EWM24781.1, cds5891 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|585106356|gb|EWM24781.1| (u4 u6 small nuclear ribonucleoprotein prp3, partial [Nannochloropsis gaditana]) HSP 1 Score: 497.664 bits (1280), Expect = 5.886e-178 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0 Query: 1 AGLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGGKEGEGGAEE 246 AGLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGGKEGEGGAEE Sbjct: 1 AGLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGGKEGEGGAEE 246
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|675202419|ref|XP_008910094.1| (hypothetical protein PPTG_14507 [Phytophthora parasitica INRA-310] >gi|568089860|gb|ETN04700.1| hypothetical protein PPTG_14507 [Phytophthora parasitica INRA-310]) HSP 1 Score: 243.817 bits (621), Expect = 2.635e-73 Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G E E+E + ED ED +RG G C LVW+GVVA+ +F F+FQECRT TARKV E K V HY D+ ++ + Sbjct: 408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|970647602|gb|KUF87381.1| (hypothetical protein AM588_10001470 [Phytophthora nicotianae]) HSP 1 Score: 243.817 bits (621), Expect = 2.722e-73 Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G E E+E + ED ED +RG G C LVW+GVVA+ +F F+FQECRT TARKV E K V HY D+ ++ + Sbjct: 406 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 621
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|568012696|gb|ETL86873.1| (hypothetical protein L917_13776 [Phytophthora parasitica] >gi|568042718|gb|ETM40038.1| hypothetical protein L914_13901 [Phytophthora parasitica] >gi|570976104|gb|ETP37975.1| hypothetical protein F442_14288 [Phytophthora parasitica P10297]) HSP 1 Score: 243.817 bits (621), Expect = 2.749e-73 Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G E E+E + ED ED +RG G C LVW+GVVA+ +F F+FQECRT TARKV E K V HY D+ ++ + Sbjct: 408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|570944612|gb|ETP09869.1| (hypothetical protein F441_14323 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 243.817 bits (621), Expect = 2.899e-73 Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G E E+E + ED ED +RG G C LVW+GVVA+ +F F+FQECRT TARKV E K V HY D+ ++ + Sbjct: 408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|567983174|gb|ETL33573.1| (hypothetical protein L916_13991 [Phytophthora parasitica]) HSP 1 Score: 243.817 bits (621), Expect = 2.993e-73 Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G E E+E + ED ED +RG G C LVW+GVVA+ +F F+FQECRT TARKV E K V HY D+ ++ + Sbjct: 408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|567954519|gb|ETK80152.1| (hypothetical protein L915_14093 [Phytophthora parasitica] >gi|570320840|gb|ETO68788.1| hypothetical protein F444_14443 [Phytophthora parasitica P1976]) HSP 1 Score: 243.817 bits (621), Expect = 3.025e-73 Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G E E+E + ED ED +RG G C LVW+GVVA+ +F F+FQECRT TARKV E K V HY D+ ++ + Sbjct: 408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATARKVMEAKNVVHYWDLVEKSAETAAA 623
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|301116964|ref|XP_002906210.1| (U4/U6 small nuclear ribonucleoprotein Prp3, putative [Phytophthora infestans T30-4] >gi|262107559|gb|EEY65611.1| U4/U6 small nuclear ribonucleoprotein Prp3, putative [Phytophthora infestans T30-4]) HSP 1 Score: 242.662 bits (618), Expect = 7.242e-73 Identity = 121/236 (51.27%), Postives = 160/236 (67.80%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G +E E E + E+ ED +RG G C LVW+GVVA+ +F F+FQECRT TARKV E K V HY D+ ++ + Sbjct: 403 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVREQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMIRRIDW------NGAREAEHESDSED--------EDATKRGNG-CLLVWQGVVARKAFNNFRFQECRTSVTARKVMEAKNVVHYWDLVEKSAETADA 618
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|970643945|gb|KUF84995.1| (U4/U6 small nuclear ribonucleoprotein Prp3 [Phytophthora nicotianae]) HSP 1 Score: 241.891 bits (616), Expect = 1.505e-72 Identity = 121/236 (51.27%), Postives = 159/236 (67.37%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G E E+E + ED ED +RG G C LVW+GVVA+ +F F+FQ CRT TARKV E K V HY D+ ++ + Sbjct: 406 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQXCRTSATARKVMEAKNVVHYWDLVEKSAETAAA 621
BLAST of EWM24781.1 vs. NCBI_GenBank
Match: gi|566017142|gb|ETI40053.1| (hypothetical protein F443_14445 [Phytophthora parasitica P1569]) HSP 1 Score: 240.35 bits (612), Expect = 5.602e-72 Identity = 121/236 (51.27%), Postives = 159/236 (67.37%), Query Frame = 0 Query: 2 GLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRNLARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQQSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQEGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAGFKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGG 237 GL+PPPEPK+ LSN M+VL+ +++ADPSA+ K++ QI +REKNHEMRNLARKLTPEERREKK RKI D I VALF+V L +P+ R+K+DVNAQQ L+G VL C+D +++VVVEGG ++++++ KLM RRI W G E E+E + ED ED +RG G C LVW+GVVA+ +F F+FQECRT TA KV E K V HY D+ ++ + Sbjct: 408 GLLPPPEPKVKLSNMMRVLSEQAVADPSAIERKVRDQIAQREKNHEMRNLARKLTPEERREKKLRKIKEDAAGDIHVALFKVPDLSNPQHRFKVDVNAQQYHLTGGVLICKD-----SNINMVVVEGGKKAIKQYTKLMMRRIDW------------NGAREAEQESDSED--EDAAKRGNG-CLLVWQGVVARKAFNNFRFQECRTSATACKVMEAKNVVHYWDLVEKSAETAAA 623 The following BLAST results are available for this feature:
BLAST of EWM24781.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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