EWM24734.1, cds5936 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24734.1
Unique Name	cds5936
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002467.1:191117..191154 -
Alignment location	CM002467.1:190672..190870 -
Alignment location	CM002467.1:190453..190528 -
Alignment location	CM002467.1:190285..190340 -
Alignment location	CM002467.1:189964..190155 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24734.1
Product	Lipid-binding START
Orig transcript id	gnl\|cribi\|Naga_100272g4.10152.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:191117..191154 -
CM002467.1	supercontig	CM002467.1:190672..190870 -
CM002467.1	supercontig	CM002467.1:190453..190528 -
CM002467.1	supercontig	CM002467.1:190285..190340 -
CM002467.1	supercontig	CM002467.1:189964..190155 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002913	START_lipid-bd_dom
IPR023393	START-like_dom

Homology

[Close]

BLAST of EWM24734.1 vs. NCBI_GenBank
Match: gi|585106272|gb|EWM24734.1| (Lipid-binding START [Nannochloropsis gaditana])

HSP 1 Score: 377.481 bits (968), Expect = 1.842e-132
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0

Query:    1 MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEATEDAEALVRRRASLREKDHTHPLLVDSVTASREDLLALKKLLQTKLEEAKRDEKKLNLSLAELKSKIQNDLKKVEARLRAGGK 186
            MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEATEDAEALVRRRASLREKDHTHPLLVDSVTASREDLLALKKLLQTKLEEAKRDEKKLNLSLAELKSKIQNDLKKVEARLRAGGK
Sbjct:    1 MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEATEDAEALVRRRASLREKDHTHPLLVDSVTASREDLLALKKLLQTKLEEAKRDEKKLNLSLAELKSKIQNDLKKVEARLRAGGK 186

[Close]

BLAST of EWM24734.1 vs. NCBI_GenBank
Match: gi|553180694|ref|XP_005853446.1| (hypothetical protein NGA_0179202 [Nannochloropsis gaditana CCMP526] >gi|422295613|gb|EKU22912.1| hypothetical protein NGA_0179202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 222.246 bits (565), Expect = 5.889e-69
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query:    1 MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEAT 104
            MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEAT
Sbjct:  219 MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEAT 322

[Close]

BLAST of EWM24734.1 vs. NCBI_GenBank
Match: gi|299473186|emb|CBN78762.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.398 bits (298), Expect = 7.125e-30
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 0

Query:    1 MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEATEDA 107
            MISSRDF +VSHK P   +G   G+  FVQ NAAN +P N+ + RG++NS++LL PVD  TTR  Y  E++ KGWLP   V+AAAD++P  L V++ H+E E +++A
Sbjct:  136 MISSRDFCYVSHKAPLELVGAKPGSTLFVQANAANEVPPNNASTRGDVNSVLLLVPVDPITTRAYYAIEMDVKGWLPVKVVKAAADEIPLTLAVLRDHIEKELSDEA 242

The following BLAST results are available for this feature:

BLAST of EWM24734.1 vs. NCBI_GenBank

BLAST of EWM24734.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|585106272\|gb\|EWM24734.1\|	1.842e-132	100.00	Lipid-binding START [Nannochloropsis gaditana]	[more]
gi\|553180694\|ref\|XP_005853446.1\|	5.889e-69	100.00	hypothetical protein NGA_0179202 [Nannochloropsis ...	[more]
gi\|299473186\|emb\|CBN78762.1\|	7.125e-30	50.47	expressed unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5951	rna5951	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications