EWM24691.1, cds5960 (CDS) Nannochloropsis gaditana

Overview
NameEWM24691.1
Unique Namecds5960
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:258735..260261 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24691.1
Productubiquitin conjugation factor e4 b isoform 2
Orig transcript idgnl|cribi|Naga_100076g24.8799.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:258735..260261 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0000151ubiquitin ligase complex
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0034450ubiquitin-ubiquitin ligase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019474Ub_conjug_fac_E4_core
IPR003613Ubox_domain
Homology
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|585106219|gb|EWM24691.1| (ubiquitin conjugation factor e4 b isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 1036.56 bits (2679), Expect = 0.000e+0
Identity = 508/508 (100.00%), Postives = 508/508 (100.00%), Query Frame = 0
Query:    1 MTRILFPSPAFPFPSPQEISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAATPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV 508
            MTRILFPSPAFPFPSPQEISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAATPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV
Sbjct:    1 MTRILFPSPAFPFPSPQEISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAATPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV 508          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|553182543|ref|XP_005853746.1| (ubiquitin conjugation factor E4 B [Nannochloropsis gaditana CCMP526] >gi|422295316|gb|EKU22615.1| ubiquitin conjugation factor E4 B [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1003.82 bits (2594), Expect = 0.000e+0
Identity = 491/492 (99.80%), Postives = 491/492 (99.80%), Query Frame = 0
Query:   17 QEISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAATPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV 508
            QEISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAATPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSE QLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV
Sbjct:  522 QEISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAATPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSETQLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV 1013          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|553182546|ref|XP_005853747.1| (ubiquitin conjugation factor E4 B [Nannochloropsis gaditana CCMP526] >gi|422295317|gb|EKU22616.1| ubiquitin conjugation factor E4 B [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 273/274 (99.64%), Postives = 273/274 (99.64%), Query Frame = 0
Query:  235 MEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV 508
            MEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSE QLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV
Sbjct:    1 MEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSETQLEACTALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEKEEKEAHGV 274          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|299473683|emb|CBN78076.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 473.011 bits (1216), Expect = 4.473e-154
Identity = 252/511 (49.32%), Postives = 331/511 (64.77%), Query Frame = 0
Query:    9 PAFPFPSPQ---------------EISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAATPDLAAALAFCSR--------------CPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEAEDLGV-EVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWV 489
            P  P P PQ               E+ + +PD+L  +++F+  A +W +      A     ++     SR               PEHL+ED+L L+ F+   HPQ+L T+ L P   + +  L  P LV SPHLRA +GD+LY  FLP  ER +     A    G   +T  L ++PLAQ  LAP+LLLLYGDVEHTGFY+KL HRF+IAAVLK+LWRS EHR TFRRIS DT +F  FANGLMNE+N+LVASVMEKLPE+R+VQLQM+D   W AM E  RNEI ERH++NERS+ S+L LCNET+HM+ YLTSD  ++KPFL   L  RLA  LL ++ +L+G+KGLEIKV+NP++ NF+PKEMLRE+  TI  F+ +P FH  L+ SGYY E +L K   TM+R+  +  + +    +L +AV  A    EA +  + EVPDEFLDP+LC +M+DPV LPTSG  ++R+ I QHLLN   DPFNRQPL+   +EP  EL+ +IE ++
Sbjct:  444 PGSPNPDPQMDMHFNMFVQRKLVAEVVISDPDVLADSLMFMVKAGSWLTEFVSKEAGVAIDSSEHEISSRGSLAGLSEDSLVWQLPEHLIEDILELILFLTNHHPQTLGTSQLYPLMTMVVFFLAHPSLVKSPHLRASLGDVLYKTFLPRSERGNEDPYGAPL--GGDAHTGLLYSHPLAQKHLAPSLLLLYGDVEHTGFYEKLTHRFYIAAVLKYLWRSKEHRSTFRRISQDTGKFVRFANGLMNESNSLVASVMEKLPEVRAVQLQMRDPAQWGAMTETQRNEIAERHDENERSLKSNLSLCNETLHMVAYLTSDPDIQKPFLREELLLRLAEMLLCVLKQLIGSKGLEIKVDNPESYNFRPKEMLREICTTISQFSTQPGFHKHLAMSGYYQEDLLPKATSTMRRLQLLPASSMADMDSLCSAVIEARASYEASEASLGEVPDEFLDPVLCHVMRDPVLLPTSGTILDRSTIVQHLLNDSMDPFNRQPLTEDMVEPQTELRERIEEFL 952          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|224003717|ref|XP_002291530.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973306|gb|EED91637.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 375.17 bits (962), Expect = 5.071e-122
Identity = 192/439 (43.74%), Postives = 274/439 (62.41%), Query Frame = 0
Query:   65 PEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTR--PQLVHSPHLRAKIGDLLYLVFLP--PEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAE-KAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRK 498
            PEH++ D   ++ +     P+ L     A  F L ++ L+R    LV + +LRAK+GDL++ +FLP   ++R D   + A           +L ++ LAQ +LAP+LLLLYG+VEHTGFY+K  HR  IA +LK+LW SPEH+  F+RI+ D   F  FANG++NE N+  ASVME+LP IR+VQLQM +   WAA+ EE R  I  RH +NERS+   L LCN  + ML +L +D+ +R  FL P + PRLAN LL ++ KLVG++GL++KV NP+  NF+PKEML+++ +    FA    F    ++SGYY   ++ K  +T +++G +    +E    L + V  A++     EDL  + PDEF+DPLL   M DPV LPTSG  ++R  I QHLLN   DPFNR+ L L D+ P  ELKAK++ W+  +R ++ K
Sbjct:   41 PEHIVTDFCAVLNYASEFTPKLLSGIDFADIFRLTVKLLSREYAHLVRNYNLRAKLGDLIHDIFLPGTSDDRSDVPDSVACDPLAGG--QPYLTSDKLAQETLAPSLLLLYGEVEHTGFYEKNGHRTKIAKMLKYLWGSPEHKAAFKRITEDKESFRKFANGIVNEMNSQFASVMERLPAIRTVQLQMANPQEWAALSEEDRETITSRHEENERSIKQVLPLCNSVMKMLGFLNTDKDIRDMFLLPDMCPRLANMLLHVLTKLVGSRGLDLKVNNPETYNFRPKEMLQDLCVVFSSFAAADEFQVECAKSGYYTPDLMNKSVKTCRKLGLLVGESMELFAELASKVEEASKIMTSDEDLYEDAPDEFMDPLLSEFMNDPVLLPTSGNIVDRKTITQHLLNDSMDPFNRKELKLEDVVPAVELKAKMDAWLAAKRKARAK 477          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|635364254|emb|CCI47272.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 385.185 bits (988), Expect = 2.050e-119
Identity = 195/432 (45.14%), Postives = 278/432 (64.35%), Query Frame = 0
Query:   65 PEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFL-APALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEAED--LGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQR 493
            P H +ED+  ++ F+ R  P+SL T  L P  D+ +  L+ P  +HSPHLRAK+ ++LY VFLP +E  +H S  AA+T    + +++    PLAQ  LAP LL LYGDVE TGFY+KLEHR+HIA +L++LW+ P H+  F RIS+D  +F  FA+GLMN  N+LV   +  LPEI+ +Q +M+D   W A+ E  R +      D ER+V+SSL L NETIHM+ YLT++  +++PFL  P L  RL + L  ++ KL G +GLE+KV NP+   F+PKEML+EV  T++HFA   +F  A++ +G+Y E +  K    ++R   + +  +         VA  A + + ++  LG E+PDEF+DPL+CT+MKDPV LPTSGY M+RA I QHLLN  +DPF R  L++  L P  ELKA+++ W+   R
Sbjct:  639 PAHFIEDICAVLIFISRVSPKSLSTFALDPLLDMILIFLSSPSYIHSPHLRAKMSEVLYHVFLPSDEAEEHQS--AASTLAIDLLSTY----PLAQEHLAPCLLALYGDVEQTGFYEKLEHRYHIACLLRYLWKVPGHKSAFVRISADEDKFVKFAHGLMNHINSLVTDALIALPEIKQLQEEMQDEARWMALDETVREQKQNLLADKERTVTSSLQLANETIHMMSYLTTE--IQEPFLRKPELEERLVSMLNCVLVKLAGPRGLELKVNNPEQYRFRPKEMLKEVVETLMHFAEFTSFQEAVALNGFYEEKIFSKCSNILRRTQLLPDQVITKFDVFLNNVAHRASQLKDDEAMLG-EIPDEFMDPLVCTIMKDPVILPTSGYTMDRATITQHLLNDQSDPFTRASLTIEQLVPNIELKAQVDAWIASAR 1061          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|325193562|emb|CCA27857.1| (ubiquitin conjugation factor E4 putative [Albugo laibachii Nc14])

HSP 1 Score: 382.874 bits (982), Expect = 1.859e-118
Identity = 194/427 (45.43%), Postives = 272/427 (63.70%), Query Frame = 0
Query:   65 PEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFL-APALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVAS-AAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWV 489
            P HL+ED+  ++ F+ R  P+SL    L P  D+ +  L+ P  +HSPHLRAK+ ++LY VFLP +E  +H S ++       +    L   PLAQ  LAP LL LYGDVE TGFY+KLEHR+HIA +L++LW+ P H+  F RIS D  +F  FA+GLMN  N LV   +  LPEI+ +Q +M+D   W A+ E  R +      D ER+V+SSL L NETIHM+ YLT++  +++PFL  P L  R+ + L S++ KL G +GLE+KV NP+   F+PKEML+EV  T+LHFA   +F  A++ +G+Y E +  K    ++R   + E  +         VA  A++  + E +  E+PDEF+DPL+CTLMKDPV LPTSGY M+RA I QHLLN  +DPF R PL++  L P  +LKA+++ W+
Sbjct:  640 PAHLVEDICAVLIFIARVSPKSLTNFALDPLLDMILIFLSSPSYIHSPHLRAKMSEVLYHVFLPLDEAEEHQSAASP------LAIDLLSTYPLAQEHLAPCLLALYGDVEQTGFYEKLEHRYHIACLLRYLWKVPGHKSAFVRISEDEDKFVKFAHGLMNHINTLVTDALIALPEIKQLQEEMQDIAGWMALEEAVREQKQNLLADKERTVTSSLQLANETIHMMSYLTTE--IQEPFLRKPELEERVVSMLNSVLVKLAGPRGLELKVNNPEQYRFRPKEMLKEVVETLLHFAEFTSFQGAVAVNGFYEEKIFSKCSNILRRTQLLPEQVIAKFDVFLRNVAQRASQLVKDEAMLGEIPDEFMDPLVCTLMKDPVILPTSGYTMDRATITQHLLNDQSDPFTRAPLTIDQLVPNVQLKAQVDAWM 1058          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|301120045|ref|XP_002907750.1| (ubiquitin conjugation factor E4, putative [Phytophthora infestans T30-4] >gi|262106262|gb|EEY64314.1| ubiquitin conjugation factor E4, putative [Phytophthora infestans T30-4])

HSP 1 Score: 368.237 bits (944), Expect = 4.545e-113
Identity = 209/487 (42.92%), Postives = 290/487 (59.55%), Query Frame = 0
Query:   21 LLEPDLLDKAMVF---VGGAAAWF--SSQAFDAAA------TPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLA-PALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAE--AEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQR 493
            LL PDLL + + F     G  +     S AFD ++       PD     A     PEHL++DL  ++KF+ R  P++L    L     + +  L+ P  VHSPHLRAK+ ++L+ +FLP EE      +    T G +     L  + LAQ  LAP LL LYGDVEHTGFY+KLEHR++IA +LK+LW+   H+  F RIS D   F  FA+GLMN  N+LV   +  LPEI+ +Q +M+D   W A+ E  R +     +D ER+V+SSL L NETIHM+ YLTS+  +++PF+  P L  RL   L S++ KL G +G+E+KV NP+   F+PK ML+E+  T+LHFA  P+F  A++ +G+Y   +  K    + R   +  + +         V  AAE A    E LG E+P+EFLDPL+ TLMKDPV LP SGY M+R+ I QHL+N  +DPF R PL++  L+P  +LK KIE WV+EQ+
Sbjct:  570 LLHPDLLHEMIRFSLLTCGVVSSICTGSTAFDQSSLDLPLPAPDTETN-ALLKYIPEHLVDDLSSVLKFIARLQPKALAAFELKKLLRMILVFLSSPGYVHSPHLRAKMSEVLFHIFLPSEE------SEERETAGTAFGVELLRTDALAQRHLAPCLLALYGDVEHTGFYEKLEHRYNIACLLKYLWKLEGHKPAFLRISEDRENFVKFAHGLMNHINSLVTDALIALPEIKVLQEEMQDVARWMALDESVREQKQSLLSDKERTVTSSLQLANETIHMMSYLTSE--IQEPFVKMPELEDRLVGMLNSVIVKLTGPRGVELKVNNPEQYKFRPKVMLKEIVETLLHFAQYPSFLEAVATNGFYDGPVFRKCAHIVARTQLLEPSDIPKFETFVVEVEKAAEGAANLEETLG-EIPEEFLDPLVFTLMKDPVLLP-SGYTMDRSCITQHLMNDQSDPFTRVPLTVDQLQPNTDLKTKIEQWVQEQQ 1045          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|1214690002|gb|OWZ05377.1| (Ubiquitin conjugation factor E4 [Phytophthora megakarya])

HSP 1 Score: 366.696 bits (940), Expect = 2.269e-112
Identity = 197/447 (44.07%), Postives = 277/447 (61.97%), Query Frame = 0
Query:   50 ATPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLA-PALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEA--EDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQR 493
            A PD  +  A     PEHL++DL   +KFV R  P++L    L     + I  L+ P  VHSPHLRAK+ ++L+ +FLP EE      +    T G +     L+ +PLAQ  +AP LL LYGDVEHTGFY+KLEHR++IA +LK+LW+   H+  F  IS D   F  FA+GLMN  N+LV   +  LPEI+ +Q +M+D   W A+ E  R +     +D ER+V+SSL L NETIHM+ YLTS+  +++PF+  P L  RL + L S++ KL G +G+E+KV NP+   F+PK ML+E+  T+LHFA  P+F  A++ +G+Y   +  K    + R   +  + ++        V  AAE A    E LG ++P+EFLDPL+ TLMKDPV LP SGY M+R+ I QHL+N  +DPF R PL++  L+P  +LK KIE WV++Q+
Sbjct:  620 AAPDTESN-AVLKYIPEHLIDDLCTALKFVARLQPKALSAFELKELLRMIIIFLSSPSYVHSPHLRAKMSEVLFHIFLPSEE------SEERETAGTAFGVELLMTDPLAQRHIAPCLLALYGDVEHTGFYEKLEHRYNIACLLKYLWKLDGHKPAFLMISEDRENFVKFAHGLMNHINSLVTDALIALPEIKVLQEEMQDVARWMALDETVREQKQSLLSDKERTVTSSLQLANETIHMMSYLTSE--IQEPFVKMPELEDRLVSMLNSVIVKLAGPRGVELKVNNPEQYKFRPKVMLKEIVETLLHFAHYPSFLEAVATNGFYDGQVFRKCAHIVARTHLLEPSDVQKFEVFVVDVEKAAEGAANLEEALG-DIPEEFLDPLVFTLMKDPVLLP-SGYTMDRSCITQHLMNDQSDPFTRVPLTMDQLQPNTDLKTKIERWVQDQQ 1055          
BLAST of EWM24691.1 vs. NCBI_GenBank
Match: gi|953502290|emb|CEG36476.1| (ubiquitin conjugation factor [Plasmopara halstedii])

HSP 1 Score: 364.385 bits (934), Expect = 1.780e-111
Identity = 203/486 (41.77%), Postives = 291/486 (59.88%), Query Frame = 0
Query:   21 LLEPDLLDKAMVFVGGAAAWFSS-----QAFDAAA------TPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCIQALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYTSFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSPEHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKDSPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVRKPFLA-PALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREVALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACTALETAVASAAEKAEA-EDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMERAAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQR 493
            LL PD L + + F    +A  SS       FD  +      +PD+          PEHL++DL  ++KFV R  P++L    L     + +  L+ P  VHSPHLRAK+ ++L+ +FLP +      ++    T G +     L +N LAQ  LAP LL LYGDVE TGFY+KLEHR++IA +LK+LW+   H+  F  I+ D   F  FA+GLMN  N+LV   +  LPEI+ +Q +M++   W A+ E  R +     +D ER+V SSL L NETIHM+ YLTS+  ++ PF+  P L  RL + L S++ KL G +G+E+KV NP+   F+PK ML+E+  T+LHFA  P+F  A++ +GYY   +  K  Q + R   +    ++        +A AAE A + E++  ++PDEFLDPL+ TLMKDPV LP SGY M+R+ I QHL+N  +DPF R PL++  L+   ELKAKIE+W++EQ+
Sbjct:  584 LLHPDFLHEIIRFALLTSAVVSSICTGLNVFDLNSISLPLPSPDVETNRVL-KYVPEHLVDDLCSVLKFVARLQPKALNLFELDGLLKMILIFLSSPSYVHSPHLRAKMSEVLFYIFLPSD------ASDERETAGTAFGMELLRSNVLAQRHLAPCLLALYGDVEQTGFYEKLEHRYNIACLLKYLWKIDGHKSAFFTIAEDRENFVKFAHGLMNHINSLVTDALIALPEIKLLQEEMQNIAQWMALDESVREQKQSLLSDKERTVISSLQLANETIHMMSYLTSE--IQAPFVQMPELEDRLVSMLTSVIVKLAGPRGIELKVNNPEQYKFRPKVMLKEIVETLLHFAHYPSFLQAVATNGYYDGPVFRKCAQIVARTQLLEPNDVQKFETFVGDLAKAAEGAASLEEVLGDIPDEFLDPLVFTLMKDPVLLP-SGYTMDRSCITQHLMNDQSDPFTRVPLTMDQLQSNTELKAKIESWIQEQQ 1059          
The following BLAST results are available for this feature:
BLAST of EWM24691.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106219|gb|EWM24691.1|0.000e+0100.00ubiquitin conjugation factor e4 b isoform 2 [Nanno... [more]
gi|553182543|ref|XP_005853746.1|0.000e+099.80ubiquitin conjugation factor E4 B [Nannochloropsis... [more]
gi|553182546|ref|XP_005853747.1|0.000e+099.64ubiquitin conjugation factor E4 B [Nannochloropsis... [more]
gi|299473683|emb|CBN78076.1|4.473e-15449.32conserved unknown protein [Ectocarpus siliculosus][more]
gi|224003717|ref|XP_002291530.1|5.071e-12243.74predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|635364254|emb|CCI47272.1|2.050e-11945.14unnamed protein product [Albugo candida][more]
gi|325193562|emb|CCA27857.1|1.859e-11845.43ubiquitin conjugation factor E4 putative [Albugo l... [more]
gi|301120045|ref|XP_002907750.1|4.545e-11342.92ubiquitin conjugation factor E4, putative [Phytoph... [more]
gi|1214690002|gb|OWZ05377.1|2.269e-11244.07Ubiquitin conjugation factor E4 [Phytophthora mega... [more]
gi|953502290|emb|CEG36476.1|1.780e-11141.77ubiquitin conjugation factor [Plasmopara halstedii... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5975rna5975Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications