EWM24737.1, cds5934 (CDS) Nannochloropsis gaditana

Overview
NameEWM24737.1
Unique Namecds5934
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:185339..185632 +
Alignment locationCM002467.1:185816..186811 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24737.1
Productl-serine ammonia-lyase
Orig transcript idgnl|cribi|Naga_100272g2.10155.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:185339..185632 +
CM002467.1supercontigCM002467.1:185816..186811 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0006520cellular amino acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0030170pyridoxal phosphate binding
Vocabulary: INTERPRO
TermDefinition
IPR000634Ser/Thr_deHydtase_PyrdxlP-BS
IPR001926TrpB-like_PLP-dep
Homology
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|585106275|gb|EWM24737.1| (l-serine ammonia-lyase [Nannochloropsis gaditana])

HSP 1 Score: 849.351 bits (2193), Expect = 0.000e+0
Identity = 429/429 (100.00%), Postives = 429/429 (100.00%), Query Frame = 0
Query:    1 MVLCTGFLKMIGTASVALTGSTTGLSSRGLTTLSYVPPSASPTIMADITTNPSTSSTPAAPSPGIAATGTGARRSPGKEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEILVEMERGLGVGS 429
            MVLCTGFLKMIGTASVALTGSTTGLSSRGLTTLSYVPPSASPTIMADITTNPSTSSTPAAPSPGIAATGTGARRSPGKEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEILVEMERGLGVGS
Sbjct:    1 MVLCTGFLKMIGTASVALTGSTTGLSSRGLTTLSYVPPSASPTIMADITTNPSTSSTPAAPSPGIAATGTGARRSPGKEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEILVEMERGLGVGS 429          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|219114171|ref|XP_002176259.1| (l-serine ammonia-lyase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402769|gb|EEC42753.1| l-serine ammonia-lyase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 284.648 bits (727), Expect = 9.264e-90
Identity = 166/341 (48.68%), Postives = 220/341 (64.52%), Query Frame = 0
Query:   78 KEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEIL 418
            ++ +  K+PLI S P+S +     +Y+KLDALQ SGSFKDRGM  LCSTLQ QG R+++SSSGGNAGL+ A  G+ LG+ V VIVP+TTKP+++EK+++ GA+V V G+NWN AD+ AR  V E          AY+ PYD+PLLW GHSTLVDE+++      +E    AI+ SVGGG    G+  G+     R G     V+  ET+GAASF      G++VRL  I ++ATSLGALEV P  L+ ++    AGGR           L  + TDAEAV AC  F +DHR+LVEPACGAALA+ Y+ RLR   +  S    G P+V+ VCGGSG++ ++L
Sbjct:   19 QQQLFHKTPLIKSIPISKIV-GKDVYIKLDALQASGSFKDRGMGHLCSTLQAQGVRKVISSSGGNAGLAVATVGQKLGIEVSVIVPTTTKPMVIEKLQSLGAQVTVHGENWNAADSLARQKVAESSMN-----TAYVSPYDNPLLWTGHSTLVDEVLD-----QLERNLGAIIVSVGGG----GLLCGILEGLARRGCPPTTVIAAETQGAASFGKARQQGKIVRLKAIDSIATSLGALEVAPAVLKLSKEHEDAGGR----------VLDALCTDAEAVDACLRFAQDHRILVEPACGAALAVAYTERLRN--ECLSQITDG-PIVLEVCGGSGVSVDLL 331          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|1210529904|dbj|GAX11437.1| (L-serine dehydratase [Fistulifera solaris])

HSP 1 Score: 271.166 bits (692), Expect = 1.380e-84
Identity = 172/339 (50.74%), Postives = 217/339 (64.01%), Query Frame = 0
Query:   84 KSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEILVEME 422
            ++PL+ S P+SSL     +YLK+D LQ SGSFKDRGMA LC  L+  G +RLVSSSGGNAGL+ A  G  LG+PV VIVP TTKP+++ K+++ GA V V G+NWN AD   R  V +       E  AYI PYD+PLLW GHSTLVDE+ E  +   +E  PAA++ SVGGGGLLCG  EG+     R GW+   VV  ETEGAASF      G + RL+ I ++ATSLGAL+VTP AL+ +        +D G     R       TDAEAV AC    +DHR+LVEPACGAALA +YS RLR    +W A     P+V+ VCGGSG+  ++L + +
Sbjct:   19 ETPLLRSVPLSSL-CGRDVYLKMDGLQASGSFKDRGMAHLCLELKETGVQRLVSSSGGNAGLAVATVGARLGIPVDVIVPQTTKPMVIAKLQSLGASVTVHGENWNAADEYTREKVTQ-----STEKTAYISPYDNPLLWTGHSTLVDEICE--QLHNVE--PAALIVSVGGGGLLCGALEGIQ----RNGWKSTTVVAAETEGAASFGKAWTEG-IERLSSIDSIATSLGALQVTPVALQRS--------KDHGSVTSIR------CTDAEAVDACWNMAQDHRILVEPACGAALATLYSERLR---NSWLANLPEGPIVVEVCGGSGVNMDLLTQWK 325          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|1072231398|gb|OEU16130.1| (tryptophan synthase beta subunit-like PLP-dependent enzyme [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 266.159 bits (679), Expect = 1.403e-82
Identity = 176/358 (49.16%), Postives = 221/358 (61.73%), Query Frame = 0
Query:   65 IAATGTGARRSPGKEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVE--GGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGL-AAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRK-RLKAWSAAKGGRPVVIVVCGGSGITPEIL 418
            + +    A  S G E +  ++PLI S P+++L    P+YLKLDALQ SGSFKDRGMA LC+T QR+GA  L+SSSGGNAGL+ A  G  LG+ V VIVP TTKPL+LEK+++ GAKV V GKNWNEAD  AR  V     +  P+   Y+ PYD+PLLW GHST+VDE+ +     +     +  AIV SVGGGGLLCG+ EG +R + R       V+  ET GA+ F     A G  + L  I ++ATSLGA   TP AL+ ARS       DGG         +   TD EA+ AC  F RDHR+LVEPACGAALA+ YS RLR   LK         P+V+ VCGGSG+  ++L
Sbjct:    1 MKSNNKDADLSEGAENLFSETPLIRSEPLTALV-GKPVYLKLDALQASGSFKDRGMAHLCATYQREGATELISSSGGNAGLAVATVGSRLGLGVSVIVPETTKPLVLEKLKSLGAKVTVHGKNWNEADTLARKRV-----DANPDDSKYVSPYDNPLLWTGHSTIVDEISDQLNIDDDDDNASIGAIVVSVGGGGLLCGVLEGCARRKLR-----TKVITSETNGASCFVQAYDAGGGPITLPGIDSIATSLGATSCTPVALDRARS------HDGG-------FAATACTDEEAIDACVRFARDHRMLVEPACGAALAVAYSKRLRDIHLKDVDG-----PIVLEVCGGSGVDLDLL 329          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|223999407|ref|XP_002289376.1| (serine/threonine deaminase, partial [Thalassiosira pseudonana CCMP1335] >gi|220974584|gb|EED92913.1| serine/threonine deaminase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 263.848 bits (673), Expect = 4.028e-81
Identity = 183/371 (49.33%), Postives = 227/371 (61.19%), Query Frame = 0
Query:   85 SPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTL---------QRQ------------GARRLVSSSGGNAGLSAALCGR-ILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVA----YIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSR--YEGRAGWEDV----GVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSG---GRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKG--GRPVVIVVCGGSGITPEIL 418
            +PLI+S P+S+L     +YLKLD LQPSGSFKDRGMA LC TL         Q+Q               +L+SSSGGNAGL+     R I  M V VIVP TTKPL++EK+R+ GA V V G NWN AD  AR +V+E   + G  A++    Y+ PYD+PLLW GHST+VDE++    +   +    AI+ASVGGGGLLCGI EGL R  + G +   +V     VV  ETEGAASFAA      +VRL  I +VATSLGALEVTP  +  +R     G+ GG   G+D      LS V TDAEAV AC  F   HR+LVEPACGAALA +YS RLR +L     +KG     +V+ VCGGSG+  ++L
Sbjct:    4 TPLIHSIPLSNLCAPHQVYLKLDLLQPSGSFKDRGMAHLCMTLKKVHTANRKQKQQLSPGGQDDGSGNTMKLISSSGGNAGLAVTTVARNIPDMEVSVIVPETTKPLVIEKLRSLGADVTVHGANWNLADDLARKLVKEHRDQDGDSALSGGAEYVSPYDNPLLWTGHSTVVDEIITQLIDTKHDVKVGAILASVGGGGLLCGILEGLERNYFGGSSVRSNVISGTKVVACETEGAASFAASKKGTTMVRLEGINSVATSLGALEVTPAVIHRSRRHQERGQIGG--SGED-----VLSYVCTDAEAVNACVQFSSHHRMLVEPACGAALAPLYSDRLRTKLLEELKSKGEESSAIVVEVCGGSGVNLDLL 367          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|397607588|gb|EJK59741.1| (hypothetical protein THAOC_20000 [Thalassiosira oceanica])

HSP 1 Score: 253.062 bits (645), Expect = 1.628e-76
Identity = 178/389 (45.76%), Postives = 226/389 (58.10%), Query Frame = 0
Query:   65 IAATGTGARRSPGKEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQR-------------------QGARRLVSSSGGNAGLSAALCGR-ILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARAR-WVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRY----EGRAGW-EDVGVVGVETEGAASFAAGLAAGEV-------VRLTEIQTVATSLGALEVTPRALEYA-RSGGRAGGRDG-GQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEIL 418
            ++++  G  +    + +   +PL+ S P+S L     +YLKLD LQ SGSFKDRGMA LC+T Q+                    G  +++SSSGGNAGL+     R I  M V V+VP TTK L+++K+R+ GA V V G NWN AD  AR WV E        E   Y+ PYD+PLLW GHST+VDE+++   E   +    AI+ASVGGGGLLCG+ EG+ R     E +A       VV  ETEGA+SFAA   A  V       VRL  I +VATSLGALEVTP  ++ A R   R   +DG G+D      LS V +DAEAV AC  F  DHR+LVEPACGAALA +YS RLR +L        G  +V+ VCGGSG+  E+L
Sbjct:   24 LSSSSGGVAKDARSQGLFQTTPLVESLPLSKLCAPHRVYLKLDLLQQSGSFKDRGMAHLCATTQKVYTANRQREADGVNGSSDADGRIKVISSSGGNAGLAVTTVARKIPQMDVSVVVPETTKQLVIDKLRSLGADVTVHGANWNSADELARRWVDE------AKEGAVYVSPYDNPLLWTGHSTIVDEVLDQLSETSNDAKVGAILASVGGGGLLCGVLEGIERNYFSDESKARMIRGSKVVACETEGASSFAASFNANPVGNNDLTMVRLESIDSVATSLGALEVTPAVVQRAHRHMERGREQDGHGED-----VLSYVCSDAEAVAACARFASDHRMLVEPACGAALAPIYSDRLRVQLLEELKGSVGSAIVVEVCGGSGVNLELL 401          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|671626445|ref|WP_031591475.1| (serine dehydratase [Pantoea agglomerans])

HSP 1 Score: 244.588 bits (623), Expect = 1.349e-74
Identity = 151/341 (44.28%), Postives = 205/341 (60.12%), Query Frame = 0
Query:   81 MRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEILVEM 421
            + + +PLI S P+S       ++LK+DALQPSGSFK RG+   C    ++GAR  +SSSGGNAGL+ A  GR+LG+PV V+VP TT    +E +R + A+V V G +W EA+  A  +  +          A+I P+D PLLW+GH+T++DE+V  G        P A+V SVGGGGL+CG+ EGL+R     G  +V V+ +ETEGAASF A   AG+ V +  I TVATSLGA  V  +A+EYA S               R  +S  VTDA AV+AC  F  DHR++ EPACGAALA VY    +  L A++       ++++VCGG+  T E L+ M
Sbjct:    3 LHINTPLINSRPLSQTA-GRNVWLKMDALQPSGSFKIRGVGLACQEYYQKGARSFISSSGGNAGLAVAYAGRMLGIPVTVVVPETTSKRAIELLRLEQAQVLVHGSSWQEANQFASTMTGDTD--------AFIHPFDDPLLWKGHATMIDEVVAAGLR------PDAVVLSVGGGGLMCGVIEGLARN----GLANVPVIAMETEGAASFNAAANAGQSVEIETISTVATSLGAKRVCDKAVEYAIS---------------RPVISNKVTDAGAVRACLQFADDHRIVTEPACGAALACVYEK--KAVLDAFN------NILVIVCGGATSTLEQLMLM 301          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|1126180681|ref|XP_019622791.1| (PREDICTED: L-serine dehydratase/L-threonine deaminase-like [Branchiostoma belcheri] >gi|1126180683|ref|XP_019622792.1| PREDICTED: L-serine dehydratase/L-threonine deaminase-like [Branchiostoma belcheri])

HSP 1 Score: 236.498 bits (602), Expect = 3.130e-71
Identity = 154/351 (43.87%), Postives = 212/351 (60.40%), Query Frame = 0
Query:   78 KEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGG-RPVVIVVCGGSGITPEILVEMERGLGV 427
            K+ + + +PL+ SHP+S       +YLKL+ +QPS +FK RG++ LC    ++GA+  V SSGGNAGL+AA   R LG+P  +IVP +T    +E++R +GA VEV GK W++++     + E+ G         YIPP+DHP++WEGH++LV EL      G +++ P AI+ SVGGGGLLCG+  GL     + GW DV VV +ET+GA SF A + AG++V + +I +VA  LGA  V   A   ++                    S VVTD EAV+AC  FL D RLLVEPACGAALA VYS R+  RL+      GG   VV+VVCGG+ IT + L   +  LG+
Sbjct:    4 KDKLYINTPLLESHPLSK-HAGITVYLKLENVQPSATFKIRGISHLCQKALKEGAKHFVCSSGGNAGLAAAYSARKLGVPATIIVPESTPTFTVERLRGEGATVEVVGKVWDDSNQHTLKLAEQPG-------FVYIPPFDHPVIWEGHASLVQELA-----GTLQDKPGAIILSVGGGGLLCGVVAGLR----KVGWTDVPVVAMETQGADSFNAAVTAGKLVTIPDITSVAKCLGAKTVAQEAFNLSKQ---------------HPIHSVVVTDEEAVEACAKFLDDERLLVEPACGAALAAVYS-RVISRLQDQGRLPGGIASVVVVVCGGNNITLQQLDTWKTQLGL 321          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|546319198|ref|XP_005716956.1| (similar to serine dehydratase [Chondrus crispus] >gi|507113513|emb|CDF37137.1| similar to serine dehydratase [Chondrus crispus])

HSP 1 Score: 236.113 bits (601), Expect = 1.030e-70
Identity = 171/377 (45.36%), Postives = 229/377 (60.74%), Query Frame = 0
Query:   45 MADITTNPST--SSTPAAPSPGIAATGTGARRSPGKEAMRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAA-GEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGITPEIL 418
            MA +T +P++     P +  P     GT +  +P +E M +++PL+ S P  S  +   + LKLD LQP+GSFK RG   LCS+    G R  VSSSGGNAG + A  G++L +PV +IVPS+T   M+++++  GA V V G  W+EAD  AR +VE   RE GP A+ +I P+DHPLLWEGH++LV+EL    ++    + PAAIV SVGGGGL  G+ EG  R     GW DV +V  ETEGAASFAA +AA GEVV+L EI +VA SLGAL V+ +  ++ R G              R  +  VV+D EAV+AC      HR+LVEPACGAA+A V        LK     +G  P+V+VVCGG+  +P +L
Sbjct:    1 MAFVTPSPASFRGKLPLSRPPFRHEFGTTSMVAPPQEKMHIRTPLVPS-PSISAPSGRQVLLKLDNLQPAGSFKIRGHGHLCSSAAANGVRHFVSSSGGNAGAAVAHAGQVLAVPVTIIVPSSTPQFMIDRLKESGASVVVHGAVWDEADRYAREIVE---RE-GPNAI-HISPFDHPLLWEGHASLVEEL----KDDLAGKKPAAIVVSVGGGGLFLGVAEGTRRV----GWGDVPIVTAETEGAASFAAMVAAGGEVVQLKEISSVAKSLGALAVSDKCAQWVREG--------------RKVVPVVVSDREAVEACSLLAVKHRVLVEPACGAAIAAV--------LKGVDVGEG--PIVVVVCGGNMASPALL 339          
BLAST of EWM24737.1 vs. NCBI_GenBank
Match: gi|489317456|ref|WP_003224817.1| (serine dehydratase [Pseudomonas fluorescens] >gi|404304273|gb|EJZ58235.1| Threonine dehydratase [Pseudomonas fluorescens R124])

HSP 1 Score: 228.409 bits (581), Expect = 2.536e-68
Identity = 148/334 (44.31%), Postives = 197/334 (58.98%), Query Frame = 0
Query:   81 MRVKSPLIYSHPMSSLENAPPIYLKLDALQPSGSFKDRGMATLCSTLQRQGARRLVSSSGGNAGLSAALCGRILGMPVQVIVPSTTKPLMLEKIRAQGAKVEVFGKNWNEADARARWVVEEGGREGGPEAVAYIPPYDHPLLWEGHSTLVDELVEGGREGGMEEAPAAIVASVGGGGLLCGIYEGLSRYEGRAGWEDVGVVGVETEGAASFAAGLAAGEVVRLTEIQTVATSLGALEVTPRALEYARSGGRAGGRDGGQDKGPRLTLSEVVTDAEAVQACRAFLRDHRLLVEPACGAALALVYSPRLRKRLKAWSAAKGGRPVVIVVCGGSGIT 414
            + + +PLI S  +S+      ++LKLDALQP GSFK RG+   C T  R GA   VSSSGGNAGL+ A  GR LG+PV V+VP TT     E +  +GA+V V G +W +A+  A  ++        PE  A+I P+D PLLW GHS+L+DE+ + G++      P  IV SVGGGGLLCG+ EGL RY    GW D+ V+ VETEGAASF A + AG+ + +  I ++ATSLGA  +  +A +Y  +                   S VVTD  A+ AC  FL DHR+LVEPACGAAL+L Y+      L+ +      R V+I+ CGG+  T
Sbjct:    3 LHINTPLIESRHLSAAAGRS-VWLKLDALQPCGSFKIRGVGHACETHHRHGATHFVSSSGGNAGLAVAYAGRQLGIPVTVVVPQTTSERAKELLSLEGAEVIVHGDSWQKANELALTLI-------SPEK-AFIHPFDDPLLWSGHSSLIDEVAQAGQK------PDVIVLSVGGGGLLCGVVEGLQRY----GWHDIPVIAVETEGAASFHAAVDAGKPIEIEHIDSIATSLGAKRICDQAFQYTNT---------------HKIDSVVVTDQSALDACERFLLDHRVLVEPACGAALSLAYN---HHSLEPY------RKVLIIACGGATAT 293          
The following BLAST results are available for this feature:
BLAST of EWM24737.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106275|gb|EWM24737.1|0.000e+0100.00l-serine ammonia-lyase [Nannochloropsis gaditana][more]
gi|219114171|ref|XP_002176259.1|9.264e-9048.68l-serine ammonia-lyase [Phaeodactylum tricornutum ... [more]
gi|1210529904|dbj|GAX11437.1|1.380e-8450.74L-serine dehydratase [Fistulifera solaris][more]
gi|1072231398|gb|OEU16130.1|1.403e-8249.16tryptophan synthase beta subunit-like PLP-dependen... [more]
gi|223999407|ref|XP_002289376.1|4.028e-8149.33serine/threonine deaminase, partial [Thalassiosira... [more]
gi|397607588|gb|EJK59741.1|1.628e-7645.76hypothetical protein THAOC_20000 [Thalassiosira oc... [more]
gi|671626445|ref|WP_031591475.1|1.349e-7444.28serine dehydratase [Pantoea agglomerans][more]
gi|1126180681|ref|XP_019622791.1|3.130e-7143.87PREDICTED: L-serine dehydratase/L-threonine deamin... [more]
gi|546319198|ref|XP_005716956.1|1.030e-7045.36similar to serine dehydratase [Chondrus crispus] >... [more]
gi|489317456|ref|WP_003224817.1|2.536e-6844.31serine dehydratase [Pseudomonas fluorescens] >gi|4... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5949rna5949Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications