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Properties
Property Name | Value |
Product | ubiquitin conjugation factor e4 b isoform 2 |
Orig transcript id | gnl|cribi|Naga_100076g24.8799.mrna |
Orig protein id | gnl|cribi|Naga_100076g24.8799 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002467.1 | supercontig | CM002467.1:258735..260480 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5975 ID=rna5975|Name=rna5975|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp GCCTTGCAGTTTCAAGTGGTGGTGCATGACGTCTCCCTTCGGTGGAGGTT GTTCGCGGGGAGGGACTGGGGAGAGAGGGAGGGGAGGAAGGCGTTGGGAG GGAGGGAGGGAGGGAGGGAGGGGGAGGTTCGAGCGCCACGCGGGAAGCAC CTGGAGGAGCTGTTGGACGGGGGGGAAGGAGGGAGGACGCCGGGGAGGGG CCAGGGCCGGCGGAGGCGGCGGCGGAGGAAGAGCGAGGGCCGGCAAGTCG GGTGCATGATGGAGGTGTGCCTGAGCCACGCCCGCCTGCAGCATGCGAGT TTTATGCCCGGGCAGACACGGGCAGCGCGGAGCCGAGTGTGGGTGTCGGA TCTCTGTGTCTTGGACCGAATCATCTCGGTGCAGCCGCGGCGGGTCTTGG GCTACTGGCGCTCCGACAGGGAGCACCCCCGGGACGGAACGGCGCCCATG CTCCAGGTGGACGTGTCGGCATGGACCCCTCGGTACGACGCCTCGGTGGT GCAGGGGAAGGGGGGGGGGGCGGACGCGGGGGGGGGCGGGGAAGGGGAAG GGGCAGGCGGGAGGGAGGGATCGGGGGAGGCGCCGGTGGAGGAGCTGACT CTGAGGGTCCGGCTTCTGCCCCTCCGGGTCCTTGTGGACCGACACACGAT CGACTTCGTGTCTAATTTTTTCGCCCTGGTCGACGCCTCCGCCCGTACCT CCCCCCCGCCCTCCGCCGGCACCTCCCCTGCCCTCCCCTTGGAGCACCTG GCTTTCTTCCAGTCCGTCCTCGTCCGTCCAGTGAAAGTGAAGCTCGACAC GCAGACCCGGCCCCTCAACCTCCGGGAGGTGCAACGGGGGAATTACGCCG AGCTTTTGAATTTGTGTCCATTGAAAAACGTCAAACTTCAACTGGCGGCC GTTACGCTTCGGGGGATTTCGGGGTGGGCGGCGATTGGGGAGGGCGTGCG GGAATCCTGGGTGCGGGACGTGACCGAGAAACAAATGTACCGCCTCCTGA TGGGGCCCTCCCCGATCCGATCCGTCTTCAACATGGGTTCGGGCGTCGCA GATTTGATATTGCTTCCCCTGGAGCACTACCGGAGGGATGGGCGGGTGTT TCGAGGCTTGAGGAAAGGAGTGATCCGCTGCCTGCGCAACGTCAGCATTG AGGCCTTGAACGCCTCGGTGGGGATAACCAGGGCGGTGGCTTCCACGCTG AACGACCTGGTCGCCCTGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGG GCGGGAGGGAGGACAGGTATGGGTCCAAGCGGATTTGCAACCGAAAGGCA TGCGGGAAGGTCTGGAGCACGCCTACGACACCTTAAGTAAGGGCTTCAGC ACCGTAGCTCACACCATCATCGCCGTGCCGATCCAAGAGATGGAGCGGTC GGGGCCCCAAGGGAGCGTGCGGGCCGTCATTCGCGCCCTGCCGATCGCGG TGGTGAAGCCCGTGGTGGGGGTTTCGGAGGCACTCTCCATCACATTGCTG GGGGTGCGGAACAAGCTGGATCCGGGGAGTCGGAGGGAGGAAGAGGAGCT CTGGCGGGTGTGAGGGAGGGAGGGAGGGAGGGAGGGAGG back to topprotein sequence of rna5975 >rna5975-protein ID=rna5975-protein|Name=rna5975|organism=Nannochloropsis gaditana|type=polypeptide|length=508bp MTRILFPSPAFPFPSPQEISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAA TPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCI QALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYT SFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSP EHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKD SPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVR KPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREV ALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACT ALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMER AAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEK EEKEAHGV back to topmRNA from alignment at CM002467.1:258735..260480+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5975 ID=rna5975|Name=rna5975|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp|location=Sequence derived from alignment at CM002467.1:258735..260480+ (Nannochloropsis gaditana) ATGACACGgattctctttccttcccccgctttccctttcccttcccccca
ggaAATTTCCCTTTTGGAGCCCGACCTCCTCGACAAGGCCATGGTCTTCG
TGGGCGGGGCCGCCGCCTGGTTCTCCTCCCAGGCTTTCGACGCCGCAGCC
ACGCCCGATCTGGCCGCAGCCTTGGCCTTTTGCAGCCGATGCCCGGAGCA
TCTCTTGGAGgacctcctcgtcctggtcAAATTCGTGGGACGGGCGCACC
CGCAGAGCCTCCTGACGGCGCCGCTGGCGCCTTTTTTTGATTTGTGCATC
CAGGCGTTGACCCGGCCCCAGCTCGTGCACTCCCCCCATTTGCGCGCCAA
AATCGGCGATTTGCTCTActtggtcttcctcccccccgaggaGCGGCTCG
ACCACTCGagcacctccgccgccgccacccgaGGCCACAGCGTCtacacc
tccttcctcctcaacaaCCCCTTGGCCCAGGCATCCctcgcgcccgccct
cctcctcctttatgGGGACGTGGAGCACACGGGCTTCTATGACAAGCTCG
AGCATCGCTTCCACATCGCTGCCGTCTTGAAGTTCCTCTGGAGATCTCCC
GAACACCGGCGGACCTTCCGAAGGATCTCCTCCGACACCTCTCAAttcac
ctccttcgccaaCGGCTTGATGAACGAAACCAACGCTCTGGTTGCCTCCG
TGATGGAGAAACTCCCCGAGATCCGATCCGTTCAGCTCCAGATGAAAGAC
AGCCCGGCGTGGGCCGCCATGCCGGAAGAGAGTCGGAACGAAATCATGGA
GCGGCACAACGACAACGAGCGCAgtgtctcgtcctccttgctcctctgCA
ACGAGACCATCCACATGCTCATGTACCTGACCAGTGACGAGGCAGTCCGC
aagcccttcctcgctcccgccctctccccccgcctggcCAACACCCTGCT
TTCGATCGTAGACAAGCTGGTGGGGACGAAAGGGTTGGAGATCAAGGTGG
AAAACCCCGACGCTTTGAATTTCAAACCCAAGGAGATGCTCCGGGAGGTG
GCCCTGACCATCCTCCATTTCGCCGGGGAGCCTGCCTTCCACACCGCCCT
CTCCGAGTCGGGCTACTACCACGAAGGGATGCTTGGCAAAGTCCAGCAGA
CCATGAAACGGGTGGGGGGCATGAGCGAGGCGCAGCTTGAGGCATGCACG
GCCCTGGAAACCGCcgtggcctcggcggccgaaaaggcagaggcggagga
tttgggcgtggaggtgccGGACGAATTTCTGGACCCCTTGCTCTGCACGT
TGATGAAAGACCCCGTGCGGCTGCCCACATCCGGCTACGCGATGGAACGG
GCGGCGATCGAACAACATTTGTTGAACCAACCTACGGACCCGTTCAACCG
TCAGCCGTTGAGTCTAACGGATCTGGAGCCGTTACCAGAATTGAAGGCGA
AGATTGAGACATGGGTAGAGGAGCAGCGATTgtcaaaaaggaaagagaag
gaggagaaagaggcgcaTGGTGTTTGAGATGATAACAGGATTGAGCCTAT
ACTTGGAGTCTGGGTGACGCGTTTCGCAGACGAGGAAGTAGGAGGGGCTG
CTCTGGAGTAGACGGATGAGAGGACTTGCGATGGGCGATTTCACGCGCCA
TGGCGACACGGCCTTCCCTCTAGAGTGACGAAGTACattggaaaaaaaga
agtaAGCAAGATAGGGTAGCACGCCGGCCCAAGAGGTGGACAACGG back to topCoding sequence (CDS) from alignment at CM002467.1:258735..260480+ >rna5975 ID=rna5975|Name=rna5975|organism=Nannochloropsis gaditana|type=CDS|length=1527bp|location=Sequence derived from alignment at CM002467.1:258735..260480+ (Nannochloropsis gaditana) ATGACACGgattctctttccttcccccgctttccctttcccttcccccca ggaAATTTCCCTTTTGGAGCCCGACCTCCTCGACAAGGCCATGGTCTTCG TGGGCGGGGCCGCCGCCTGGTTCTCCTCCCAGGCTTTCGACGCCGCAGCC ACGCCCGATCTGGCCGCAGCCTTGGCCTTTTGCAGCCGATGCCCGGAGCA TCTCTTGGAGgacctcctcgtcctggtcAAATTCGTGGGACGGGCGCACC CGCAGAGCCTCCTGACGGCGCCGCTGGCGCCTTTTTTTGATTTGTGCATC CAGGCGTTGACCCGGCCCCAGCTCGTGCACTCCCCCCATTTGCGCGCCAA AATCGGCGATTTGCTCTActtggtcttcctcccccccgaggaGCGGCTCG ACCACTCGagcacctccgccgccgccacccgaGGCCACAGCGTCtacacc tccttcctcctcaacaaCCCCTTGGCCCAGGCATCCctcgcgcccgccct cctcctcctttatgGGGACGTGGAGCACACGGGCTTCTATGACAAGCTCG AGCATCGCTTCCACATCGCTGCCGTCTTGAAGTTCCTCTGGAGATCTCCC GAACACCGGCGGACCTTCCGAAGGATCTCCTCCGACACCTCTCAAttcac ctccttcgccaaCGGCTTGATGAACGAAACCAACGCTCTGGTTGCCTCCG TGATGGAGAAACTCCCCGAGATCCGATCCGTTCAGCTCCAGATGAAAGAC AGCCCGGCGTGGGCCGCCATGCCGGAAGAGAGTCGGAACGAAATCATGGA GCGGCACAACGACAACGAGCGCAgtgtctcgtcctccttgctcctctgCA ACGAGACCATCCACATGCTCATGTACCTGACCAGTGACGAGGCAGTCCGC aagcccttcctcgctcccgccctctccccccgcctggcCAACACCCTGCT TTCGATCGTAGACAAGCTGGTGGGGACGAAAGGGTTGGAGATCAAGGTGG AAAACCCCGACGCTTTGAATTTCAAACCCAAGGAGATGCTCCGGGAGGTG GCCCTGACCATCCTCCATTTCGCCGGGGAGCCTGCCTTCCACACCGCCCT CTCCGAGTCGGGCTACTACCACGAAGGGATGCTTGGCAAAGTCCAGCAGA CCATGAAACGGGTGGGGGGCATGAGCGAGGCGCAGCTTGAGGCATGCACG GCCCTGGAAACCGCcgtggcctcggcggccgaaaaggcagaggcggagga tttgggcgtggaggtgccGGACGAATTTCTGGACCCCTTGCTCTGCACGT TGATGAAAGACCCCGTGCGGCTGCCCACATCCGGCTACGCGATGGAACGG GCGGCGATCGAACAACATTTGTTGAACCAACCTACGGACCCGTTCAACCG TCAGCCGTTGAGTCTAACGGATCTGGAGCCGTTACCAGAATTGAAGGCGA AGATTGAGACATGGGTAGAGGAGCAGCGATTgtcaaaaaggaaagagaag gaggagaaagaggcgcaTGGTGTTTGA back to top
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