EWM24746.1, cds5928 (CDS) Nannochloropsis gaditana

Overview
NameEWM24746.1
Unique Namecds5928
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:169956..170372 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24746.1
Productcysteine protease atg4b-like protein
Orig transcript idgnl|cribi|Naga_101138g1.1647.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:169956..170372 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0009056catabolic process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR005078Peptidase_C54
Homology
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|585106291|gb|EWM24746.1| (cysteine protease atg4b-like protein [Nannochloropsis gaditana])

HSP 1 Score: 283.493 bits (724), Expect = 6.948e-97
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 MPTSLPSRPQYVPVSTCPLSTSSAHTVRPKEIVFELFLPLAPLSAARRASASSSSSPSSSVTGRWILGKRYDPEDLDGWTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLRCERGWRGVHVET 138
            MPTSLPSRPQYVPVSTCPLSTSSAHTVRPKEIVFELFLPLAPLSAARRASASSSSSPSSSVTGRWILGKRYDPEDLDGWTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLRCERGWRGVHVET
Sbjct:    1 MPTSLPSRPQYVPVSTCPLSTSSAHTVRPKEIVFELFLPLAPLSAARRASASSSSSPSSSVTGRWILGKRYDPEDLDGWTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLRCERGWRGVHVET 138          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|301104974|ref|XP_002901571.1| (cysteine protease family C54, putative [Phytophthora infestans T30-4] >gi|262100575|gb|EEY58627.1| cysteine protease family C54, putative [Phytophthora infestans T30-4])

HSP 1 Score: 88.9669 bits (219), Expect = 2.995e-18
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   56 SPSSSVTG-RWILGKRYDPE---DLDGWTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLR--CERGWR 132
            +PS++++   W+LGKRYD     D D + + F SI WFTYR  +P M PY +T DAGWGCMLRSAQM++G+ L R    R WR
Sbjct:   14 TPSAALSAPVWLLGKRYDDVAAVDFDAYKRSFESILWFTYRRDYPAMTPYEHTSDAGWGCMLRSAQMLLGQALQRRLLGRDWR 96          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|953497235|emb|CEG41544.1| (cysteine protease atg4b [Plasmopara halstedii])

HSP 1 Score: 83.5741 bits (205), Expect = 3.152e-16
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 0
Query:   65 WILGKRYDPEDLDG---WTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLRC--ERGWR 132
            W+LG+RYD         + ++F SI WFTYR  FP M PY +T DAGWGCMLRSAQM++G+ L RC   R WR
Sbjct:   24 WLLGQRYDDLAAADFDAYKRNFESILWFTYRRDFPVMTPYDFTSDAGWGCMLRSAQMILGQALQRCLLGRDWR 96          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|635368366|emb|CCI43467.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 81.2629 bits (199), Expect = 3.388e-15
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   50 SASSSSSPSSSVTGRWILGKRYDPEDLD-------GWTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLR 126
            SA S  + S + +   +LG RY P+D D        +   F SI W+TYR  F TM PY +T DAGWGCMLRSAQM++ E   R
Sbjct:    4 SALSDPNYSRNPSKLLLLGDRYSPQDFDTVDCLKHAYHNAFESILWYTYRRDFETMTPYEFTSDAGWGCMLRSAQMLLSEAFKR 87          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|325184648|emb|CCA19140.1| (cysteine protease family C54 putative [Albugo laibachii Nc14])

HSP 1 Score: 80.4925 bits (197), Expect = 5.288e-15
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 0
Query:   58 SSSVTGRWILGKRYDPEDLD-------GWTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLR 126
            S + +  W+LG  Y P+D D        +   F SI W+TYR  F TM PY +T DAGWGCMLRSAQM++ E   R
Sbjct:   68 SQNSSKLWLLGDCYSPQDFDNFDSMKDAYHDAFESILWYTYRRDFETMVPYDFTSDAGWGCMLRSAQMLLSEAFKR 143          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|970656849|gb|KUF94811.1| (hypothetical protein AM588_10010208 [Phytophthora nicotianae])

HSP 1 Score: 78.5666 bits (192), Expect = 1.371e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0
Query:   56 SPSSSVTG-RWILGKRYDPEDLDG---WTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLR--CERGWR 132
            +PS++++   W+LGKRYD         + + F SI WFTYR  +P M PY +T DAGWGCMLRSAQM++G+ L R    R WR
Sbjct:   14 TPSAALSAPVWLLGKRYDDVAAADFDAYKRSFESILWFTYRRDYPAMTPYEHTSDAGWGCMLRSAQMLLGQALQRRILGREWR 96          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|970643362|gb|KUF84640.1| (Cysteine protease ATG4B [Phytophthora nicotianae])

HSP 1 Score: 78.9518 bits (193), Expect = 1.478e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0
Query:   56 SPSSSVTG-RWILGKRYDPEDLDG---WTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLR--CERGWR 132
            +PS++++   W+LGKRYD         + + F SI WFTYR  +P M PY +T DAGWGCMLRSAQM++G+ L R    R WR
Sbjct:   14 TPSAALSAPVWLLGKRYDDVAAADFDAYKRSFESILWFTYRRDYPAMTPYEHTSDAGWGCMLRSAQMLLGQALQRRILGREWR 96          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|566021576|gb|ETI44487.1| (hypothetical protein F443_10814 [Phytophthora parasitica P1569] >gi|568047258|gb|ETM44342.1| hypothetical protein L914_10407 [Phytophthora parasitica])

HSP 1 Score: 78.9518 bits (193), Expect = 1.606e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0
Query:   56 SPSSSVTG-RWILGKRYDPEDLDG---WTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLR--CERGWR 132
            +PS++++   W+LGKRYD         + + F SI WFTYR  +P M PY +T DAGWGCMLRSAQM++G+ L R    R WR
Sbjct:   14 TPSAALSAPVWLLGKRYDDVAAADFDAYKRSFESILWFTYRRDYPAMTPYEHTSDAGWGCMLRSAQMLLGQALQRRILGREWR 96          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|568016867|gb|ETL91044.1| (hypothetical protein L917_10368 [Phytophthora parasitica])

HSP 1 Score: 78.9518 bits (193), Expect = 1.647e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0
Query:   56 SPSSSVTG-RWILGKRYDPEDLDG---WTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLR--CERGWR 132
            +PS++++   W+LGKRYD         + + F SI WFTYR  +P M PY +T DAGWGCMLRSAQM++G+ L R    R WR
Sbjct:  104 TPSAALSAPVWLLGKRYDDVAAADFDAYKRSFESILWFTYRRDYPAMTPYEHTSDAGWGCMLRSAQMLLGQALQRRILGREWR 186          
BLAST of EWM24746.1 vs. NCBI_GenBank
Match: gi|675195753|ref|XP_008906761.1| (hypothetical protein PPTG_12477 [Phytophthora parasitica INRA-310] >gi|567958903|gb|ETK84486.1| hypothetical protein L915_10556 [Phytophthora parasitica] >gi|567987628|gb|ETL37926.1| hypothetical protein L916_10445 [Phytophthora parasitica] >gi|568093158|gb|ETN07957.1| hypothetical protein PPTG_12477 [Phytophthora parasitica INRA-310] >gi|570325195|gb|ETO73143.1| hypothetical protein F444_10890 [Phytophthora parasitica P1976] >gi|570949070|gb|ETP14327.1| hypothetical protein F441_10739 [Phytophthora parasitica CJ01A1] >gi|570982183|gb|ETP42374.1| hypothetical protein F442_10711 [Phytophthora parasitica P10297])

HSP 1 Score: 78.5666 bits (192), Expect = 1.772e-14
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0
Query:   56 SPSSSVTG-RWILGKRYDPEDLDG---WTQHFRSIPWFTYRHTFPTMAPYPYTDDAGWGCMLRSAQMMMGEGLLR--CERGWR 132
            +PS++++   W+LGKRYD         + + F SI WFTYR  +P M PY +T DAGWGCMLRSAQM++G+ L R    R WR
Sbjct:   14 TPSAALSAPVWLLGKRYDDVAAADFDAYKRSFESILWFTYRRDYPAMTPYEHTSDAGWGCMLRSAQMLLGQALQRRILGREWR 96          
The following BLAST results are available for this feature:
BLAST of EWM24746.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106291|gb|EWM24746.1|6.948e-97100.00cysteine protease atg4b-like protein [Nannochlorop... [more]
gi|301104974|ref|XP_002901571.1|2.995e-1851.81cysteine protease family C54, putative [Phytophtho... [more]
gi|953497235|emb|CEG41544.1|3.152e-1654.79cysteine protease atg4b [Plasmopara halstedii][more]
gi|635368366|emb|CCI43467.1|3.388e-1546.43unnamed protein product [Albugo candida][more]
gi|325184648|emb|CCA19140.1|5.288e-1547.37cysteine protease family C54 putative [Albugo laib... [more]
gi|970656849|gb|KUF94811.1|1.371e-1449.40hypothetical protein AM588_10010208 [Phytophthora ... [more]
gi|970643362|gb|KUF84640.1|1.478e-1449.40Cysteine protease ATG4B [Phytophthora nicotianae][more]
gi|566021576|gb|ETI44487.1|1.606e-1449.40hypothetical protein F443_10814 [Phytophthora para... [more]
gi|568016867|gb|ETL91044.1|1.647e-1449.40hypothetical protein L917_10368 [Phytophthora para... [more]
gi|675195753|ref|XP_008906761.1|1.772e-1449.40hypothetical protein PPTG_12477 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5943rna5943Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications