rna5968, rna5968 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5968
Unique Name	rna5968
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3008
Alignment location	CM002467.1:240054..241467 +

Link to JBrowse

Properties


Property Name	Value
Product	Zinc finger, C2H2, LYAR-type
Orig transcript id	gnl\|cribi\|Naga_100180g9.4037.mrna
Orig protein id	gnl\|cribi\|Naga_100180g9.4037
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:240054..241467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100180g9	gene5766	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5968	rna5968-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24724.1	cds5953	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:240054..241467+
coding sequence from alignment at CM002467.1:240054..241467+

mRNA sequence

>rna5968 ID=rna5968|Name=rna5968|organism=Nannochloropsis gaditana|type=mRNA|length=3008bp
ATACAGAAGCACGCGCGGTACATATCCTCTGGGTGCTATTGCCCTCTCCT
TTGCCGGCTGCAGGAGTGGAGAATCGGTAGCTGTGATCGGATAAAGTTGA
AGTAAAGGAAGATTTATATCACCGCATTACGTTGTATTCAATTAAAATTT
GATTGACCGACAGGGTCAGGAATGGAAAAGCCTGAACAGCACGCAGTTGA
TAAGAATGATCTGCCCCGTCATCAATTGAACCGGCCGGCCAGGCTATCCA
TGGAACTTGTCGACTCACCCACGAATGAGCCTCTACCTGTCACTGGGAGC
ATGAAGGGTAATAGCGATGAGACTAACCCCAGCACGTCGCCGATGGGAAC
GATTCGCGTCATGTCAGAAAGACTAGGAAATTCTATCTACGGTAAAAAGG
AGAGGAAGAAGAAGGCCGACTCAGCTTTCTCTTCGTCATTGAGAGTTATC
ACAGGGCCTTTCATCTCGTCAACAACAAAAACCAAGGTGAATGTATCTTC
CCCGCTCTCTAGAGAAATGAGTCCCCCTCCACACACCCCTAAGAAGGATG
GGGCCGTGGAATGTGAAGGAAGTAACGTTACTCCCGGCGAAGTCGACAAC
AGCCGGGATACATCCATGAGCTCTTCTCTCCATGACAAGCTCCATTCACT
GGGGCCTGGAGAATTGGAAGATCTGCCCTTGGACAGTAGCAAAGGTGTTT
TCGAAAGCTGCGCTCCGTCCTATTTTGAGACCGACGACGACGAAGAGCGA
AAAGACGAACCTTGTTTCTCTCCTAAAGTAAGAAGTTACAAAAGTGCGGG
GGCAGGCCCTGGTGGATCCCTTCTTCGGCCTTTAAGTCCAATTGTCTTGC
CGGTGCTTCGCAGCCCGCGCGTGCGGCGGATCTTCGGGCCTGAAAAAACC
GACCGGGTCGCAACCCTCTTCGAAAGCTCCAGCACGACAGAGCCCCAGCA
TCCCTTCGCATCCTCTTCCGTACCTTCAAGCTTTCCATCGGCCGCCACAC
TGAGCACCGAGGCCCCGGCGAGACCCCTGGGATCCGCCCATGTCGCATCG
TCTTCTGTCTTGCCCCCCAAACAGCCCCCCGCCACCTTCTCCAGGGTGAC
TCCCATGCCCTGTCGCGACGAGGCCACTGCGCCTCCTTTGCCGCACCCAA
GCTCTTCTGCATCTTCTGCGCACAAGCCGCCTCGACTCCCGCCCTCATTG
CTCGCATCGGCAGCCGCTACAAATCCTACCACCAGCCAGTCCCGGCGGCC
GTCCCTCTATTACGTGGGGGGACACAACAATACCGTTTTGCAGCAAAATT
TCACCGTCGCCCTGGGCCTGTGCCTGCTTGCATGTGGACTCAGTCAAGCG
GGGTTGGAGTGGTACACGATGGTGCTCGGAAGCGACTATACCACTTGGTG
GGCAGGTTTGCTCTGTGCGGGGTTGGGGCTCGCGACCATGGTCTCGCAGA
GGCGGAGGACGATCGTCAGCGGCGACCACGATAACGTGGACCGGGCAGCA
TCGGTGCAGGCTCTGAAAAGGCTGGTAATGCGGGGGCTCTATGCCCTGTT
GCTGGGTGGGGGAGCGGGGGCGGTGGTGACTGCCCTCTTCTTCGACCTCG
ACTTCCTCGACAGGTTGGAGCACCTGGACATGTGCGGCGCCAGCTCGGAT
AAATTGGTCTTGGACAACGGCCTGGTCCTGGGGGACACCCTCGGCAATGC
GTGTGCTTTCTCTTCGGGCTGCGCCTGCGTCCAATTTACACACCCGCTCC
CTGAGGGGGAAGTAGCTTGTCTCAATTTTCCTCGTTCCGCCTCCAGCAGC
TGTGCGAAGGCGCCTTTCCTCATCGCTAGCATAGTGCGGGTCAGCGTCTG
GCTTATGGGCGGTATCTTGTTCTTCATGACCATCCTCCTACTCCGCGGCC
GGGCCGCAGTGTGCAGTGCGTACGGGGAAAGGGCCAACCAGGCGGAGGGC
GCGAAGGGCGGGATCAGCAAGGATTCGGAACGCGTAGTCTCTTCGTTTGG
AAGCAGCAAAGTCCGTTCCATGTCTGCGGCGAACAGGCGTCGCTCCCTCT
CCCAAGAACAGCCTCCCCCACAGGGGCAAGTGGAGGGGCGGCAATCCTGG
TGGCAGACCGGAGACGAGGACAGTAGCAGCGACGAGGAAGGCGAGGAAGA
GGTGGTGATGGTGGTGCAAAGGGAGAAGGGAAAGGTCGGAGTAGCCTTGA
AGCCTGAAATGGAGCCGCCGCGGGACGGGGGACGCAGCCACTTGTTGACA
CCCATCCCGGAATGCCACACCCCCATGCCAGAAGAAGAGGCAGACGGGAA
CGGGACCAGGTCGAGGAGGAGTGACGCTGACGAACCAAATCGGGTGGTAA
GGTCGCCCCCGCAAGAAGTGGAGTACATTTAACAAGCGCATGGCGTCGGC
TGGATTAGATAGGAAGGATTGTATTTTTCGGTGAGAGTCGAGTGGGACAC
TCTGCTCTTCAAAGTCTGAGCCAGCACGATGGCCTCCTTCATGGCCTATG
TTCATATTTCACGTAAGTTGATTGCATGGTTGATATTTATTGCAAAACTT
CAAACAAAAAAGGAGAACTGTACGTCCTTTCTGCCGTTGACTTCAATCCA
ACTTGAAGGGGTAGCCATCCCTTGGAAACAGAAAATAGTTACATGAACCT
TCCTTGTGACCCGTCAAAAGCTCGCCATCTAACATTTTTACAGCCTTCCA
CTCGCTTGTATATGCCTTTTAGATGGTTTTGGGTCGATCTTACAACGTGG
CACCCTTTTCGTATTGCAATGTCTTTAACATACTACCATAATAAACGCGT
TTCCTGATATTGCTGACATGAGTGTTGAGAACCAATTCAAGACATCCGTT
TGTCATAAATCGTCTATCAACGCATTCATCTCCCTCCAAATCGGGGAGAA
GACGCTTGTCAACGAGCCTCGATTTCCCAGTGACCCCTTCAGGACGCATA
TCGCTTGTATCCAACACTAGCTCTTAAGCTCCACAAGAAGAATGGATGGA
CGAGTGCC

protein sequence of rna5968

>rna5968-protein ID=rna5968-protein|Name=rna5968|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHT
SCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETG
GVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLK
GKMDENKPAAEAPSGQVMADKAEEGKKEGTTRTMRAASKPEDDGQVSSPS
TDKIEKGFEKGEKKRKKKRTKKRRQAERSRSLPPRSMSTRSERKIRLRRQ
RA

mRNA from alignment at CM002467.1:240054..241467+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5968 ID=rna5968|Name=rna5968|organism=Nannochloropsis gaditana|type=mRNA|length=1414bp|location=Sequence derived from alignment at CM002467.1:240054..241467+ (Nannochloropsis gaditana)
TATGCATGTCTTGATTGCACCCTCATGGTATTTTGCCGTCCCTTTGCTAT
GCACAGGTGCTCCTTGACGCAAATACTAAGAAAGATACATAGTCTTTGAG
CACAGGACTGCCCTGATACATGGTTTTCTTCTCCTGTGAAGGCTGCAACG
AGACTCTTAAGAAGGCACAGGTAGAGAGCCATCTGCGTCGTGCACTGTGC
TCCCGTTACCCAGTATCGTGTGTCGACTGCAGCCAGGTTTTTCCAGGGTC
GTCCTACCAGGCACATACCTCATGCATTTCCGAGGCGGAAAAATATGAGA
AATCTCTCTACAAGGGCCCCAAAGCCGGAAATAAAGGCGGTAAAGGAAAG
AAGCGAAACCCTCAAGAAGAATGGATGGAAATGATTGCCTCTGTGGCTTG
TGATAACAGTGAGACTGGAGGTGTGAACTCTATCCTTCGCCGGCATTTAT
CCCGAATGGCTGAGTTGGGTAACGTCCCCCGCAACGAGAAAAAATTCAAG
AACTTCTTGAACAACAGTTTAAGGGTACGTATTGAGATTGTGCCTTTGCA
TTAGGAGGTGGCGATCATTGTTCGTCTGTATGCGTACTTTGTGGAAGACA
GTtgcaaaggaaggagaagcttTAGCATCAGCTCTTTCACCTTCTCGTGG
CATATTTTTGTCAACTCCACAGATAAATCGCTCAAATGAGCAAGATGAGC
TTTGGAAGTACttgaaggggaaaatggatgAAAACAAGCCTGCCGCAGAG
GCACCCTCGGGTCAGGTAATGGCGGacaaggcagaggagggaaagaagga
gggcacaACCCGGACGATGAGGGCGGCCTCTAAACCTGAGGACGATGGGC
AAGTATCCAGTCCATCGACTGACAAGATAGAAAAAGGATTTGAAAAAGGC
GAAAAGAagcggaaaaaaaaaaggacgaaaaaaaggagacAGGCAGAGCG
GAGCAGGAGCCTGCCACCCCGCAGCATGAGCACAAGAAGCGAAAGAAAGA
TAAGGCTGAGGCGGCAGCGAGCGTAACAAATGGAGCGAGacagaaagaga
agaatgaGTGTCCAAATATGTCCACAAGCGCAGTGGGGTGCACTTTCGCA
TGGGGAAAAGTAATCAAGAAAGTAGTCAAGAAAGccccgggaaggaggat
tgaTCGACATCTTCTTCGGGGCCAAGTCCTTACCATAGCGGCAGAACAAG
TGGTGGGAGacaaaaaggaaatgaaaaaaGCCTTCAAAGAAGTGTTAGGC
GGGGGCATTCCGGGTTTACAAGTCAATGGAAACGAAGTCATGTACATTAA
ACAGCAATGATATTGGCGGTTAGGGAACATTGCGTCAAAAGCACCAAACA
CAGAGACTGAGGTACATTATTCCATCGAAATTTGAACCTTACAACAAGAT
AACAATATTTATTG

Coding sequence (CDS) from alignment at CM002467.1:240054..241467+

>rna5968 ID=rna5968|Name=rna5968|organism=Nannochloropsis gaditana|type=CDS|length=1518bp|location=Sequence derived from alignment at CM002467.1:240054..241467+ (Nannochloropsis gaditana)
ATGGTTTTCTTCTCCTGTGAAGGCTGCAACGAGACTCTTAAGAAGGCACA
GGTAGAGAGCCATCTGCGTCGTGCACTGTGCTCCCGTTACCCAGTATCGT
GTGTCGACTGCAGCCAGGTTTTTCCAGGGTCGTCCTACCAGGCACATACC
TCATGCATTTCCGAGGCGGAAAAATATGAGAAATCTCTCTACAAGGGCCC
CAAAGCCGGAAATAAAGGCGGTAAAGGAAAGAAGCGAAACCCTCAAGAAG
AATGGATGGAAATGATTGCCTCTGTGGCTTGTGATAACAGTGAGACTGGA
GGTGTGAACTCTATCCTTCGCCGGCATTTATCCCGAATGGCTGAGTTGGG
TAACGTCCCCCGCAACGAGAAAAAATTCAAGAACTTCTTGAACAACAGTT
TAAGGATAAATCGCTCAAATGAGCAAGATGAGCTTTGGAAGTACttgaag
gggaaaatggatgAAAACAAGCCTGCCGCAGAGGCACCCTCGGGTCAGGT
AATGGCGGacaaggcagaggagggaaagaaggagggcacaACCCGGACGA
TGAGGGCGGCCTCTAAACCTGAGGACGATGGGCAAGTATCCAGTCCATCG
ACTGACAAGATAGAAAAAGGATTTGAAAAAGGCGAAAAGAagcggaaaaa
aaaaaggacgaaaaaaaggagacAGGCAGAGCGGAGCAGGAGCCTGCCAC
CCCGCAGCATGAGCACAAGAAGCGAAAGAAAGATAAGGCTGAGGCGGCAG
CGAGCGTAAATGGTTTTCTTCTCCTGTGAAGGCTGCAACGAGACTCTTAA
GAAGGCACAGGTAGAGAGCCATCTGCGTCGTGCACTGTGCTCCCGTTACC
CAGTATCGTGTGTCGACTGCAGCCAGGTTTTTCCAGGGTCGTCCTACCAG
GCACATACCTCATGCATTTCCGAGGCGGAAAAATATGAGAAATCTCTCTA
CAAGGGCCCCAAAGCCGGAAATAAAGGCGGTAAAGGAAAGAAGCGAAACC
CTCAAGAAGAATGGATGGAAATGATTGCCTCTGTGGCTTGTGATAACAGT
GAGACTGGAGGTGTGAACTCTATCCTTCGCCGGCATTTATCCCGAATGGC
TGAGTTGGGTAACGTCCCCCGCAACGAGAAAAAATTCAAGAACTTCTTGA
ACAACAGTTTAAGGATAAATCGCTCAAATGAGCAAGATGAGCTTTGGAAG
TACttgaaggggaaaatggatgAAAACAAGCCTGCCGCAGAGGCACCCTC
GGGTCAGGTAATGGCGGacaaggcagaggagggaaagaaggagggcacaA
CCCGGACGATGAGGGCGGCCTCTAAACCTGAGGACGATGGGCAAGTATCC
AGTCCATCGACTGACAAGATAGAAAAAGGATTTGAAAAAGGCGAAAAGAa
gcggaaaaaaaaaaggacgaaaaaaaggagacAGGCAGAGCGGAGCAGGA
GCCTGCCACCCCGCAGCATGAGCACAAGAAGCGAAAGAAAGATAAGGCTG
AGGCGGCAGCGAGCGTAA

Synonyms

Publications