rna5951, rna5951 (mRNA) Nannochloropsis gaditana

Overview
Namerna5951
Unique Namerna5951
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length778
Alignment locationCM002467.1:189964..191154 -

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Properties
Property NameValue
ProductLipid-binding START
Orig transcript idgnl|cribi|Naga_100272g4.10152.mrna
Orig protein idgnl|cribi|Naga_100272g4.10152
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:189964..191154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100272g4gene5749Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5951rna5951-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24734.1cds5936Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5951 ID=rna5951|Name=rna5951|organism=Nannochloropsis gaditana|type=mRNA|length=778bp
TGTCACAGATAAAAGCTGGCCGTTGGCGCCGATGCTAGCAAAGGGCTCCA
CAACGCTTTACATAGTAAGCTTTTTGGCAATCCTCCTCTGTCCTCACGCC
TTTTTTCGATCGACATTACATGCTACAAGAAATTCGCATCTCCCTGTGAC
AAGATCATTTACGATTATGGCATCTTCCAAAGCCTCCACATCCGATGTCA
CGGTATCTAGTGTCGAGGGCATGCAGCAATTGCTCTTCGTGCAGATGGGC
TTTGGGTGCGATCAACATGGGCAAGACGCCACCAAAGCGGCCGTCAAGGC
CTGTCGCAACGCGATCGAGTGGAATTCGCTTCCGTCGATAAACCAGATCG
TCCCAGGAGGGTACGATGCCATGAAAGTGCGTGTGCAGATAGCCGTGCCA
GTGGATGCGTCAAACATCGACACAGAAGCCATCAAAAAAGCATTTCCATA
CGGTCAGCTCTTACCCGTAGAGATCCAAAGCGGGGGAATGCGTGCGTCGA
GTGGCATCGCCTTGCCGGCCATGGGCGACCGGAATGACGATTGGATCGTG
GCGATTGCCGCAGTGTCCGTAGGATGGTGAGAGTTGACTAGTACGGCGTC
CTCCTGAGGAAGGCCAGTAAGGCACTTTTTGGAGGGTCATTGGGAGGTCC
GACAAGACCGAGGGAGAGAAGGGAGGTGCAGTCACAGGGGATGCTGTCAA
AGAAGGCAAGCACGGTGGATGTGAAGTAACAACTACATAATACGACCCTG
TCGATGGACCGGATCGACGTTTTCTGAT
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protein sequence of rna5951

>rna5951-protein ID=rna5951-protein|Name=rna5951|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINS
IILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLE
SEATEDAEALVRRRASLREKDHTHPLLVDSVTASREDLLALKKLLQTKLE
EAKRDEKKLNLSLAELKSKIQNDLKKVEARLRAGGK
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mRNA from alignment at CM002467.1:189964..191154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5951 ID=rna5951|Name=rna5951|organism=Nannochloropsis gaditana|type=mRNA|length=1191bp|location=Sequence derived from alignment at CM002467.1:189964..191154- (Nannochloropsis gaditana)
ATGATCAGCTCCAGGGATTTTGTCTTCGTCAGTCACAAGTGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGGAGGAGAAAAAGATCGTGTAGCTCTCCCTCG
TGGGTTGCTGCTGTTATTTCATCTGCAAGAGCCGCAATAAGCATATCTCG
AAAGCGTGATTCGTAGCCTAGATTTGTGGAAACTGTTGAGGACTCATCTG
CATATCCTCTTACAACGCCTTTTTTCCCTCCTCTTCTCCCTCTCCCTCCG
TCCGACCCTCCACTTTCCTCCCTCCGTTTGTCAGAGTGCCTGCCGGCGAC
TTGGGTGGCTCTTTCGGAGCCCAAGCATTTGTGCAGACCAACGCAGCGAA
CACACTTCCTGAAAACAGCGGGGCCGTACGTGGGAATATCAACAGCATCA
TCCTCTTGGAACCCGTGGATGGGTACACCACACGTGTGCGCTACGTGTGC
GAGATCGAACCCAAAGGATGGCTGCCCACCATGGTAACGGAAAAAAGAGG
GAAATCAAAGGGCTGCCGGGCGTGGATGACCTGGGCGATGCTCGGATCTG
GGAGCGTGACGCATGCACTCACTCTACCGTCCACTTTTTAATCCTCACAC
ACACACGTTCCACGCCTGGTGCACAGGCGGTGGAAGCGGCGGCCGACGAC
TTACCCGGTGTTTTGGGCGTGATGAAGGCGCATCTTGAATCTGAAGCGAC
GGGTGGGAAGGAAGGGAGAAGGAGAGGGAGGGCAGATTCGCGCGTGTAGG
GGAGCCAGCCGTGCGCGTATCATCTGACGCATCTCGTTTTTGTCCCCTTT
CTTCACAAGCTTAGAGGATGCAGAGGCGCTGGTTCGGAGACGAGCAAGCC
TCCGGGAGAAAGATCACACGGTAGGACTCAATGATGGACTTGATTCTCGC
GCCCTCGGTCCTCATTTTTCTTGTTTCTTACTGGTTTCCTTCAGTCCTTT
TCTTTCAAAAAATCCTTAACCCCTGTTTTATCTGCGGCGTACGATTCAGC
ATCCCCTTCTAGTTGACAGCGTGACCGCCAGCAGAGAAGATCTTCTCGCC
TTGAAGAAACTGCTCCAGACAAAGCTAGAGGAAGCGAAACGCGATGAGAA
GAAATTAAATCTGAGCCTAGCGGAATTGAAAAGCAAGATACAGAACGATC
TTAAGAAGGTAGAGGCGAGGTTGAGGGCAGGTGGAAAGTGA
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Coding sequence (CDS) from alignment at CM002467.1:189964..191154-

>rna5951 ID=rna5951|Name=rna5951|organism=Nannochloropsis gaditana|type=CDS|length=2805bp|location=Sequence derived from alignment at CM002467.1:189964..191154- (Nannochloropsis gaditana)
CATCCCCTTCTAGTTGACAGCGTGACCGCCAGCAGAGAAGATCTTCTCGC
CTTGAAGAAACTGCTCCAGACAAAGCTAGAGGAAGCGAAACGCGATGAGA
AGAAATTAAATCTGAGCCTAGCGGAATTGAAAAGCAAGATACAGAACGAT
CTTAAGAAGGTAGAGGCGAGGTTGAGGGCAGGTGGAAAGTGAAGGATGCA
GAGGCGCTGGTTCGGAGACGAGCAAGCCTCCGGGAGAAAGATCACACGGC
GGTGGAAGCGGCGGCCGACGACTTACCCGGTGTTTTGGGCGTGATGAAGG
CGCATCTTGAATCTGAAGCGACGGAGTGCCTGCCGGCGACTTGGGTGGCT
CTTTCGGAGCCCAAGCATTTGTGCAGACCAACGCAGCGAACACACTTCCT
GAAAACAGCGGGGCCGTACGTGGGAATATCAACAGCATCATCCTCTTGGA
ACCCGTGGATGGGTACACCACACGTGTGCGCTACGTGTGCGAGATCGAAC
CCAAAGGATGGCTGCCCACCATGATGATCAGCTCCAGGGATTTTGTCTTC
GTCAGTCACAACATCCCCTTCTAGTTGACAGCGTGACCGCCAGCAGAGAA
GATCTTCTCGCCTTGAAGAAACTGCTCCAGACAAAGCTAGAGGAAGCGAA
ACGCGATGAGAAGAAATTAAATCTGAGCCTAGCGGAATTGAAAAGCAAGA
TACAGAACGATCTTAAGAAGGTAGAGGCGAGGTTGAGGGCAGGTGGAAAG
TGAAGGATGCAGAGGCGCTGGTTCGGAGACGAGCAAGCCTCCGGGAGAAA
GATCACACGGCGGTGGAAGCGGCGGCCGACGACTTACCCGGTGTTTTGGG
CGTGATGAAGGCGCATCTTGAATCTGAAGCGACGGAGTGCCTGCCGGCGA
CTTGGGTGGCTCTTTCGGAGCCCAAGCATTTGTGCAGACCAACGCAGCGA
ACACACTTCCTGAAAACAGCGGGGCCGTACGTGGGAATATCAACAGCATC
ATCCTCTTGGAACCCGTGGATGGGTACACCACACGTGTGCGCTACGTGTG
CGAGATCGAACCCAAAGGATGGCTGCCCACCATGATGATCAGCTCCAGGG
ATTTTGTCTTCGTCAGTCACAACATCCCCTTCTAGTTGACAGCGTGACCG
CCAGCAGAGAAGATCTTCTCGCCTTGAAGAAACTGCTCCAGACAAAGCTA
GAGGAAGCGAAACGCGATGAGAAGAAATTAAATCTGAGCCTAGCGGAATT
GAAAAGCAAGATACAGAACGATCTTAAGAAGGTAGAGGCGAGGTTGAGGG
CAGGTGGAAAGTGAAGGATGCAGAGGCGCTGGTTCGGAGACGAGCAAGCC
TCCGGGAGAAAGATCACACGGCGGTGGAAGCGGCGGCCGACGACTTACCC
GGTGTTTTGGGCGTGATGAAGGCGCATCTTGAATCTGAAGCGACGGAGTG
CCTGCCGGCGACTTGGGTGGCTCTTTCGGAGCCCAAGCATTTGTGCAGAC
CAACGCAGCGAACACACTTCCTGAAAACAGCGGGGCCGTACGTGGGAATA
TCAACAGCATCATCCTCTTGGAACCCGTGGATGGGTACACCACACGTGTG
CGCTACGTGTGCGAGATCGAACCCAAAGGATGGCTGCCCACCATGATGAT
CAGCTCCAGGGATTTTGTCTTCGTCAGTCACAACATCCCCTTCTAGTTGA
CAGCGTGACCGCCAGCAGAGAAGATCTTCTCGCCTTGAAGAAACTGCTCC
AGACAAAGCTAGAGGAAGCGAAACGCGATGAGAAGAAATTAAATCTGAGC
CTAGCGGAATTGAAAAGCAAGATACAGAACGATCTTAAGAAGGTAGAGGC
GAGGTTGAGGGCAGGTGGAAAGTGAAGGATGCAGAGGCGCTGGTTCGGAG
ACGAGCAAGCCTCCGGGAGAAAGATCACACGGCGGTGGAAGCGGCGGCCG
ACGACTTACCCGGTGTTTTGGGCGTGATGAAGGCGCATCTTGAATCTGAA
GCGACGGAGTGCCTGCCGGCGACTTGGGTGGCTCTTTCGGAGCCCAAGCA
TTTGTGCAGACCAACGCAGCGAACACACTTCCTGAAAACAGCGGGGCCGT
ACGTGGGAATATCAACAGCATCATCCTCTTGGAACCCGTGGATGGGTACA
CCACACGTGTGCGCTACGTGTGCGAGATCGAACCCAAAGGATGGCTGCCC
ACCATGATGATCAGCTCCAGGGATTTTGTCTTCGTCAGTCACAACATCCC
CTTCTAGTTGACAGCGTGACCGCCAGCAGAGAAGATCTTCTCGCCTTGAA
GAAACTGCTCCAGACAAAGCTAGAGGAAGCGAAACGCGATGAGAAGAAAT
TAAATCTGAGCCTAGCGGAATTGAAAAGCAAGATACAGAACGATCTTAAG
AAGGTAGAGGCGAGGTTGAGGGCAGGTGGAAAGTGAAGGATGCAGAGGCG
CTGGTTCGGAGACGAGCAAGCCTCCGGGAGAAAGATCACACGGCGGTGGA
AGCGGCGGCCGACGACTTACCCGGTGTTTTGGGCGTGATGAAGGCGCATC
TTGAATCTGAAGCGACGGAGTGCCTGCCGGCGACTTGGGTGGCTCTTTCG
GAGCCCAAGCATTTGTGCAGACCAACGCAGCGAACACACTTCCTGAAAAC
AGCGGGGCCGTACGTGGGAATATCAACAGCATCATCCTCTTGGAACCCGT
GGATGGGTACACCACACGTGTGCGCTACGTGTGCGAGATCGAACCCAAAG
GATGGCTGCCCACCATGATGATCAGCTCCAGGGATTTTGTCTTCGTCAGT
CACAA
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Synonyms
Publications