rna5975, rna5975 (mRNA) Nannochloropsis gaditana

Overview
Namerna5975
Unique Namerna5975
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1589
Alignment locationCM002467.1:258735..260480 +

Link to JBrowse

Properties
Property NameValue
Productubiquitin conjugation factor e4 b isoform 2
Orig transcript idgnl|cribi|Naga_100076g24.8799.mrna
Orig protein idgnl|cribi|Naga_100076g24.8799
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:258735..260480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100076g24gene5773Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5975rna5975-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24691.1cds5960Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5975 ID=rna5975|Name=rna5975|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp
GCCTTGCAGTTTCAAGTGGTGGTGCATGACGTCTCCCTTCGGTGGAGGTT
GTTCGCGGGGAGGGACTGGGGAGAGAGGGAGGGGAGGAAGGCGTTGGGAG
GGAGGGAGGGAGGGAGGGAGGGGGAGGTTCGAGCGCCACGCGGGAAGCAC
CTGGAGGAGCTGTTGGACGGGGGGGAAGGAGGGAGGACGCCGGGGAGGGG
CCAGGGCCGGCGGAGGCGGCGGCGGAGGAAGAGCGAGGGCCGGCAAGTCG
GGTGCATGATGGAGGTGTGCCTGAGCCACGCCCGCCTGCAGCATGCGAGT
TTTATGCCCGGGCAGACACGGGCAGCGCGGAGCCGAGTGTGGGTGTCGGA
TCTCTGTGTCTTGGACCGAATCATCTCGGTGCAGCCGCGGCGGGTCTTGG
GCTACTGGCGCTCCGACAGGGAGCACCCCCGGGACGGAACGGCGCCCATG
CTCCAGGTGGACGTGTCGGCATGGACCCCTCGGTACGACGCCTCGGTGGT
GCAGGGGAAGGGGGGGGGGGCGGACGCGGGGGGGGGCGGGGAAGGGGAAG
GGGCAGGCGGGAGGGAGGGATCGGGGGAGGCGCCGGTGGAGGAGCTGACT
CTGAGGGTCCGGCTTCTGCCCCTCCGGGTCCTTGTGGACCGACACACGAT
CGACTTCGTGTCTAATTTTTTCGCCCTGGTCGACGCCTCCGCCCGTACCT
CCCCCCCGCCCTCCGCCGGCACCTCCCCTGCCCTCCCCTTGGAGCACCTG
GCTTTCTTCCAGTCCGTCCTCGTCCGTCCAGTGAAAGTGAAGCTCGACAC
GCAGACCCGGCCCCTCAACCTCCGGGAGGTGCAACGGGGGAATTACGCCG
AGCTTTTGAATTTGTGTCCATTGAAAAACGTCAAACTTCAACTGGCGGCC
GTTACGCTTCGGGGGATTTCGGGGTGGGCGGCGATTGGGGAGGGCGTGCG
GGAATCCTGGGTGCGGGACGTGACCGAGAAACAAATGTACCGCCTCCTGA
TGGGGCCCTCCCCGATCCGATCCGTCTTCAACATGGGTTCGGGCGTCGCA
GATTTGATATTGCTTCCCCTGGAGCACTACCGGAGGGATGGGCGGGTGTT
TCGAGGCTTGAGGAAAGGAGTGATCCGCTGCCTGCGCAACGTCAGCATTG
AGGCCTTGAACGCCTCGGTGGGGATAACCAGGGCGGTGGCTTCCACGCTG
AACGACCTGGTCGCCCTGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGG
GCGGGAGGGAGGACAGGTATGGGTCCAAGCGGATTTGCAACCGAAAGGCA
TGCGGGAAGGTCTGGAGCACGCCTACGACACCTTAAGTAAGGGCTTCAGC
ACCGTAGCTCACACCATCATCGCCGTGCCGATCCAAGAGATGGAGCGGTC
GGGGCCCCAAGGGAGCGTGCGGGCCGTCATTCGCGCCCTGCCGATCGCGG
TGGTGAAGCCCGTGGTGGGGGTTTCGGAGGCACTCTCCATCACATTGCTG
GGGGTGCGGAACAAGCTGGATCCGGGGAGTCGGAGGGAGGAAGAGGAGCT
CTGGCGGGTGTGAGGGAGGGAGGGAGGGAGGGAGGGAGG
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protein sequence of rna5975

>rna5975-protein ID=rna5975-protein|Name=rna5975|organism=Nannochloropsis gaditana|type=polypeptide|length=508bp
MTRILFPSPAFPFPSPQEISLLEPDLLDKAMVFVGGAAAWFSSQAFDAAA
TPDLAAALAFCSRCPEHLLEDLLVLVKFVGRAHPQSLLTAPLAPFFDLCI
QALTRPQLVHSPHLRAKIGDLLYLVFLPPEERLDHSSTSAAATRGHSVYT
SFLLNNPLAQASLAPALLLLYGDVEHTGFYDKLEHRFHIAAVLKFLWRSP
EHRRTFRRISSDTSQFTSFANGLMNETNALVASVMEKLPEIRSVQLQMKD
SPAWAAMPEESRNEIMERHNDNERSVSSSLLLCNETIHMLMYLTSDEAVR
KPFLAPALSPRLANTLLSIVDKLVGTKGLEIKVENPDALNFKPKEMLREV
ALTILHFAGEPAFHTALSESGYYHEGMLGKVQQTMKRVGGMSEAQLEACT
ALETAVASAAEKAEAEDLGVEVPDEFLDPLLCTLMKDPVRLPTSGYAMER
AAIEQHLLNQPTDPFNRQPLSLTDLEPLPELKAKIETWVEEQRLSKRKEK
EEKEAHGV
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mRNA from alignment at CM002467.1:258735..260480+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5975 ID=rna5975|Name=rna5975|organism=Nannochloropsis gaditana|type=mRNA|length=1746bp|location=Sequence derived from alignment at CM002467.1:258735..260480+ (Nannochloropsis gaditana)
ATGACACGgattctctttccttcccccgctttccctttcccttcccccca
ggaAATTTCCCTTTTGGAGCCCGACCTCCTCGACAAGGCCATGGTCTTCG
TGGGCGGGGCCGCCGCCTGGTTCTCCTCCCAGGCTTTCGACGCCGCAGCC
ACGCCCGATCTGGCCGCAGCCTTGGCCTTTTGCAGCCGATGCCCGGAGCA
TCTCTTGGAGgacctcctcgtcctggtcAAATTCGTGGGACGGGCGCACC
CGCAGAGCCTCCTGACGGCGCCGCTGGCGCCTTTTTTTGATTTGTGCATC
CAGGCGTTGACCCGGCCCCAGCTCGTGCACTCCCCCCATTTGCGCGCCAA
AATCGGCGATTTGCTCTActtggtcttcctcccccccgaggaGCGGCTCG
ACCACTCGagcacctccgccgccgccacccgaGGCCACAGCGTCtacacc
tccttcctcctcaacaaCCCCTTGGCCCAGGCATCCctcgcgcccgccct
cctcctcctttatgGGGACGTGGAGCACACGGGCTTCTATGACAAGCTCG
AGCATCGCTTCCACATCGCTGCCGTCTTGAAGTTCCTCTGGAGATCTCCC
GAACACCGGCGGACCTTCCGAAGGATCTCCTCCGACACCTCTCAAttcac
ctccttcgccaaCGGCTTGATGAACGAAACCAACGCTCTGGTTGCCTCCG
TGATGGAGAAACTCCCCGAGATCCGATCCGTTCAGCTCCAGATGAAAGAC
AGCCCGGCGTGGGCCGCCATGCCGGAAGAGAGTCGGAACGAAATCATGGA
GCGGCACAACGACAACGAGCGCAgtgtctcgtcctccttgctcctctgCA
ACGAGACCATCCACATGCTCATGTACCTGACCAGTGACGAGGCAGTCCGC
aagcccttcctcgctcccgccctctccccccgcctggcCAACACCCTGCT
TTCGATCGTAGACAAGCTGGTGGGGACGAAAGGGTTGGAGATCAAGGTGG
AAAACCCCGACGCTTTGAATTTCAAACCCAAGGAGATGCTCCGGGAGGTG
GCCCTGACCATCCTCCATTTCGCCGGGGAGCCTGCCTTCCACACCGCCCT
CTCCGAGTCGGGCTACTACCACGAAGGGATGCTTGGCAAAGTCCAGCAGA
CCATGAAACGGGTGGGGGGCATGAGCGAGGCGCAGCTTGAGGCATGCACG
GCCCTGGAAACCGCcgtggcctcggcggccgaaaaggcagaggcggagga
tttgggcgtggaggtgccGGACGAATTTCTGGACCCCTTGCTCTGCACGT
TGATGAAAGACCCCGTGCGGCTGCCCACATCCGGCTACGCGATGGAACGG
GCGGCGATCGAACAACATTTGTTGAACCAACCTACGGACCCGTTCAACCG
TCAGCCGTTGAGTCTAACGGATCTGGAGCCGTTACCAGAATTGAAGGCGA
AGATTGAGACATGGGTAGAGGAGCAGCGATTgtcaaaaaggaaagagaag
gaggagaaagaggcgcaTGGTGTTTGAGATGATAACAGGATTGAGCCTAT
ACTTGGAGTCTGGGTGACGCGTTTCGCAGACGAGGAAGTAGGAGGGGCTG
CTCTGGAGTAGACGGATGAGAGGACTTGCGATGGGCGATTTCACGCGCCA
TGGCGACACGGCCTTCCCTCTAGAGTGACGAAGTACattggaaaaaaaga
agtaAGCAAGATAGGGTAGCACGCCGGCCCAAGAGGTGGACAACGG
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Coding sequence (CDS) from alignment at CM002467.1:258735..260480+

>rna5975 ID=rna5975|Name=rna5975|organism=Nannochloropsis gaditana|type=CDS|length=1527bp|location=Sequence derived from alignment at CM002467.1:258735..260480+ (Nannochloropsis gaditana)
ATGACACGgattctctttccttcccccgctttccctttcccttcccccca
ggaAATTTCCCTTTTGGAGCCCGACCTCCTCGACAAGGCCATGGTCTTCG
TGGGCGGGGCCGCCGCCTGGTTCTCCTCCCAGGCTTTCGACGCCGCAGCC
ACGCCCGATCTGGCCGCAGCCTTGGCCTTTTGCAGCCGATGCCCGGAGCA
TCTCTTGGAGgacctcctcgtcctggtcAAATTCGTGGGACGGGCGCACC
CGCAGAGCCTCCTGACGGCGCCGCTGGCGCCTTTTTTTGATTTGTGCATC
CAGGCGTTGACCCGGCCCCAGCTCGTGCACTCCCCCCATTTGCGCGCCAA
AATCGGCGATTTGCTCTActtggtcttcctcccccccgaggaGCGGCTCG
ACCACTCGagcacctccgccgccgccacccgaGGCCACAGCGTCtacacc
tccttcctcctcaacaaCCCCTTGGCCCAGGCATCCctcgcgcccgccct
cctcctcctttatgGGGACGTGGAGCACACGGGCTTCTATGACAAGCTCG
AGCATCGCTTCCACATCGCTGCCGTCTTGAAGTTCCTCTGGAGATCTCCC
GAACACCGGCGGACCTTCCGAAGGATCTCCTCCGACACCTCTCAAttcac
ctccttcgccaaCGGCTTGATGAACGAAACCAACGCTCTGGTTGCCTCCG
TGATGGAGAAACTCCCCGAGATCCGATCCGTTCAGCTCCAGATGAAAGAC
AGCCCGGCGTGGGCCGCCATGCCGGAAGAGAGTCGGAACGAAATCATGGA
GCGGCACAACGACAACGAGCGCAgtgtctcgtcctccttgctcctctgCA
ACGAGACCATCCACATGCTCATGTACCTGACCAGTGACGAGGCAGTCCGC
aagcccttcctcgctcccgccctctccccccgcctggcCAACACCCTGCT
TTCGATCGTAGACAAGCTGGTGGGGACGAAAGGGTTGGAGATCAAGGTGG
AAAACCCCGACGCTTTGAATTTCAAACCCAAGGAGATGCTCCGGGAGGTG
GCCCTGACCATCCTCCATTTCGCCGGGGAGCCTGCCTTCCACACCGCCCT
CTCCGAGTCGGGCTACTACCACGAAGGGATGCTTGGCAAAGTCCAGCAGA
CCATGAAACGGGTGGGGGGCATGAGCGAGGCGCAGCTTGAGGCATGCACG
GCCCTGGAAACCGCcgtggcctcggcggccgaaaaggcagaggcggagga
tttgggcgtggaggtgccGGACGAATTTCTGGACCCCTTGCTCTGCACGT
TGATGAAAGACCCCGTGCGGCTGCCCACATCCGGCTACGCGATGGAACGG
GCGGCGATCGAACAACATTTGTTGAACCAACCTACGGACCCGTTCAACCG
TCAGCCGTTGAGTCTAACGGATCTGGAGCCGTTACCAGAATTGAAGGCGA
AGATTGAGACATGGGTAGAGGAGCAGCGATTgtcaaaaaggaaagagaag
gaggagaaagaggcgcaTGGTGTTTGA
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Synonyms
Publications