EWM24781.1, cds5891 (CDS) Nannochloropsis gaditana

Overview
NameEWM24781.1
Unique Namecds5891
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:51435..51503 +
Alignment locationCM002467.1:51716..51799 +
Alignment locationCM002467.1:51995..52066 +
Alignment locationCM002467.1:52350..52440 +
Alignment locationCM002467.1:52605..52900 +
Alignment locationCM002467.1:53060..53188 +

Link to JBrowse

Properties
Property NameValue
Start range51435
Start range.
Protein idEWM24781.1
Productu4 u6 small nuclear ribonucleoprotein prp3
Partialtrue
Orig transcript idgnl|cribi|Naga_101342g2.9594.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:51435..51503 +
CM002467.1supercontigCM002467.1:51716..51799 +
CM002467.1supercontigCM002467.1:51995..52066 +
CM002467.1supercontigCM002467.1:52350..52440 +
CM002467.1supercontigCM002467.1:52605..52900 +
CM002467.1supercontigCM002467.1:53060..53188 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0046540U4/U6 x U5 tri-snRNP complex
Vocabulary: INTERPRO
TermDefinition
IPR027104Prp3
IPR010541DUF1115
IPR013881Pre-mRNA_splic_Prp3
Homology
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|585106356|gb|EWM24781.1| (u4 u6 small nuclear ribonucleoprotein prp3, partial [Nannochloropsis gaditana])

HSP 1 Score: 497.664 bits (1280), Expect = 5.886e-178
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 AGLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGGKEGEGGAEE 246
            AGLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGGKEGEGGAEE
Sbjct:    1 AGLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGGKEGEGGAEE 246          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|675202419|ref|XP_008910094.1| (hypothetical protein PPTG_14507 [Phytophthora parasitica INRA-310] >gi|568089860|gb|ETN04700.1| hypothetical protein PPTG_14507 [Phytophthora parasitica INRA-310])

HSP 1 Score: 243.817 bits (621), Expect = 2.635e-73
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W             G  E E+E + ED  ED  +RG G C LVW+GVVA+ +F  F+FQECRT  TARKV E K V HY D+  ++ +    
Sbjct:  408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|970647602|gb|KUF87381.1| (hypothetical protein AM588_10001470 [Phytophthora nicotianae])

HSP 1 Score: 243.817 bits (621), Expect = 2.722e-73
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W             G  E E+E + ED  ED  +RG G C LVW+GVVA+ +F  F+FQECRT  TARKV E K V HY D+  ++ +    
Sbjct:  406 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 621          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|568012696|gb|ETL86873.1| (hypothetical protein L917_13776 [Phytophthora parasitica] >gi|568042718|gb|ETM40038.1| hypothetical protein L914_13901 [Phytophthora parasitica] >gi|570976104|gb|ETP37975.1| hypothetical protein F442_14288 [Phytophthora parasitica P10297])

HSP 1 Score: 243.817 bits (621), Expect = 2.749e-73
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W             G  E E+E + ED  ED  +RG G C LVW+GVVA+ +F  F+FQECRT  TARKV E K V HY D+  ++ +    
Sbjct:  408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|570944612|gb|ETP09869.1| (hypothetical protein F441_14323 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 243.817 bits (621), Expect = 2.899e-73
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W             G  E E+E + ED  ED  +RG G C LVW+GVVA+ +F  F+FQECRT  TARKV E K V HY D+  ++ +    
Sbjct:  408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|567983174|gb|ETL33573.1| (hypothetical protein L916_13991 [Phytophthora parasitica])

HSP 1 Score: 243.817 bits (621), Expect = 2.993e-73
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W             G  E E+E + ED  ED  +RG G C LVW+GVVA+ +F  F+FQECRT  TARKV E K V HY D+  ++ +    
Sbjct:  408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|567954519|gb|ETK80152.1| (hypothetical protein L915_14093 [Phytophthora parasitica] >gi|570320840|gb|ETO68788.1| hypothetical protein F444_14443 [Phytophthora parasitica P1976])

HSP 1 Score: 243.817 bits (621), Expect = 3.025e-73
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W             G  E E+E + ED  ED  +RG G C LVW+GVVA+ +F  F+FQECRT  TARKV E K V HY D+  ++ +    
Sbjct:  408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|301116964|ref|XP_002906210.1| (U4/U6 small nuclear ribonucleoprotein Prp3, putative [Phytophthora infestans T30-4] >gi|262107559|gb|EEY65611.1| U4/U6 small nuclear ribonucleoprotein Prp3, putative [Phytophthora infestans T30-4])

HSP 1 Score: 242.662 bits (618), Expect = 7.242e-73
Identity = 121/236 (51.27%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W       G +E E E + E+        ED  +RG G C LVW+GVVA+ +F  F+FQECRT  TARKV E K V HY D+  ++ +    
Sbjct:  403 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVREQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMIRRIDW------NGAREAEHESDSED--------EDATKRGNG-CLLVWQGVVARKAFNNFRFQECRTSVTARKVMEAKNVVHYWDLVEKSAETADA 618          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|970643945|gb|KUF84995.1| (U4/U6 small nuclear ribonucleoprotein Prp3 [Phytophthora nicotianae])

HSP 1 Score: 241.891 bits (616), Expect = 1.505e-72
Identity = 121/236 (51.27%), Postives = 159/236 (67.37%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W             G  E E+E + ED  ED  +RG G C LVW+GVVA+ +F  F+FQ CRT  TARKV E K V HY D+  ++ +    
Sbjct:  406 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQXCRTSATARKVMEAKNVVHYWDLVEKSAETAAA 621          
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|566017142|gb|ETI40053.1| (hypothetical protein F443_14445 [Phytophthora parasitica P1569])

HSP 1 Score: 240.35 bits (612), Expect = 5.602e-72
Identity = 121/236 (51.27%), Postives = 159/236 (67.37%), Query Frame = 0
Query:    2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237
            GL+PPPEPK+ LSN M+VL+ +++ADPSA+  K++ QI +REKNHEMRNLARKLTPEERREKK RKI  D    I VALF+V  L +P+ R+K+DVNAQQ  L+G VL C+D       +++VVVEGG ++++++ KLM RRI W             G  E E+E + ED  ED  +RG G C LVW+GVVA+ +F  F+FQECRT  TA KV E K V HY D+  ++ +    
Sbjct:  408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATACKVMEAKNVVHYWDLVEKSAETAAA 623          
The following BLAST results are available for this feature:
BLAST of EWM24781.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106356|gb|EWM24781.1|5.886e-178100.00u4 u6 small nuclear ribonucleoprotein prp3, partia... [more]
gi|675202419|ref|XP_008910094.1|2.635e-7351.69hypothetical protein PPTG_14507 [Phytophthora para... [more]
gi|970647602|gb|KUF87381.1|2.722e-7351.69hypothetical protein AM588_10001470 [Phytophthora ... [more]
gi|568012696|gb|ETL86873.1|2.749e-7351.69hypothetical protein L917_13776 [Phytophthora para... [more]
gi|570944612|gb|ETP09869.1|2.899e-7351.69hypothetical protein F441_14323 [Phytophthora para... [more]
gi|567983174|gb|ETL33573.1|2.993e-7351.69hypothetical protein L916_13991 [Phytophthora para... [more]
gi|567954519|gb|ETK80152.1|3.025e-7351.69hypothetical protein L915_14093 [Phytophthora para... [more]
gi|301116964|ref|XP_002906210.1|7.242e-7351.27U4/U6 small nuclear ribonucleoprotein Prp3, putati... [more]
gi|970643945|gb|KUF84995.1|1.505e-7251.27U4/U6 small nuclear ribonucleoprotein Prp3 [Phytop... [more]
gi|566017142|gb|ETI40053.1|5.602e-7251.27hypothetical protein F443_14445 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5906rna5906Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications