rna5970, rna5970 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5970
Unique Name	rna5970
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1750
Alignment location	CM002467.1:244500..247783 -

Link to JBrowse

Properties


Property Name	Value
Product	zinc-binding integral peroxisomal membrane protein PEX12
Orig transcript id	gnl\|cribi\|Naga_100978g1.1502.mrna
Orig protein id	gnl\|cribi\|Naga_100978g1.1502
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:244500..247783 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100978g1	gene5768	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24718.1	cds5955	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5970	rna5970-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:244500..247783-
coding sequence from alignment at CM002467.1:244500..247783-

mRNA sequence

>rna5970 ID=rna5970|Name=rna5970|organism=Nannochloropsis gaditana|type=mRNA|length=1750bp
TAGTCGCTTTCTCCACGCGTTTTTGCTCTTCGACGTCGAAACTGTGACCG
TCCCACACTTCCAGTAATAAAATCTGTCATGAAATTTCTTCGTTACTACA
CTTCATACTAGGCCGCAAGCTACGGCGTGCCGTTTCCCGCCCTCTCCCCC
TCCCTCCCTCCTCCTCCTACTGCCGGCCTCTCCTTTCGGCACCGCCTTAC
GCTAGCACCATGCCACAAAGGGGAACTCCACCGCCTGTAGTTTTGCGCCG
ACCGATAATTGGCGTCATGGGTTCTGGAAGGGAGCCTCACGTAGGCCTTT
CGGCGCCGTTGGGCTCTTGGCTGGCATCCACGGGCTGTAACCTTCTGACT
GGCGGGGGCAGAGGGGTGATGGAGTGCGTCTCGCGAACCTTCTCCGAGAC
CCCGGGCCGAGAGGGACAGATAATAGGCGTAATTCCTGCCTTGCCTGGGG
CTTCGAACGAGGATAGTGTCATCCCGCCGGCAGGCTACCCAAACCCGTAC
ACCGAGATCGTCATCCGCACTCAATGCCCCCTCTCCATGCACCCTCTGAC
CGGGACGGAGCTCACGTCCCGGAACCACATCAACATCCTCTCCTCCGACA
TCGTTGTGGCCCTTCCCGGCTCGTCAGGGACCTGGAGCGAGATCCAGCTG
GCGATCCGATACCGGAAGCCGCTCATTTTGTTCCTGGGCGAGGACGGCGA
CGATATCGATCTTGCCATGGATGGGGTCGAGGACATCAAGGTGGCCAAGT
CCATGGGGGAGGTCCGCCTCTATGTGGAGGAGGCTTTGGAACGACGTCGC
CTTCGCGCCACCTCCCAGCCCCCGCTCTTCGCCTCCTCTTCCTCCTATTC
TTCCTCCTCCTCCCCCAACGCGGGCGCGGCGGCCGGAGAGAAATCGAACG
GGACCGCGATGAGTGGCGAGGAAGGAGAGAGGGAAGGAGGTGTGGAAAAG
GGGAGGTTGGGGGAGGAAGAGAGCACGGGTCACCTCCTCGTGAAGGCAAC
AGCCGAAGGACAGCCTGGGAAGAGGGAGGAGGAGGGGGGGGAAAGACAGG
AGGAGAAGGGAGGGAAGGACGGGAGGGGGGAAGTAAGAAGGCGAGAGGAG
CCTGTGTCCTGAGAAGGGGGAGGCAGGGGCGACGGAGGGGGAGTGGATGT
GGTCGGAAGAGGGTAGCGGCACGCATTGTAGGAAGAGGGTAGCGGCACGC
ATTGTAACATGTTTTGACATTCAAGGTGGAGTGGATCGTCCATGCTTGAA
ACGGGAGGGAGGCCGGGGAAGAAGGAGAGCGGACGTGTTGAAGTGGGATG
ATGGATCCGGAGGGGGAGCGGAGGCGGTGGCAGGTGGGACAGGGGCAAAG
AGGAGGCAAGAGGCAGGAAAGGAGGAGGAGGAGGAGGAGAGTCGTCGTTT
GCCCGGGTCCCTCCAGGCTCTGGATGGGGGGCGGGGGAGGAGGATTGCCT
CGGGGGGCGGAGAGAGGGAGGAGGCGGTGGCGGAGGAGGAAGGCTTAGGG
AGGTCAGGAGGGAGAAGGGGAAGGAGGGAGGTACTGCTACGCAAGGAGCG
TGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAG
GGAAGGAGGGAGGGAGGGGAGGGAGGGAAAGAGGGAGGGAACGATGGAGA
GATGCCCCCCAAAAAAAGCGACAAGGGCTTGCAGAGACCCACTCACAAAT
TAAAAAGATACGAATCCCAAAGAATACCTTGGCTCGTGACAGTCACCTTA

protein sequence of rna5970

>rna5970-protein ID=rna5970-protein|Name=rna5970|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MEIYMFTPQESPLLRPSHGNMSIGGMFLAHEMGTDPHYPSFFEVFMQDRI
HQSLKPAVRHVFLVLAERWPQAVVLLDHLDEVFAIMSLFLERHYLAKNDA
LFSESLYGFKRSRYRSQEGTGPRNEQHRKADNSNTSNVTGQSEHMKMSAL
TQGDRRLALLVTILAPYAKAKLDALYIHYKDTLLPSPVVNRRSWWGGNGS
SRGQGRRWRSGRGESGTAGGAAHSGVEGEEDEQKEEIRVRLRRVFVAMYP
LLHAAYEGSFFVYQWTYLLGRRKQYSPLLHIAGQVLRRLSQEDVQPPAPS
ITEKKSLTARLVRSFKVLLLLGIVAFKLLEWWMSSPDFLQSPRQKRIVPP
VPDPPAPAPTGVPLPKDAVLCPLCLRPRVNPAVTSAGVVFCYKCLLPEVR
KAGVCPVTLQPCREEQVRRIYLT

mRNA from alignment at CM002467.1:244500..247783-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5970 ID=rna5970|Name=rna5970|organism=Nannochloropsis gaditana|type=mRNA|length=3284bp|location=Sequence derived from alignment at CM002467.1:244500..247783- (Nannochloropsis gaditana)
GCGTAGCTCCTGTTCTGTCATAGCTGGCTTTTTCCCTTTCGCGAACCCCT
TAAAATGGATCAAGAGGACCTCCAAATCCTCGACGAGAATCCTCACGAGG
TATTGGCGACATTTAAAAGTGCATATGAATCCCAAACATAAAACTGTCAC
AGCGCAAGGTATTTAATTTCGTACTTTTGGAAGCCCGTGGGTTCATAGAA
TATCCAGCTGCTCTGTACAGGAGTGGGGAGGTTATGCCTGAAACACCGTC
TAAGGATTAAGACATGACCGTCCTCCACAATTGCTTTCCACGCGCTCGAC
ACAAGTTCCTACTGGCTTGCGATAATCCCACTTCAAATCCTCAATTTACC
TGCTCGTGACTGGATCCAGGCAGTGAATCAGCATGAAAGCTGGCCTGGAG
GGTGAGAAGGGACTGTTGACTCCCGTCCTCTCCTCCCATTCACCTTAAAT
TGGATTTCAACCACATATGACTTGATATAGACTCTATACATCTTTTACAC
CCTCTTTGCCCCCCCGTCCTTCTTTTTAGCGCTCTGCACTCTTTCGTACT
GGCCTGTACGGATTTCTCAAGCGGTTTTTCCCCTCCAGAGTCTCCTTCAC
TCGCCATCAGGGTCTTTGGTAATACAGGTCTTCTCAAGAATGTACTTCCC
CTCCTTGTACTTCTGCGACTCCTCAAAAGCCTCCTCGTACTTCCATCCCA
GTAAGGCCTGGGAGAGTGTATGATTGCCGCGTGGGCGTCGGAGCACACAG
AGGGGGCACGGGTGAGAAACATTAGACAGAAGGACTTTTAGGGAAATTGC
ATTGCATCGCACCTTGTCTTCTCCTGCGCTTTCATGCAAAAGCAGTCACG
ACATAGTCGCACACCATCCAATCCACCCCATGCTCCTCGACTACCAGGTG
CTAGACTCCCGCCTCGCTCAAGAGAACCCTCCTTTTCCACCGTCATATTC
CCGTGACCATAGACCCGTTCTCTTCCCATACCCTACCTGGCAATCCAAGC
AAAAGATGTCCGCAACAGTGTGTAAACCCGTAATGAGCATCCGTTTCTCG
TGCTGTCCCGTCGTGACATTGATGCTGTACGTGGGGAGGACGAATTCACC
TCAGACGCTCTTGCCCGGACCTCATGGCACATCAGCCATCTTTCACTGAA
TCTCCAAACAAAGTACTCACACTTTATCGTACAAAAAAGCACGGCCTCCA
CGGCCCGTGAATTGCTTTGATATTATTTGGTCATTCGTCGACAGGTGCGT
CCAGCATTGAGAGCAGCACCAGATTTGAGGCCCGTCAAGGTACCTAGATG
CAGACGAAGCCAGGAAAGAAAGGCACAATTGGAGCATGGTGCAAGCAAGA
AGGGGTAATATGGCACACGATTTTACCTTTTGAAGAGGCGCCCCATTTTT
GAAACGCTTGATACACAGACGTCTGTGCTCAAGCACAAACCGGAACTTGT
CTGGAACAATTAGTGGCTATTCGATGCCGAAGCAACTGACACTCCCACTG
CCGACAACTGCCGCTTCTTATTGAAGTTATTGGACGTTTCCTGGCACCAT
GTGCTGACTGTTGTTTTGAAGGATAATGGGGGTGGATGCCGCGAGGAAGG
AGGTGGACATCACATCTCTCAAGTTCTTCCCATTGCGTCGTTTAAAGGCA
AACAAACATAGCTTCTCAAGAATTCTACTCATCACATGCAAGCTATTGAA
CACATACTTGTACAGTGTCATGTCTGCTCCGTAACACACTGATTTCAGCG
CCGCAACCCCGCAGATTGGGGGGTGTACTTGAACAGATGACGCGATGCCG
TGGATGTGATGGAATATGCCCCTTCGTCTCCCACCCAATAGGATCCCTAT
ATTATACACCGCACGTTGTCCTACGACTGACTTTTAATGGAAATATACAT
GTTTACTCCACAGGAAAGCCCGTTGTTGCGTCCTTCCCACGGAAATATGT
CGATCGGGGGCATGTTTTTAGCCCATGAGATGGGCACTGATCCTCATTAC
CCTTCGTTCTTTGAGGTTTTCATGCAGGATCGTATCCATCAAAGTCTTAA
ACCGGCCGTCCGCCACGTCTTCCTCGTTCTTGCCGAACGTTGGCCACAAG
CTGTGGTTCTTCTTGACCACTTGGATGAAGTTTTTGCGATCATGTCTCTT
TTTCTGGAGAGGCACTACCTAGCCAAGAACGATGCTCTCTTTTCCGAGTC
CCTGTACGGATTCAAACGATCGCGGTACCGCTCCCAGGAAGGGACAGGCC
CAAGAAATGAGCAACATAGAAAAGCAGACAACAGTAATACCAGTAATGTG
ACCGGGCAATCCGAACATATGAAGATGAGCGCTTTGACGCAAGGGGACCG
GCGGTTGGCTTTGTTGGTGACAATACTGGCACCGTATGCGAAGGCAAAAT
TGGACGCTTTGTACATACATTACAAGGACACTCTTCTACCGTCTCCAGTC
GTCAATCGGAGGTCGTGGTGGGGCGGAAATGGGTCGAGTCGGGGGCAAGG
GAGGCGTTGGAGAAGTGGAAGGGGCGAGTCCGGCACGGCGGGCGGGGCCG
CGCATTCGGGCGTAGAGGGGGAAGAAGATGAGCAAAAGGAGGAGATACGC
GTCCGTCTCCGTCGTGTCTTTGTGGCCATGTACCCCTTGCTGCACGCGGC
CTACGAAGGCTCCTTTTTCGTCTACCAGTGGACCTATCTCCTCGGCCGGC
GCAAGCAATATTCCCCCCTCCTCCACATCGCCGGACAAGTCTTGCGCCGC
CTCTCCCAGGAGGACGTGCAACCTCCCGCCCCCTCCATCACGGAAAAGAA
GAGCCTGACGGCCCGGCTGGTCCGCTCCTTCAAAGTCCTCCTGCTACTGG
GCATCGTTGCCTTCAAGCTTCTCGAATGGTGGATGTCCTCCCCCGACTTT
CTCCAATCCCCCCGACAAAAACGCATCGTCCCGCCCGTCCCCGACCCTCC
CGCGCCCGCCCCCACCGGAGTGCCTTTGCCCAAGGACGCAGTCCTCTGCC
CGCTCTGTCTCCGTCCACGGGTCAATCCAGCCGTCACCTCGGCCGGCGTC
GTCTTCTGCTACAAGTGCCTCCTCCCCGAGGTCCGAAAGGCAGGGGTGTG
TCCGGTCACCTTGCAGCCTTGCCGGGAGGAACAGGTGCGACGAATATATC
TGACTTAAAAATAGGAACGCGCGGCTGTTGAATCATGTACATACGGGTGT
AAAGAGGAACTGTTTGAGGTGGGAGGTGGGGAAGCTGCCCGCGCGAGGCT
GATTAGAGGGGAAGGAAACGTCGACGGGCAACGA

Coding sequence (CDS) from alignment at CM002467.1:244500..247783-

>rna5970 ID=rna5970|Name=rna5970|organism=Nannochloropsis gaditana|type=CDS|length=1272bp|location=Sequence derived from alignment at CM002467.1:244500..247783- (Nannochloropsis gaditana)
ATGGAAATATACATGTTTACTCCACAGGAAAGCCCGTTGTTGCGTCCTTC
CCACGGAAATATGTCGATCGGGGGCATGTTTTTAGCCCATGAGATGGGCA
CTGATCCTCATTACCCTTCGTTCTTTGAGGTTTTCATGCAGGATCGTATC
CATCAAAGTCTTAAACCGGCCGTCCGCCACGTCTTCCTCGTTCTTGCCGA
ACGTTGGCCACAAGCTGTGGTTCTTCTTGACCACTTGGATGAAGTTTTTG
CGATCATGTCTCTTTTTCTGGAGAGGCACTACCTAGCCAAGAACGATGCT
CTCTTTTCCGAGTCCCTGTACGGATTCAAACGATCGCGGTACCGCTCCCA
GGAAGGGACAGGCCCAAGAAATGAGCAACATAGAAAAGCAGACAACAGTA
ATACCAGTAATGTGACCGGGCAATCCGAACATATGAAGATGAGCGCTTTG
ACGCAAGGGGACCGGCGGTTGGCTTTGTTGGTGACAATACTGGCACCGTA
TGCGAAGGCAAAATTGGACGCTTTGTACATACATTACAAGGACACTCTTC
TACCGTCTCCAGTCGTCAATCGGAGGTCGTGGTGGGGCGGAAATGGGTCG
AGTCGGGGGCAAGGGAGGCGTTGGAGAAGTGGAAGGGGCGAGTCCGGCAC
GGCGGGCGGGGCCGCGCATTCGGGCGTAGAGGGGGAAGAAGATGAGCAAA
AGGAGGAGATACGCGTCCGTCTCCGTCGTGTCTTTGTGGCCATGTACCCC
TTGCTGCACGCGGCCTACGAAGGCTCCTTTTTCGTCTACCAGTGGACCTA
TCTCCTCGGCCGGCGCAAGCAATATTCCCCCCTCCTCCACATCGCCGGAC
AAGTCTTGCGCCGCCTCTCCCAGGAGGACGTGCAACCTCCCGCCCCCTCC
ATCACGGAAAAGAAGAGCCTGACGGCCCGGCTGGTCCGCTCCTTCAAAGT
CCTCCTGCTACTGGGCATCGTTGCCTTCAAGCTTCTCGAATGGTGGATGT
CCTCCCCCGACTTTCTCCAATCCCCCCGACAAAAACGCATCGTCCCGCCC
GTCCCCGACCCTCCCGCGCCCGCCCCCACCGGAGTGCCTTTGCCCAAGGA
CGCAGTCCTCTGCCCGCTCTGTCTCCGTCCACGGGTCAATCCAGCCGTCA
CCTCGGCCGGCGTCGTCTTCTGCTACAAGTGCCTCCTCCCCGAGGTCCGA
AAGGCAGGGGTGTGTCCGGTCACCTTGCAGCCTTGCCGGGAGGAACAGGT
GCGACGAATATATCTGACTTAA

Synonyms

Publications