EWM24724.1, cds5953 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|585106259|gb|EWM24724.1| (Zinc finger, C2H2, LYAR-type [Nannochloropsis gaditana]) HSP 1 Score: 519.235 bits (1336), Expect = 0.000e+0 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAAEAPSGQVMADKAEEGKKEGTTRTMRAASKPEDDGQVSSPSTDKIEKGFEKGEKKRKKKRTKKRRQAERSRSLPPRSMSTRSERKIRLRRQRA 252 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAAEAPSGQVMADKAEEGKKEGTTRTMRAASKPEDDGQVSSPSTDKIEKGFEKGEKKRKKKRTKKRRQAERSRSLPPRSMSTRSERKIRLRRQRA Sbjct: 1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAAEAPSGQVMADKAEEGKKEGTTRTMRAASKPEDDGQVSSPSTDKIEKGFEKGEKKRKKKRTKKRRQAERSRSLPPRSMSTRSERKIRLRRQRA 252
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|695425868|ref|XP_009529279.1| (hypothetical protein PHYSODRAFT_346613 [Phytophthora sojae] >gi|348675712|gb|EGZ15530.1| hypothetical protein PHYSODRAFT_346613 [Phytophthora sojae]) HSP 1 Score: 149.443 bits (376), Expect = 1.367e-40 Identity = 84/170 (49.41%), Postives = 104/170 (61.18%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKY----LKGKMDENK--PAAEAP 163 MVFF CEGCNETLKK +V++H R C + VSCVDCS VF G+ Y AHTSCISEAEKYEKSLY+G K NKG GKK+ PQE WM+ + S C + L+ L+R+A NVPR + KF NF++NSL + + + W K E+ PAA AP Sbjct: 1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLYQGDK--NKGKPGKKQTPQERWMDAVQSATCPDDRK------LQDVLTRIAGYDNVPRKKNKFVNFVSNSLALRDAALVERAWTIYETAFKASAPESNETPAAAAP 160
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|673030876|ref|XP_008869399.1| (hypothetical protein H310_06206 [Aphanomyces invadans] >gi|574474550|gb|ETW01551.1| hypothetical protein H310_06206 [Aphanomyces invadans]) HSP 1 Score: 149.058 bits (375), Expect = 3.339e-40 Identity = 81/186 (43.55%), Postives = 115/186 (61.83%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLK---GKMDENKPAAEAPSGQVMADKAEEGKKEGTTR 182 MVFF CEGCNETLKK +V++H R C + V+CVDC VF G+ Y AHT+CISEA+KYE +LY+ PKA K K+NPQE WM++I S + ++ + + L R+A NVPR + KF NFL NS+ I + +D+LW +L+ K+ + + AA+ P+ AD+ + K + T R Sbjct: 1 MVFFVCEGCNETLKKNKVDAHASR--CRNCWAVTCVDCQVVFKGNDYAAHTTCISEAQKYEGALYQAPKA----SKQAKKNPQERWMDLIQS-------STAPDAKVNQALQRIAGYDNVPRKKPKFFNFLKNSIGI--TGVEDKLWTFLETEFNKLKDTEAAAKRPANDTTADEPQAKKAKTTGR 171
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|1173931602|gb|OQR83955.1| (hypothetical protein ACHHYP_14086 [Achlya hypogyna]) HSP 1 Score: 147.902 bits (372), Expect = 1.011e-39 Identity = 77/164 (46.95%), Postives = 103/164 (62.80%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLK---GKMDENKPAA 160 MVFF CEGCNETLKK +V+ H R C + V+CVDCS VF G+ Y AHT+CISEAEKYE +LY+ GNKG K+NPQE WM++I SV+ +++ + + L R+ NVPR + KF NFL NS+ + ++ LW +L+ K+ E PAA Sbjct: 1 MVFFVCEGCNETLKKNKVDQHAAR--CRNCWAVTCVDCSVVFKGNDYAAHTTCISEAEKYEGALYQ----GNKGKAAVKKNPQERWMDLIQSVSAPDTK-------VNQALQRIQSYDNVPRKKAKFMNFLKNSIGTQGAGLEERLWTFLETEFNKLKEPTPAA 151
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|1214709521|gb|OWZ20695.1| (hypothetical protein PHMEG_0004871 [Phytophthora megakarya]) HSP 1 Score: 145.591 bits (366), Expect = 3.937e-39 Identity = 78/165 (47.27%), Postives = 100/165 (60.61%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAAEAPS 164 MVFF CEGCNETLKK +V++H R C + VSCVDCS VF G+ Y HTSCISEAEKYEKSL++G K NK GKK+ PQE WM+ + S C E V + L+R+A NVPR + KF NF+ NSL + + ++ W + + P + PS Sbjct: 1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAGHTSCISEAEKYEKSLFQGDK--NKSKTGKKQTPQERWMDAVQSATC--PEDRKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTTLVEKAWTIYETAFKASAPENDPPS 155
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|566030079|gb|ETI52990.1| (hypothetical protein F443_04007 [Phytophthora parasitica P1569] >gi|568025397|gb|ETL99412.1| hypothetical protein L917_03749 [Phytophthora parasitica] >gi|568055824|gb|ETM52563.1| hypothetical protein L914_03857 [Phytophthora parasitica]) HSP 1 Score: 145.591 bits (366), Expect = 4.110e-39 Identity = 78/161 (48.45%), Postives = 100/161 (62.11%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAA 160 MVFF CEGCNETLKK +V++H R C + VSCVDCS VF G+ Y AHTSCISEAEKYEKSL++G K NK GKK+ PQE WM+++ S C E V + L+R+A NVPR + KF NF+ NSL + + ++ W + + P A Sbjct: 1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWMDVVQSATC--PEDRKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEA 151
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|298712801|emb|CBJ48766.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 147.902 bits (372), Expect = 1.549e-38 Identity = 75/152 (49.34%), Postives = 97/152 (63.82%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALC-SRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKG 151 MV+F CE CNETLKKAQV+ HL C S + V+CVDC+ F G S++AHTSC+SE +KY+ +L+K PKA K K R E W + + +A N+ +G L HL RM +LGNVPR EKKFKNF+ NSLR+ +LW Y+ G Sbjct: 61 MVYFVCESCNETLKKAQVDRHLYS--CKSCWGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKA-----KQKNRGVNEIWADSVL-LAASNASSGVAPKPLCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDG 204
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|675184649|ref|XP_008901209.1| (hypothetical protein PPTG_08058 [Phytophthora parasitica INRA-310] >gi|567996139|gb|ETL46261.1| hypothetical protein L916_03837 [Phytophthora parasitica] >gi|568098405|gb|ETN13132.1| hypothetical protein PPTG_08058 [Phytophthora parasitica INRA-310] >gi|570957809|gb|ETP22788.1| hypothetical protein F441_03992 [Phytophthora parasitica CJ01A1] >gi|570993424|gb|ETP50780.1| hypothetical protein F442_03994 [Phytophthora parasitica P10297] >gi|970616545|gb|KUF64708.1| Cell growth-regulating nucleolar protein [Phytophthora nicotianae] >gi|970657637|gb|KUF95495.1| hypothetical protein AM588_10005475 [Phytophthora nicotianae]) HSP 1 Score: 143.665 bits (361), Expect = 1.947e-38 Identity = 77/161 (47.83%), Postives = 100/161 (62.11%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAA 160 MVFF CEGCNETLKK +V++H R C + VSCVDCS VF G+ Y AHTSCISEAEKYEKSL++G K NK GKK+ PQE W++++ S C E V + L+R+A NVPR + KF NF+ NSL + + ++ W + + P A Sbjct: 1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQSATC--PEDRKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEA 151
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|567967679|gb|ETK92849.1| (hypothetical protein L915_03896 [Phytophthora parasitica] >gi|570333738|gb|ETO81686.1| hypothetical protein F444_04066 [Phytophthora parasitica P1976]) HSP 1 Score: 143.665 bits (361), Expect = 2.054e-38 Identity = 77/161 (47.83%), Postives = 100/161 (62.11%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSR-YPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPAA 160 MVFF CEGCNETLKK +V++H R C + VSCVDCS VF G+ Y AHTSCISEAEKYEKSL++G K NK GKK+ PQE W++++ S C E V + L+R+A NVPR + KF NF+ NSL + + ++ W + + P A Sbjct: 1 MVFFVCEGCNETLKKNKVDAHAGR--CRNCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQSATC--PEDRKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEA 151
BLAST of EWM24724.1 vs. NCBI_GenBank
Match: gi|301123105|ref|XP_002909279.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100041|gb|EEY58093.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 142.895 bits (359), Expect = 3.784e-38 Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 0 Query: 1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELW 146 MVFF CEGCNETLKK +V++H R + + VSCVDCS VF G+ Y AHTSCISEAEKYEKSL++G K NK GKK+ PQE W++++ + C E V + L+R+A NVPR + KF NF+ NSL + + ++ W Sbjct: 1 MVFFVCEGCNETLKKNKVDAHAGRCR-NCWAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQTATC--PEDCKVQDV----LTRIAGYDNVPRKKNKFVNFVTNSLALRDTTLVEKAW 137 The following BLAST results are available for this feature:
BLAST of EWM24724.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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