: 126 IDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 +DYE V LGGS+ +D+NNANVR Y R PGMYP AGKIV+HGPYKSVAD+Y+I GLT EK ++KKYES+F APEY IDRINNGLYR Sbjct: 57 VDYENVALLGGSQTVDLNNANVRAYLRMPGMYPAAAGKIVTHGPYKSVADVYNIPGLTNAEKEVIKKYESRFTAKAVAPEYAIDRINNGLYR 148
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|551673122|ref|XP_005839317.1| (hypothetical protein GUITHDRAFT_65512 [Guillardia theta CCMP2712] >gi|428183479|gb|EKX52337.1| hypothetical protein GUITHDRAFT_65512 [Guillardia theta CCMP2712]) HSP 1 Score: 140.584 bits (353), Expect = 2.338e-39 Identity = 68/124 (54.84%), Postives = 90/124 (72.58%), Query Frame = 0 Query: 96 MSASRDWKKDLAK--AAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217 M A ++DL K AAF V AP++A A+IDY V +LGGS+KID+NNANVRVY++ PGMYPT+AG I +GPY++V DLY + L+ ++K I+KKYE + L+PAPEY D+ NNGLYR Sbjct: 1 MQADGLSRRDLIKNVAAFGVA--AAPVLANAEIDYANVPFLGGSDKIDINNANVRVYTKLPGMYPTIAGIICKYGPYQTVEDLYKVPSLSAEQKQIIKKYEKNLLALDPAPEYIEDKFNNGLYR 122 The following BLAST results are available for this feature:
BLAST of EWM24702.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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