EWM24724.1, cds5953 (CDS) Nannochloropsis gaditana

Overview
NameEWM24724.1
Unique Namecds5953
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:240173..240577 +
Alignment locationCM002467.1:240726..241079 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24724.1
ProductZinc finger, C2H2, LYAR-type
Orig transcript idgnl|cribi|Naga_100180g9.4037.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:240173..240577 +
CM002467.1supercontigCM002467.1:240726..241079 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR014898Znf_C2H2_LYAR
Homology
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|585106259|gb|EWM24724.1| (Zinc finger, C2H2, LYAR-type [Nannochloropsis gaditana])

HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAAEAPSGQVMADKAEEGKKEGTTRTMRAASKPEDDGQVSSPSTDKIEKGFEKGEKKRKKKRTKKRRQAERSRSLPPRSMSTRSERKIRLRRQRA 252
            MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAAEAPSGQVMADKAEEGKKEGTTRTMRAASKPEDDGQVSSPSTDKIEKGFEKGEKKRKKKRTKKRRQAERSRSLPPRSMSTRSERKIRLRRQRA
Sbjct:    1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAAEAPSGQVMADKAEEGKKEGTTRTMRAASKPEDDGQVSSPSTDKIEKGFEKGEKKRKKKRTKKRRQAERSRSLPPRSMSTRSERKIRLRRQRA 252          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|695425868|ref|XP_009529279.1| (hypothetical protein PHYSODRAFT_346613 [Phytophthora sojae] >gi|348675712|gb|EGZ15530.1| hypothetical protein PHYSODRAFT_346613 [Phytophthora sojae])

HSP 1 Score: 149.443 bits (376), Expect = 1.367e-40
Identity = 84/170 (49.41%), Postives = 104/170 (61.18%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKY----LKGKMDENK--PAAEAP 163
            MVFF CEGCNETLKK +V++H  R  C   + VSCVDCS VF G+ Y AHTSCISEAEKYEKSLY+G K  NKG  GKK+ PQE WM+ + S  C +         L+  L+R+A   NVPR + KF NF++NSL +  +   +  W       K    E+   PAA AP
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLYQGDK--NKGKPGKKQTPQERWMDAVQSATCPDDRK------LQDVLTRIAGYDNVPRKKNKFVNFVSNSLALRDAALVERAWTIYETAFKASAPESNETPAAAAP 160          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|673030876|ref|XP_008869399.1| (hypothetical protein H310_06206 [Aphanomyces invadans] >gi|574474550|gb|ETW01551.1| hypothetical protein H310_06206 [Aphanomyces invadans])

HSP 1 Score: 149.058 bits (375), Expect = 3.339e-40
Identity = 81/186 (43.55%), Postives = 115/186 (61.83%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLK---GKMDENKPAAEAPSGQVMADKAEEGKKEGTTR 182
            MVFF CEGCNETLKK +V++H  R  C   + V+CVDC  VF G+ Y AHT+CISEA+KYE +LY+ PKA     K  K+NPQE WM++I S       +   ++ + + L R+A   NVPR + KF NFL NS+ I  +  +D+LW +L+    K+ + + AA+ P+    AD+ +  K + T R
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHASR--CRNCWAVTCVDCQVVFKGNDYAAHTTCISEAQKYEGALYQAPKA----SKQAKKNPQERWMDLIQS-------STAPDAKVNQALQRIAGYDNVPRKKPKFFNFLKNSIGI--TGVEDKLWTFLETEFNKLKDTEAAAKRPANDTTADEPQAKKAKTTGR 171          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|1173931602|gb|OQR83955.1| (hypothetical protein ACHHYP_14086 [Achlya hypogyna])

HSP 1 Score: 147.902 bits (372), Expect = 1.011e-39
Identity = 77/164 (46.95%), Postives = 103/164 (62.80%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLK---GKMDENKPAA 160
            MVFF CEGCNETLKK +V+ H  R  C   + V+CVDCS VF G+ Y AHT+CISEAEKYE +LY+    GNKG    K+NPQE WM++I SV+  +++       + + L R+    NVPR + KF NFL NS+    +  ++ LW +L+    K+ E  PAA
Sbjct:    1 MVFFVCEGCNETLKKNKVDQHAAR--CRNCWAVTCVDCSVVFKGNDYAAHTTCISEAEKYEGALYQ----GNKGKAAVKKNPQERWMDLIQSVSAPDTK-------VNQALQRIQSYDNVPRKKAKFMNFLKNSIGTQGAGLEERLWTFLETEFNKLKEPTPAA 151          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|1214709521|gb|OWZ20695.1| (hypothetical protein PHMEG_0004871 [Phytophthora megakarya])

HSP 1 Score: 145.591 bits (366), Expect = 3.937e-39
Identity = 78/165 (47.27%), Postives = 100/165 (60.61%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAAEAPS 164
            MVFF CEGCNETLKK +V++H  R  C   + VSCVDCS VF G+ Y  HTSCISEAEKYEKSL++G K  NK   GKK+ PQE WM+ + S  C   E   V  +    L+R+A   NVPR + KF NF+ NSL +  +   ++ W   +     + P  + PS
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAGHTSCISEAEKYEKSLFQGDK--NKSKTGKKQTPQERWMDAVQSATC--PEDRKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTTLVEKAWTIYETAFKASAPENDPPS 155          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|566030079|gb|ETI52990.1| (hypothetical protein F443_04007 [Phytophthora parasitica P1569] >gi|568025397|gb|ETL99412.1| hypothetical protein L917_03749 [Phytophthora parasitica] >gi|568055824|gb|ETM52563.1| hypothetical protein L914_03857 [Phytophthora parasitica])

HSP 1 Score: 145.591 bits (366), Expect = 4.110e-39
Identity = 78/161 (48.45%), Postives = 100/161 (62.11%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAA 160
            MVFF CEGCNETLKK +V++H  R  C   + VSCVDCS VF G+ Y AHTSCISEAEKYEKSL++G K  NK   GKK+ PQE WM+++ S  C   E   V  +    L+R+A   NVPR + KF NF+ NSL +  +   ++ W   +     + P A
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWMDVVQSATC--PEDRKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEA 151          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|298712801|emb|CBJ48766.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 147.902 bits (372), Expect = 1.549e-38
Identity = 75/152 (49.34%), Postives = 97/152 (63.82%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALC-SRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKG 151
            MV+F CE CNETLKKAQV+ HL    C S + V+CVDC+  F G S++AHTSC+SE +KY+ +L+K PKA     K K R   E W + +  +A  N+ +G     L  HL RM +LGNVPR EKKFKNF+ NSLR+       +LW Y+ G
Sbjct:   61 MVYFVCESCNETLKKAQVDRHLYS--CKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKA-----KQKNRGVNEIWADSVL-LAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDG 204          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|675184649|ref|XP_008901209.1| (hypothetical protein PPTG_08058 [Phytophthora parasitica INRA-310] >gi|567996139|gb|ETL46261.1| hypothetical protein L916_03837 [Phytophthora parasitica] >gi|568098405|gb|ETN13132.1| hypothetical protein PPTG_08058 [Phytophthora parasitica INRA-310] >gi|570957809|gb|ETP22788.1| hypothetical protein F441_03992 [Phytophthora parasitica CJ01A1] >gi|570993424|gb|ETP50780.1| hypothetical protein F442_03994 [Phytophthora parasitica P10297] >gi|970616545|gb|KUF64708.1| Cell growth-regulating nucleolar protein [Phytophthora nicotianae] >gi|970657637|gb|KUF95495.1| hypothetical protein AM588_10005475 [Phytophthora nicotianae])

HSP 1 Score: 143.665 bits (361), Expect = 1.947e-38
Identity = 77/161 (47.83%), Postives = 100/161 (62.11%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAA 160
            MVFF CEGCNETLKK +V++H  R  C   + VSCVDCS VF G+ Y AHTSCISEAEKYEKSL++G K  NK   GKK+ PQE W++++ S  C   E   V  +    L+R+A   NVPR + KF NF+ NSL +  +   ++ W   +     + P A
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQSATC--PEDRKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEA 151          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|567967679|gb|ETK92849.1| (hypothetical protein L915_03896 [Phytophthora parasitica] >gi|570333738|gb|ETO81686.1| hypothetical protein F444_04066 [Phytophthora parasitica P1976])

HSP 1 Score: 143.665 bits (361), Expect = 2.054e-38
Identity = 77/161 (47.83%), Postives = 100/161 (62.11%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAA 160
            MVFF CEGCNETLKK +V++H  R  C   + VSCVDCS VF G+ Y AHTSCISEAEKYEKSL++G K  NK   GKK+ PQE W++++ S  C   E   V  +    L+R+A   NVPR + KF NF+ NSL +  +   ++ W   +     + P A
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQSATC--PEDRKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEA 151          
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|301123105|ref|XP_002909279.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100041|gb|EEY58093.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 142.895 bits (359), Expect = 3.784e-38
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELW 146
            MVFF CEGCNETLKK +V++H  R   + + VSCVDCS VF G+ Y AHTSCISEAEKYEKSL++G K  NK   GKK+ PQE W++++ +  C   E   V  +    L+R+A   NVPR + KF NF+ NSL +  +   ++ W
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCR-NCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQTATC--PEDCKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTTLVEKAW 137          
The following BLAST results are available for this feature:
BLAST of EWM24724.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106259|gb|EWM24724.1|0.000e+0100.00Zinc finger, C2H2, LYAR-type [Nannochloropsis gadi... [more]
gi|695425868|ref|XP_009529279.1|1.367e-4049.41hypothetical protein PHYSODRAFT_346613 [Phytophtho... [more]
gi|673030876|ref|XP_008869399.1|3.339e-4043.55hypothetical protein H310_06206 [Aphanomyces invad... [more]
gi|1173931602|gb|OQR83955.1|1.011e-3946.95hypothetical protein ACHHYP_14086 [Achlya hypogyna... [more]
gi|1214709521|gb|OWZ20695.1|3.937e-3947.27hypothetical protein PHMEG_0004871 [Phytophthora m... [more]
gi|566030079|gb|ETI52990.1|4.110e-3948.45hypothetical protein F443_04007 [Phytophthora para... [more]
gi|298712801|emb|CBJ48766.1|1.549e-3849.34conserved unknown protein [Ectocarpus siliculosus][more]
gi|675184649|ref|XP_008901209.1|1.947e-3847.83hypothetical protein PPTG_08058 [Phytophthora para... [more]
gi|567967679|gb|ETK92849.1|2.054e-3847.83hypothetical protein L915_03896 [Phytophthora para... [more]
gi|301123105|ref|XP_002909279.1|3.784e-3850.00conserved hypothetical protein [Phytophthora infes... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5968rna5968Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications