EWM24702.1, cds5979 (CDS) Nannochloropsis gaditana

Overview
NameEWM24702.1
Unique Namecds5979
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:312239..312510 -
Alignment locationCM002467.1:311988..312103 -
Alignment locationCM002467.1:311616..311866 -
Alignment locationCM002467.1:311513..311527 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24702.1
Productphotosystem ii 12 kda extrinsic protein
Orig transcript idgnl|cribi|Naga_100076g3.8810.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:312239..312510 -
CM002467.1supercontigCM002467.1:311988..312103 -
CM002467.1supercontigCM002467.1:311616..311866 -
CM002467.1supercontigCM002467.1:311513..311527 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0009536plastid
GO:0016020membrane
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0042549photosystem II stabilization
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR010527PSII_PsbU
Homology
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|585106230|gb|EWM24702.1| (photosystem ii 12 kda extrinsic protein [Nannochloropsis gaditana])

HSP 1 Score: 451.825 bits (1161), Expect = 8.029e-161
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 MGPLSWKTPIHLCHQMAFMAQLQATCIRVHAILRNLSSYGFKFTGTHFLPMHYPPSTTSRPHLSHTMKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            MGPLSWKTPIHLCHQMAFMAQLQATCIRVHAILRNLSSYGFKFTGTHFLPMHYPPSTTSRPHLSHTMKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR
Sbjct:    1 MGPLSWKTPIHLCHQMAFMAQLQATCIRVHAILRNLSSYGFKFTGTHFLPMHYPPSTTSRPHLSHTMKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|873229913|emb|CEM11926.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 153.295 bits (386), Expect = 9.875e-44
Identity = 79/165 (47.88%), Postives = 106/165 (64.24%), Query Frame = 0
Query:   67 MKSIIALLL--AAPALAFMPPTPAPQRTEV-------IMSASRDWKKDLAKAAFVVMPMVA-----PLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            MK++IAL L  A  A A++ P   P            +M+   +  +  A  +   +P+ A     P  A A  DY+GVGYLGG+EKID+NNANVRVY R PGMYPT+  K+  +GPY++V D+YSI GL+E+EK +LKKYES F+ L+P  EYT+D+ NNGLYR
Sbjct:    1 MKAVIALALSFALCAEAYVLPAQRPTSLRRQGATSLRMMAEDGEVSRRNALMSIASLPLAAALFATPFAAEAVRDYDGVGYLGGAEKIDLNNANVRVYQRLPGMYPTLGAKLAKNGPYQNVKDVYSIKGLSEREKELLKKYESDFVVLQPREEYTVDKFNNGLYR 165          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|397628898|gb|EJK69097.1| (hypothetical protein THAOC_09685 [Thalassiosira oceanica])

HSP 1 Score: 150.984 bits (380), Expect = 4.925e-43
Identity = 81/152 (53.29%), Postives = 99/152 (65.13%), Query Frame = 0
Query:   67 MKSIIALLLAAPALAFMP-PTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            MK+ I   L + A AF P   PA Q     ++A    ++    AA        P  A A++DYE V YLGG   +DVNNANVR Y R PGMYP+ AGKIV+HGPYKSVAD+Y+I GLT  EK ++KKYESKF+  +PA EY IDR+NNGLYR
Sbjct:    1 MKTAIIATLISTAAAFAPNAQPAAQ---TALNAEAADRRSFLGAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGMYPSAAGKIVTHGPYKSVADVYNIPGLTSAEKEVIKKYESKFVAKDPAAEYVIDRVNNGLYR 149          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|676395339|ref|XP_009040947.1| (hypothetical protein AURANDRAFT_32656 [Aureococcus anophagefferens] >gi|323448492|gb|EGB04390.1| hypothetical protein AURANDRAFT_32656 [Aureococcus anophagefferens])

HSP 1 Score: 147.132 bits (370), Expect = 1.023e-41
Identity = 65/94 (69.15%), Postives = 79/94 (84.04%), Query Frame = 0
Query:  124 AKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            A  DY G+ YLGGS KID+NNAN+RVY++ PGMYP  AGKI S+GPYKSV+D+Y+I GL + EK+ +KKYES+FITLEPAP Y IDR+NNGLYR
Sbjct:   44 ADTDYAGLPYLGGSSKIDINNANIRVYAKLPGMYPGAAGKIASNGPYKSVSDVYNIKGLKDAEKAAIKKYESRFITLEPAPMYVIDRMNNGLYR 137          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|1210519407|dbj|GAX21791.1| (photosystem II PsbU protein [Fistulifera solaris])

HSP 1 Score: 147.132 bits (370), Expect = 1.588e-41
Identity = 82/151 (54.30%), Postives = 104/151 (68.87%), Query Frame = 0
Query:   67 MKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            MK  I   L   A AF+  TP+ +R  V + A R   ++   A      + AP+ A A  DY+ VGYLGGSE +DVNNANVRVY + PG+YPTVAGKI ++GPYKSV DLY+I GL+ +EK ++KKYES+F  LEP+ +Y IDRINNGLYR
Sbjct:    1 MKLAIFAALFTAASAFV--TPSAERPSVALQAER---REFLSALAGAAALAAPMAANAVRDYDNVGYLGGSEIVDVNNANVRVYLKMPGLYPTVAGKIATNGPYKSVGDLYNIPGLSGKEKELIKKYESRFTALEPSADYVIDRINNGLYR 146          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|1210530546|dbj|GAX10873.1| (photosystem II PsbU protein [Fistulifera solaris])

HSP 1 Score: 146.747 bits (369), Expect = 2.322e-41
Identity = 76/132 (57.58%), Postives = 97/132 (73.48%), Query Frame = 0
Query:   86 TPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            TP+ +R  V + A R   ++   A      + AP+ A A  DY+ VGYLGGSE +DVNNANVRVY + PG+YPTVAGKI ++GPYKSVADLY+I GL+ +EK ++KKYES+F  LEP+ +Y IDRINNGLYR
Sbjct:   18 TPSAERASVALQAER---REFLSALAGAAALAAPMAANAVRDYDNVGYLGGSEIVDVNNANVRVYLKMPGLYPTVAGKIATNGPYKSVADLYNIPGLSGKEKELIKKYESRFTALEPSADYVIDRINNGLYR 146          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|75243477|sp|Q84XB6.1|PSBU_PHATR (RecName: Full=Photosystem II 12 kDa extrinsic protein, chloroplastic; AltName: Full=PS II complex 12 kDa extrinsic protein; AltName: Full=PSII-U; Flags: Precursor >gi|28565369|gb|AAO43195.1| photosystem II 12 kDa extrinsic protein precursor [Phaeodactylum tricornutum])

HSP 1 Score: 145.591 bits (366), Expect = 5.952e-41
Identity = 76/151 (50.33%), Postives = 99/151 (65.56%), Query Frame = 0
Query:   67 MKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            MK  +  +L +   AF+ P    +     ++A R   ++   AA V   +  PL A A  DYE VGYLGGSE +DVNNANVRVY + PG+YPT+AGKI S+GPY +V DLY+I GL+ +EK +LKKYES+F   +P  +Y IDR NNGLYR
Sbjct:    1 MKLAVFAVLISTVAAFVAPNGVQRAATTELNAER---REFLSAAAVAAGLAFPLTANAIRDYENVGYLGGSEIVDVNNANVRVYLKMPGLYPTLAGKIASNGPYNAVGDLYNIPGLSGKEKELLKKYESRFTAQKPQADYVIDRFNNGLYR 148          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|219115141|ref|XP_002178366.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410101|gb|EEC50031.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 144.436 bits (363), Expect = 1.764e-40
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 0
Query:   67 MKSIIALLLAAPALAFMPPTPAPQRTEVIMSASRDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            MK  +  +L +   +F+ P    +     ++A R   ++   AA V   +  PL A A  DYE VGYLGGSE +DVNNANVRVY + PG+YPT+AGKI S+GPY +V DLY+I GL+ +EK +LKKYES+F   +P  +Y IDR NNGLYR
Sbjct:    1 MKLAVFAVLISTVASFVAPNGVQRAATTELNAER---REFLSAAAVAAGLAFPLTANAIRDYENVGYLGGSEIVDVNNANVRVYLKMPGLYPTLAGKIASNGPYNAVGDLYNIPGLSGKEKELLKKYESRFTAQKPQADYVIDRFNNGLYR 148          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|223996703|ref|XP_002288025.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977141|gb|EED95468.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 143.665 bits (361), Expect = 3.855e-40
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 0
Query:  126 IDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            +DYE V  LGGS+ +D+NNANVR Y R PGMYP  AGKIV+HGPYKSVAD+Y+I GLT  EK ++KKYES+F     APEY IDRINNGLYR
Sbjct:   57 VDYENVALLGGSQTVDLNNANVRAYLRMPGMYPAAAGKIVTHGPYKSVADVYNIPGLTNAEKEVIKKYESRFTAKAVAPEYAIDRINNGLYR 148          
BLAST of EWM24702.1 vs. NCBI_GenBank
Match: gi|551673122|ref|XP_005839317.1| (hypothetical protein GUITHDRAFT_65512 [Guillardia theta CCMP2712] >gi|428183479|gb|EKX52337.1| hypothetical protein GUITHDRAFT_65512 [Guillardia theta CCMP2712])

HSP 1 Score: 140.584 bits (353), Expect = 2.338e-39
Identity = 68/124 (54.84%), Postives = 90/124 (72.58%), Query Frame = 0
Query:   96 MSASRDWKKDLAK--AAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 217
            M A    ++DL K  AAF V    AP++A A+IDY  V +LGGS+KID+NNANVRVY++ PGMYPT+AG I  +GPY++V DLY +  L+ ++K I+KKYE   + L+PAPEY  D+ NNGLYR
Sbjct:    1 MQADGLSRRDLIKNVAAFGVA--AAPVLANAEIDYANVPFLGGSDKIDINNANVRVYTKLPGMYPTIAGIICKYGPYQTVEDLYKVPSLSAEQKQIIKKYEKNLLALDPAPEYIEDKFNNGLYR 122          
The following BLAST results are available for this feature:
BLAST of EWM24702.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106230|gb|EWM24702.1|8.029e-161100.00photosystem ii 12 kda extrinsic protein [Nannochlo... [more]
gi|873229913|emb|CEM11926.1|9.875e-4447.88unnamed protein product [Vitrella brassicaformis C... [more]
gi|397628898|gb|EJK69097.1|4.925e-4353.29hypothetical protein THAOC_09685 [Thalassiosira oc... [more]
gi|676395339|ref|XP_009040947.1|1.023e-4169.15hypothetical protein AURANDRAFT_32656 [Aureococcus... [more]
gi|1210519407|dbj|GAX21791.1|1.588e-4154.30photosystem II PsbU protein [Fistulifera solaris][more]
gi|1210530546|dbj|GAX10873.1|2.322e-4157.58photosystem II PsbU protein [Fistulifera solaris][more]
gi|75243477|sp|Q84XB6.1|PSBU_PHATR5.952e-4150.33RecName: Full=Photosystem II 12 kDa extrinsic prot... [more]
gi|219115141|ref|XP_002178366.1|1.764e-4049.67predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223996703|ref|XP_002288025.1|3.855e-4068.48predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551673122|ref|XP_005839317.1|2.338e-3954.84hypothetical protein GUITHDRAFT_65512 [Guillardia ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5994rna5994Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications