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Properties
| Property Name | Value |
|---|
| Product | cysteine protease atg4b-like protein |
| Orig transcript id | gnl|cribi|Naga_101138g1.1647.mrna |
| Orig protein id | gnl|cribi|Naga_101138g1.1647 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:169592..171057 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5943 ID=rna5943|Name=rna5943|organism=Nannochloropsis gaditana|type=mRNA|length=372bp
ATGCATTCGCATGTGAAGGCTTGGCGGGAAGCAGACCCTCGAGACCCTGA
CGACGGCGGTGTCACCACTGGTGTTGAACAGTGTCTACAACGCCTCCGCC
CGCGCATTCCCCGAGTGTGTGTGGCTCGTGCTGGTATTCGCCTTGGTGGG
CGCCGAGGCTTCCCTCTACCTGGCATTTCGCGCCTTAAGGAGGAACGAGG
GCCGGAAGAAGGGAGAAAAGGACGGAGGGAAGGCTCTGTTGGCGTCGATT
GGCGAAGACGGGGACGAGGAAAGGCAAATGGATGTATAACACCTGACGGT
GGGACGCGTGTGCCATGCCATCGCTCACAGATGGCAGGTTCGAAGGGCGT
CTGGAATGCAGGTACAAATTGA back to topprotein sequence of rna5943 >rna5943-protein ID=rna5943-protein|Name=rna5943|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MPTSLPSRPQYVPVSTCPLSTSSAHTVRPKEIVFELFLPLAPLSAARRAS
ASSSSSPSSSVTGRWILGKRYDPEDLDGWTQHFRSIPWFTYRHTFPTMAP
YPYTDDAGWGCMLRSAQMMMGEGLLRCERGWRGVHVET back to topmRNA from alignment at CM002467.1:169592..171057+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5943 ID=rna5943|Name=rna5943|organism=Nannochloropsis gaditana|type=mRNA|length=1466bp|location=Sequence derived from alignment at CM002467.1:169592..171057+ (Nannochloropsis gaditana)
CAAGTGAACTTATCTTGCATGTAATGCTCGTTCTTTGGCAGGTCTACAAA
CATGAGGATCATGTTCACTGGCCGTTACCCTGTTCTCGGTTACATGCCAC
AACCAATTTTCATATTCACACTCGTTGTCAGACATTTATGAAGAAACTGC
CGGCAAGCATGAGTACTGTTTCATCTCATCGTGATGTGATATACCTTAAT
CAAGTCTCCTCGTGTGGCACAAGACGATAACGTGGCAGCGTGGACGTCAT
ACTTCAGCCAGAGATAGCCTGGCGTCCCTTTCCGGACCTCAATAACTCTA
ACCCTCACACGCACATGTTTACCCACCAATGTCCCTTCTGTTCACATAAT
TTGTCACAGAGGCTATGCCtacatcccttccctcccgtccgcaATACGTT
CCCGTGTCTACCTGCCCcctctcaacctcctccgcccacaCCGTCCGTCC
TAAGGAAATTGTTTTTGAATtgttccttcccctcgctcctttgtCTGCAG
CACGACGTGCTTcagcgtcctcgtcttcctccccttcttcctccgtgacG
GGCCGATGGATTTTAGGAAAACGCTACGATCCCGAAGACCTGGATGGATG
GACTCAGCATTTTCGCTCCATCCCTTGGTTCACCTACCGCCATACGTTCC
CGACAATGGCACCGTACCCTTACACCGATGATGCCGGATGGGGATGCATG
CTTCGTTCGGCCCAAATGATGATGGGGGAAGGGTTGTTGAGGTGCGaacg
gggatggaggggtgtACATGTGGAGACATAGCGGTCATTTTTCTATTCAA
GGAGGATGCATGACGGCGTGAATCGCTATGAGGAGGGCAATATTTGTAGC
TGGTTGCTTGTAATTTGACCAACATACAAGGAAAGTCCTGTAGACCAAAC
GTCTGGTGacaacctctccctccctccctcccttcctccctcccttcctc
cgttccccGTCGCTGGCTTTCCTCCGCAGGCATGTCTTTGGGAGCAACTG
GCGCGCACCACGGGACTTGGACGACCTGAAATCCAATCCTTTGTACTGTC
AGCTCTTGGACTCCTTCGTCGACGCACCAGGGCCCAACCACGTcttctcg
gtccacaacaTGGTTCAGGTAGGCGAAGGGGTGCCTGTCCTGGGTGGAAG
GCAACGTGTTTAAATTTCCGTATCTCccgcgcccttccctctttttacAA
AAGATTGGCATGTCCTACGATAAGCTCCCTGGGGAGTGGTACGGCCCCAC
CACTGTCGCCTACATCCTCCgggacctcgccctcctccaccgccgacAGC
AgcaagacgtggaggaggaagcgcacgCCTTGCAACCGTTACAGCCTTTA
CAAGCGTCACAACCGTTACAACCGTTACGTGCGAGATGTGCACCCGAGGA
TTCGCCGGTGCCACCCACGCCAGCGTCGGGGGAGAATaggcaggaagggc
aagagaggagtgaagg back to topCoding sequence (CDS) from alignment at CM002467.1:169592..171057+ >rna5943 ID=rna5943|Name=rna5943|organism=Nannochloropsis gaditana|type=CDS|length=417bp|location=Sequence derived from alignment at CM002467.1:169592..171057+ (Nannochloropsis gaditana)
ATGCCtacatcccttccctcccgtccgcaATACGTTCCCGTGTCTACCTG
CCCcctctcaacctcctccgcccacaCCGTCCGTCCTAAGGAAATTGTTT
TTGAATtgttccttcccctcgctcctttgtCTGCAGCACGACGTGCTTca
gcgtcctcgtcttcctccccttcttcctccgtgacGGGCCGATGGATTTT
AGGAAAACGCTACGATCCCGAAGACCTGGATGGATGGACTCAGCATTTTC
GCTCCATCCCTTGGTTCACCTACCGCCATACGTTCCCGACAATGGCACCG
TACCCTTACACCGATGATGCCGGATGGGGATGCATGCTTCGTTCGGCCCA
AATGATGATGGGGGAAGGGTTGTTGAGGTGCGaacggggatggaggggtg
tACATGTGGAGACATAG back to top
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