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Properties
| Property Name | Value |
|---|
| Product | photosystem ii 12 kda extrinsic protein |
| Orig transcript id | gnl|cribi|Naga_100076g3.8810.mrna |
| Orig protein id | gnl|cribi|Naga_100076g3.8810 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:311078..312853 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5994 ID=rna5994|Name=rna5994|organism=Nannochloropsis gaditana|type=mRNA|length=2085bp
ATGGAGGAGGAGGAGGAAAGGGAAGAGCACATGTTCTGGACAAACATGCA
AGATGTGGAGCACGCCCAGCAGCAGGAACAGGAGCAGCGATCCTTTCTGT
CGCGGCACCGTCCATTGCCGGCACCTAAGACAGGGAGAAATGGAAGCAGG
GAGGATAGACGCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCGGTCCC
CAACAGGGGCAACACGGGCAGTGTCCTGACTAATTTGCATGGCCTAGTCC
GCGCTGCAGCGAGTAGTGCCGGGGGGGTTGTTCACCCTTTTAAGGGCCGT
CACGAGGACTCCTTCCAGTACCACCACTTGGCGGGGGACGGGGCCGCGGG
CGGGCGTGAGGGCAGGAGGGAGGGAGCGGCTCGTGGCATGCACGGGGGGG
GGGGGAAGGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGCGGGCAGGGTGGGCGCCAGTGGCGAATCTAGACGTTTTCTTCCA
AGCTATGTACAAATATTACGAGAACAAGGGTTTTCACGCGATCTTGGCGG
CGGGGGCCACCAACCTGGTCTCCCTGGCCTTCACGGTCGCCCTCTCCACC
TGGCTCTTCGCCTTCGTGGACTGGGGCCGCCTCACCTCCTGCCACGATGA
GGAGTCCTGCCTCCCTTTCTCCCACTACCTGCACGGGAGGGGCATGTGGC
GGTACGGCCTGGCCTGGGTCTACTGCCTCCTCTTCCTCCTCTACTGGTGC
GTCTCCTGCTACTGGTTCCTCCTCACCCTCAAGGACGCGGTGGAGATGCG
GGCCGTTTACACAGAGCGGCTGGGCATCCGCGACGAGGAGCTGGGCTCCC
TCGAGTGGCACCAGGTGGTGGAGAGGTTCCTGGCCAGGCATCGCTCGGGC
GAGTACCGGGTATCCATCCACGGGGAAATCACTGCCCAGGATATCGCCGC
GCGGATCATGCGCCGTGAGAATTTCTTGGTGGCGCTCATTCACCGGCGGG
TCTTGGACCTGGTGCTGCCCCGGCCCGCCGTGCTCGTGTCGGAGGTGGCG
GCAGCAGGGGGGATGGCGGGCCCCGGGGGAAGGGAGGGGCGTGTGCCGCC
GCGGCCACAGGAAGAGTTCTTGACGCGGAATTTGCAGTGGTCTCTGCACG
TGTGCGTGCTCAACGACATGTTCACGGAGAAGTTCACCCTCCGCAGAGAC
TTCCTCTCGGACGAGGCTGGGCTGCGGCGTCGCTTCGTGTGGGTGGGGGT
GGCCCAGCTCGCGCTCATGCCTTTCCTCCTCGTCTTCATGGTCATCCAGT
TCTTTCTCCAGAACGCCCAGGCCTGGCAGCAGAAGAAGAACTACCTCGGG
CCTCGGCAATGGAGCCCGTTGGCGCAGTGGCGCTTCCGCGAGTACAACGA
GCTCCCCCACCTGTTTGAGCGCCGCCTCCGAGCCTCCCACCCCTACGCGG
CCCTCTACACTCGCCAGACCCCGCGCCCCGTCCTAGGCGTGCTCGCTCGC
TGCCTCGCCTACATGACCGGCTCCGTGGTCGCCGTCCTCCTCCTCTTCAC
CCTCGTGGACGAGAGCATCGTCCTCTACGTGAAAGTGTGGGACCGGAACC
TCCTCTGGTACCTGGGCGTCTTCTCCGCGCTCTTCGCCATGTCCCGGACT
ATGATACCCGGACCTGAGGACGAGGCCCGAGGGGCCCAGGAGGAGACCAT
GGCGCGCCTGGCCGCCCACACCCACTACTTCCCCGCGCGCTGGCGGGGTC
GGTGCAGCTCTCAGGAGGTTCGCGCCGAGTTCTCTTCGCTCTTCCAGTAC
AAGACCGCCCTCTTCCAGCAGGAGGTTCTATCCGTGCTCGTTACCCCCTT
AATCCTCTGCTTCTCCCTCCCTGCCTGCGCGGGCCGCATCCTCGCCTTCG
TCAAGAGCCACCACCGGACAGTGGAGGGGGTGGGCTCTGTCTGCGATTAC
TCCCTCTTTGACCTGGACCGGTGTGGGAGCCGGCGATACGGGGGCAGGGG
GTCCGCTGAGGGGGGGGGCGGAGGAGGAAGTGGACGGAGCGGGGGAGGGA
GAGGGGGAAGGGAAGTTGGAAAAGTCCGTCCTTAA back to topprotein sequence of rna5994 >rna5994-protein ID=rna5994-protein|Name=rna5994|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MGPLSWKTPIHLCHQMAFMAQLQATCIRVHAILRNLSSYGFKFTGTHFLP
MHYPPSTTSRPHLSHTMKSIIALLLAAPALAFMPPTPAPQRTEVIMSASR
DWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVY
SRFPGMYPTVAGKIVSHGPYKSVADLYSISGLTEQEKSILKKYESKFITL
EPAPEYTIDRINNGLYR back to topmRNA from alignment at CM002467.1:311078..312853- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5994 ID=rna5994|Name=rna5994|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp|location=Sequence derived from alignment at CM002467.1:311078..312853- (Nannochloropsis gaditana)
CACAGAGCACCGTGTGCTTGTCCTCCCTTACTTCTTGTCCACTGTCCCGG
GGGCTTGCCCCCCGGTTCAAGGCGTTCGGAATGGTTTCGTGCGGAGCGCG
GGCGGGCGCCAGGACGCGTTGGTCTGATGGCCAGGGCATATTCTTTCGCG
TGTCTTCGGGTGGCGAGGCCTCGACGCTGTCGAGGAGGGCTTTCGGTGCG
GTGCCTTGTGCCTTTGCCTGCGATCAAGGGATCCACTTGGCAGTGCAAAG
CTTAAACCGAGTGACGTGATCGTACAGCCTGGAAGAGCCTGGTTTTGTGC
ACCCTGGGGGCGCAGGGAAAGGGAAGGCTGGGAGTGACAGAGCATGGGGC
CGCTCTCGTGGAAGACGCCTATACACTTATGCCATCAGATGGCATTCATG
GCCCAACTGCAGGCCACGTGCATTCGTGTACATGCCATTCTACGAAATTT
GTCGAGCTATGGTTTCAAATTCACTGGTACTCATTTTCTGCCGATGCACT
ATCCGCCTTCAACCACAAGCAGACCTCACCTCTCTCACACCATGAAGTCC
ATCATCGCCCTCCTTTTGGCCGCTCCGGCCCTGGCTTTCATGCCTCCTAC
TCCTGCTCCCCAGCGGTACGTTGACCGATCAGGGCTTTTGAAAGCAGATG
CGGGTTTCTAGATAGCGTAGACACGTCAAGTTTGCGCATGCATGAGGCTG
TGGGCAGGCTGAGAATTTTCCTTGCTATATGCTCCCTTTCCCTCGTACAG
CACCGAAGTCATCATGAGCGCATCCCGGGACTGGAAGAAAGACTTGGCCA
AGGCCGCATTCGTGGTCATGCCCATGGTTGCCCCTCTCGTGGCAGGCGCC
AAGATCGACTACGAGGGTAAGAGACGGGACACGGGCGAAGAGGGAAGAGC
TTTCAGAGGAGGAATTCAGTGTGAAGCACCCTCTGCTGCTCGCGCAGATG
TCGTGCTCACTCTCCTACCGTCTCTCCCTTCCCTTAGGCGTGGGCTACCT
GGGCGGGTCCGAGAAGATCGACGTGAACAACGCCAATGTCCGTGTCTACT
CCCGCTTCCCCGGCATGTACCCCACCGTGGCGGGGAAGATCGTCTCCCAC
GGGCCCTACAAGTCCGTGGCGGACCTGTACTCGATCAGCGGGTTGACTGA
GCAGGAGAAGAGCATCTTGAAGAAGTACGAGAGCAAGTTCATCACCCTTG
AGCCCGCGCCCGAGTACACGATCGACCGCATCAACAACGTGAGTGAAAGG
GAGGGTGCGGGAAGGGAGCTTTTGGCAGCTTGATGACTGTTTGCACTCAC
ATTTGTGCATCTGCACGCACGCACAGGGCCTATACCGTTAGAGGCTCTAC
ATGTGGCTTGGGCGGGGGGGGTCCCCGCTGTCCGGCCTCTCATCCCTGCG
GGTGCTCGGTGCTTCGAGTCCCCCATCTCTCGTCCACGTGTCGCACGGTC
CTGGTCCGTGGTTGCTGGTGATCCATACGGGAAAAACATGGCGGAAGGGG
AGGGAGGGGGAAAGGGCCTCTGAACGAGGAGGGTGGGGGGCGGGCAGGCG
GGGGCTTGGAGGAGGAACGTGACTGAACGCGAAGGAGCGAGACGAGGCGC
CCGGTGCTAGGACTTCTTTCTGTGTGCTTGGCCTGGCGGGAGAAGAAAGA
GCGCACAGAAGGATGAACGCGTGGGGTATTAAGCAAGAAAAGAGAAATCG
AGTCGACAGGAAACACACCGCCGTGTCTGTTCATGAGCCTGTGCGAACAT
TTGTCTTCGCCCAGGATGTTTTTTGC back to topCoding sequence (CDS) from alignment at CM002467.1:311078..312853- >rna5994 ID=rna5994|Name=rna5994|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at CM002467.1:311078..312853- (Nannochloropsis gaditana)
GGCCTATACCGTTAGGCGTGGGCTACCTGGGCGGGTCCGAGAAGATCGAC
GTGAACAACGCCAATGTCCGTGTCTACTCCCGCTTCCCCGGCATGTACCC
CACCGTGGCGGGGAAGATCGTCTCCCACGGGCCCTACAAGTCCGTGGCGG
ACCTGTACTCGATCAGCGGGTTGACTGAGCAGGAGAAGAGCATCTTGAAG
AAGTACGAGAGCAAGTTCATCACCCTTGAGCCCGCGCCCGAGTACACGAT
CGACCGCATCAACAACCACCGAAGTCATCATGAGCGCATCCCGGGACTGG
AAGAAAGACTTGGCCAAGGCCGCATTCGTGGTCATGCCCATGGTTGCCCC
TCTCGTGGCAGGCGCCAAGATCGACTACGAGGATGGGGCCGCTCTCGTGG
AAGACGCCTATACACTTATGCCATCAGATGGCATTCATGGCCCAACTGCA
GGCCACGTGCATTCGTGTACATGCCATTCTACGAAATTTGTCGAGCTATG
GTTTCAAATTCACTGGTACTCATTTTCTGCCGATGCACTATCCGCCTTCA
ACCACAAGCAGACCTCACCTCTCTCACACCATGAAGTCCATCATCGCCCT
CCTTTTGGCCGCTCCGGCCCTGGCTTTCATGCCTCCTACTCCTGCTCCCC
AGCGGGCCTATACCGTTAGGCGTGGGCTACCTGGGCGGGTCCGAGAAGAT
CGACGTGAACAACGCCAATGTCCGTGTCTACTCCCGCTTCCCCGGCATGT
ACCCCACCGTGGCGGGGAAGATCGTCTCCCACGGGCCCTACAAGTCCGTG
GCGGACCTGTACTCGATCAGCGGGTTGACTGAGCAGGAGAAGAGCATCTT
GAAGAAGTACGAGAGCAAGTTCATCACCCTTGAGCCCGCGCCCGAGTACA
CGATCGACCGCATCAACAACCACCGAAGTCATCATGAGCGCATCCCGGGA
CTGGAAGAAAGACTTGGCCAAGGCCGCATTCGTGGTCATGCCCATGGTTG
CCCCTCTCGTGGCAGGCGCCAAGATCGACTACGAGGATGGGGCCGCTCTC
GTGGAAGACGCCTATACACTTATGCCATCAGATGGCATTCATGGCCCAAC
TGCAGGCCACGTGCATTCGTGTACATGCCATTCTACGAAATTTGTCGAGC
TATGGTTTCAAATTCACTGGTACTCATTTTCTGCCGATGCACTATCCGCC
TTCAACCACAAGCAGACCTCACCTCTCTCACACCATGAAGTCCATCATCG
CCCTCCTTTTGGCCGCTCCGGCCCTGGCTTTCATGCCTCCTACTCCTGCT
CCCCAGCGGGCCTATACCGTTAGGCGTGGGCTACCTGGGCGGGTCCGAGA
AGATCGACGTGAACAACGCCAATGTCCGTGTCTACTCCCGCTTCCCCGGC
ATGTACCCCACCGTGGCGGGGAAGATCGTCTCCCACGGGCCCTACAAGTC
CGTGGCGGACCTGTACTCGATCAGCGGGTTGACTGAGCAGGAGAAGAGCA
TCTTGAAGAAGTACGAGAGCAAGTTCATCACCCTTGAGCCCGCGCCCGAG
TACACGATCGACCGCATCAACAACCACCGAAGTCATCATGAGCGCATCCC
GGGACTGGAAGAAAGACTTGGCCAAGGCCGCATTCGTGGTCATGCCCATG
GTTGCCCCTCTCGTGGCAGGCGCCAAGATCGACTACGAGGATGGGGCCGC
TCTCGTGGAAGACGCCTATACACTTATGCCATCAGATGGCATTCATGGCC
CAACTGCAGGCCACGTGCATTCGTGTACATGCCATTCTACGAAATTTGTC
GAGCTATGGTTTCAAATTCACTGGTACTCATTTTCTGCCGATGCACTATC
CGCCTTCAACCACAAGCAGACCTCACCTCTCTCACACCATGAAGTCCATC
ATCGCCCTCCTTTTGGCCGCTCCGGCCCTGGCTTTCATGCCTCCTACTCC
TGCTCCCCAGCGGGCCTATACCGTTAGGCGTGGGCTACCTGGGCGGGTCC
GAGAAGATCGACGTGAACAACGCCAATGTCCGTGTCTACTCCCGCTTCCC
CGGCATGTACCCCACCGTGGCGGGGAAGATCGTCTCCCACGGGCCCTACA
AGTCCGTGGCGGACCTGTACTCGATCAGCGGGTTGACTGAGCAGGAGAAG
AGCATCTTGAAGAAGTACGAGAGCAAGTTCATCACCCTTGAGCCCGCGCC
CGAGTACACGATCGACCGCATCAACAACCACCGAAGTCATCATGAGCGCA
TCCCGGGACTGGAAGAAAGACTTGGCCAAGGCCGCATTCGTGGTCATGCC
CATGGTTGCCCCTCTCGTGGCAGGCGCCAAGATCGACTACGAGGATGGGG
CCGCTCTCGTGGAAGACGCCTATACACTTATGCCATCAGATGGCATTCAT
GGCCCAACTGCAGGCCACGTGCATTCGTGTACATGCCATTCTACGAAATT
TGTCGAGCTATGGTTTCAAATTCACTGGTACTCATTTTCTGCCGATGCAC
TATCCGCCTTCAACCACAAGCAGACCTCACCTCTCTCACACCATGAAGTC
CATCATCGCCCTCCTTTTGGCCGCTCCGGCCCTGGCTTTCATGCCTCCTA
CTCCTGCTCCCCAGCG back to top
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