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Properties
| Property Name | Value |
|---|
| Product | u4 u6 small nuclear ribonucleoprotein prp3 |
| Orig transcript id | gnl|cribi|Naga_101342g2.9594.mrna |
| Orig protein id | gnl|cribi|Naga_101342g2.9594 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:51435..53188 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5906 ID=rna5906|Name=rna5906|organism=Nannochloropsis gaditana|type=mRNA|length=1114bp
CCTCGGTCGCGCCCACGCCAGGCTGTGGGTATTCCCTCCCGACGGGGACA
AGGAAGGGCGGGCGCTCCAAACCTACATGGGCCATGCCGCCCGCCTCTCT
GCCTGTGCTTTCCACCCGTGTGGTCGGTACTTGGGCACGACGAGCTGGGA
CTATACCTGGAGGCTGTGGGACGTGGAGAGCGGGCAGGAACTGCTGCTTC
AGGACGGGCACTACAAGGAGACGCACGCCATAGCCTTCCAGGGAGACGGC
GCTCTGGTCGTGACTGGAGACTATGCGGGTATTGGGCATGTCTGGGACTT
ACGGTCCGGGAAGAGCATCTACCAGCTGCATGGACACACCGAGAAGGTCC
TTTGCGCCGACTGGAGCCCCTCCGGGTGAGTTTTTACTGGGTTCTTTCAT
GCCCGCACATAGATGGTCTTGCCCCTAACTCCTTCCTTTGCAGATTCTCT
CCTAGGGCCGCCCTACCACCGCCCTTGGCCCTTCTGCCCATTCTTGGAAC
CGTCGCCGCAACGCAACATTGTACGAATTCCTCCTCACGAAGCCCCCTGC
CTCCCTCCCTCCTTCCCTTTCTCTTTCCCATCAGCTACCAAATTGCCACG
GGCTCCTCGGAAAATGTCGTGAAGATCTGGGACGTACGGAGACGCCAGAA
CATCTACACGCTCCCGGCCCACAGCGCCCTTGTCGCCGCAGTCAAATATG
CGCCGCATGACGGTGAATTCCTGGCCACGGCCTCCTTCGATGGAAAAGCC
AAGGTGTGGGGTATGCGGGATTTCAGGCTTCTACGGACGCTTGAAGGCCA
CGAAGGGCGAGTGGTTGGAGTGGACTGGACACCCGACGGGAGGCGGCTGG
TGTCTTGCTCGCACGACAGGACCTTCAAGGTCTGGGCGGATAGTAAAGAG
TTTTGAACAGCTTGCATCTAAAGTAAACTTAAAACCACTGGCAAAGCAAT
GGATGGAATCTCCTTTTTATTGCGGGATGACTCTTTCTTTAAGTTTGCGT
TGTGAGGAGCTGAGTGGACGACAAAGTGCATTGCAGGGCATCTTAGTGAG
GAGGTTATGAGAGGAGATAACATTACCCAAAATAACCAATACGACGCGAG
GCAGGCGCCTTCCA back to topprotein sequence of rna5906 >rna5906-protein ID=rna5906-protein|Name=rna5906|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
AGLMPPPEPKMNLSNFMKVLANESIADPSAVTAKIQAQIREREKNHEMRN
LARKLTPEERREKKRRKIINDMKKQIEVALFRVRQLHSPKIRYKIDVNAQ
QSGLSGAVLTCRDPAFGEEGMHLVVVEGGPRSVRRFVKLMTRRIKWRAQQ
EGGGGQEGEGEEEEEEEEEEEDGGEDLGERGGGICELVWRGVVAKPSFAG
FKFQECRTLTTARKVFEGKGVAHYADMCFQNVDVGGGKEGEGGAEE back to topmRNA from alignment at CM002467.1:51435..53188+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5906 ID=rna5906|Name=rna5906|organism=Nannochloropsis gaditana|type=mRNA|length=1754bp|location=Sequence derived from alignment at CM002467.1:51435..53188+ (Nannochloropsis gaditana)
GCAGGCTTGATGCCTCCCCCCGAGCCGAAAATGAACCTTTCAAATTTCAT
GAAGGTCCTTGCCAacgaggtaggaagggaggaaaagagggaggacggga
ggaagggagggaaggagggaggcagaacAGGCTTACGTGGCATCTCGGAG
ATCTTACCGATGATGTTTCTCCacacctgcctcccttcttccttcttcct
ctttctttcccttcctcgatccctccctccccgttcctctcttccccctc
cctcccctccctctcccttccctcccggcaGTCCATCGCCgacccctccg
ccgtcaccgCCAAGATTCAAGCACAGATTCGTGAGCGGGAGAAGAACCAC
GAGATGCGGAATctggtagggagggaggcgggaagggataGAATGAGTCT
ACTCCCTTGGGTGGGCCCTGGTCGTGCAGAATGACTTCCTCAACGCTATC
GGTAGCTAAAGCCTCACCTCTCTCTAtcctgtctcccctcctATGTCGCC
TTtcaatcccctccttcctccccttcctccccttccttccccaccgcaTC
GTCTTGGCAGGCGCGCAAGCTCACCCcagaggaacggagggagaaaaagc
gacGAAAGATCATCAATGACATGAAGAAACaggtgagaaaggagagggaa
agagaagcgaGGAAAAGCGTGGTCCATGaacgagggagaaagggaggaac
agggagggaggtacgaAAGGAGCGACGGtaagggcgagggaggcaggaaa
gaggaggagaagggcggcggaaggaagaaggaaggaagaagagcagaaGA
TACTTTTTTCCGAGGCTTCGACCGGCCTCTCTAGTGGCGAAGatcaccct
ccccacccgtctcctccttcccttccctcctttcctcccaccctccctcc
ttccctcgccctcagATTGAAGTGGCGCTTTTTCGGGTTCGACAACTGCA
CTCCCCGAAAATCCGCTACAAAATTGACGTGAACGCCCAGCAGTCGGGGC
TTtccggtggggaggggggaagggagggagggaaggcaggaagaagaggg
aaggagggaggggaagaggacaacaGTGCTTCCTGGTAGCGCACAGACTG
ATGACGaatgccccctcctcgattcctctcccctccctctccctcctcct
cgtcgcgtctcctcccctagGAGCGGTCCTCACCTGTCGAGACCCTGCct
tcggggaggaggggatgcaCCTGGTTGTGGTCGAGGGGGGGCCGCGGTCC
GTCCGTCGTTTTGTGAAGCTGATGACGCGGCGAATCAAGTGGAGGGcgca
gcaggagggagggggggggcaggagggcgagggagaggaggaggaggagg
aggaggaggaggaggaggacgggggggaggacctgggggaaagggggggg
gggatctGTGAGCTGGTGTGGCGGGGAGTCGTCGCTAAACCCTCATTTGC
CGGCTTCAAGTTCCaggtaggaaggagaagagaggggaaggaggggagag
acaCAGGActcgaggaaggagggcggggaaggggggaaagtcTGGAGGGT
GTTGACGACTGGGAGGGGCCGAGCTCCTAAAGCCCCTCTCGTTTTCCCAT
CaattcccctcccttccccctccaggaATGCCGGACCCTGACCACTGCCC
GCAAAGTCttcgaagggaagggcgtcGCGCATTATGCGGACATGTGCTTC
CAGAACGTGGACGtcgggggcgggaaagagggggagggaggggcggagga
gtaG back to topCoding sequence (CDS) from alignment at CM002467.1:51435..53188+ >rna5906 ID=rna5906|Name=rna5906|organism=Nannochloropsis gaditana|type=CDS|length=4446bp|location=Sequence derived from alignment at CM002467.1:51435..53188+ (Nannochloropsis gaditana)
GCAGGCTTGATGCCTCCCCCCGAGCCGAAAATGAACCTTTCAAATTTCAT
GAAGGTCCTTGCCAacgagTCCATCGCCgacccctccgccgtcaccgCCA
AGATTCAAGCACAGATTCGTGAGCGGGAGAAGAACCACGAGATGCGGAAT
ctgGCGCGCAAGCTCACCCcagaggaacggagggagaaaaagcgacGAAA
GATCATCAATGACATGAAGAAACagATTGAAGTGGCGCTTTTTCGGGTTC
GACAACTGCACTCCCCGAAAATCCGCTACAAAATTGACGTGAACGCCCAG
CAGTCGGGGCTTtccgGAGCGGTCCTCACCTGTCGAGACCCTGCcttcgg
ggaggaggggatgcaCCTGGTTGTGGTCGAGGGGGGGCCGCGGTCCGTCC
GTCGTTTTGTGAAGCTGATGACGCGGCGAATCAAGTGGAGGGcgcagcag
gagggagggggggggcaggagggcgagggagaggaggaggaggaggagga
ggaggaggaggaggacgggggggaggacctgggggaaaggggggggggga
tctGTGAGCTGGTGTGGCGGGGAGTCGTCGCTAAACCCTCATTTGCCGGC
TTCAAGTTCCaggaATGCCGGACCCTGACCACTGCCCGCAAAGTCttcga
agggaagggcgtcGCGCATTATGCGGACATGTGCTTCCAGAACGTGGACG
tcgggggcgggaaagagggggagggaggggcggaggagtaGGCAGGCTTG
ATGCCTCCCCCCGAGCCGAAAATGAACCTTTCAAATTTCATGAAGGTCCT
TGCCAacgagTCCATCGCCgacccctccgccgtcaccgCCAAGATTCAAG
CACAGATTCGTGAGCGGGAGAAGAACCACGAGATGCGGAATctgGCGCGC
AAGCTCACCCcagaggaacggagggagaaaaagcgacGAAAGATCATCAA
TGACATGAAGAAACagATTGAAGTGGCGCTTTTTCGGGTTCGACAACTGC
ACTCCCCGAAAATCCGCTACAAAATTGACGTGAACGCCCAGCAGTCGGGG
CTTtccgGAGCGGTCCTCACCTGTCGAGACCCTGCcttcggggaggaggg
gatgcaCCTGGTTGTGGTCGAGGGGGGGCCGCGGTCCGTCCGTCGTTTTG
TGAAGCTGATGACGCGGCGAATCAAGTGGAGGGcgcagcaggagggaggg
ggggggcaggagggcgagggagaggaggaggaggaggaggaggaggagga
ggaggacgggggggaggacctgggggaaagggggggggggatctGTGAGC
TGGTGTGGCGGGGAGTCGTCGCTAAACCCTCATTTGCCGGCTTCAAGTTC
CaggaATGCCGGACCCTGACCACTGCCCGCAAAGTCttcgaagggaaggg
cgtcGCGCATTATGCGGACATGTGCTTCCAGAACGTGGACGtcgggggcg
ggaaagagggggagggaggggcggaggagtaGGCAGGCTTGATGCCTCCC
CCCGAGCCGAAAATGAACCTTTCAAATTTCATGAAGGTCCTTGCCAacga
gTCCATCGCCgacccctccgccgtcaccgCCAAGATTCAAGCACAGATTC
GTGAGCGGGAGAAGAACCACGAGATGCGGAATctgGCGCGCAAGCTCACC
CcagaggaacggagggagaaaaagcgacGAAAGATCATCAATGACATGAA
GAAACagATTGAAGTGGCGCTTTTTCGGGTTCGACAACTGCACTCCCCGA
AAATCCGCTACAAAATTGACGTGAACGCCCAGCAGTCGGGGCTTtccgGA
GCGGTCCTCACCTGTCGAGACCCTGCcttcggggaggaggggatgcaCCT
GGTTGTGGTCGAGGGGGGGCCGCGGTCCGTCCGTCGTTTTGTGAAGCTGA
TGACGCGGCGAATCAAGTGGAGGGcgcagcaggagggagggggggggcag
gagggcgagggagaggaggaggaggaggaggaggaggaggaggaggacgg
gggggaggacctgggggaaagggggggggggatctGTGAGCTGGTGTGGC
GGGGAGTCGTCGCTAAACCCTCATTTGCCGGCTTCAAGTTCCaggaATGC
CGGACCCTGACCACTGCCCGCAAAGTCttcgaagggaagggcgtcGCGCA
TTATGCGGACATGTGCTTCCAGAACGTGGACGtcgggggcgggaaagagg
gggagggaggggcggaggagtaGGCAGGCTTGATGCCTCCCCCCGAGCCG
AAAATGAACCTTTCAAATTTCATGAAGGTCCTTGCCAacgagTCCATCGC
CgacccctccgccgtcaccgCCAAGATTCAAGCACAGATTCGTGAGCGGG
AGAAGAACCACGAGATGCGGAATctgGCGCGCAAGCTCACCCcagaggaa
cggagggagaaaaagcgacGAAAGATCATCAATGACATGAAGAAACagAT
TGAAGTGGCGCTTTTTCGGGTTCGACAACTGCACTCCCCGAAAATCCGCT
ACAAAATTGACGTGAACGCCCAGCAGTCGGGGCTTtccgGAGCGGTCCTC
ACCTGTCGAGACCCTGCcttcggggaggaggggatgcaCCTGGTTGTGGT
CGAGGGGGGGCCGCGGTCCGTCCGTCGTTTTGTGAAGCTGATGACGCGGC
GAATCAAGTGGAGGGcgcagcaggagggagggggggggcaggagggcgag
ggagaggaggaggaggaggaggaggaggaggaggaggacgggggggagga
cctgggggaaagggggggggggatctGTGAGCTGGTGTGGCGGGGAGTCG
TCGCTAAACCCTCATTTGCCGGCTTCAAGTTCCaggaATGCCGGACCCTG
ACCACTGCCCGCAAAGTCttcgaagggaagggcgtcGCGCATTATGCGGA
CATGTGCTTCCAGAACGTGGACGtcgggggcgggaaagagggggagggag
gggcggaggagtaGGCAGGCTTGATGCCTCCCCCCGAGCCGAAAATGAAC
CTTTCAAATTTCATGAAGGTCCTTGCCAacgagTCCATCGCCgacccctc
cgccgtcaccgCCAAGATTCAAGCACAGATTCGTGAGCGGGAGAAGAACC
ACGAGATGCGGAATctgGCGCGCAAGCTCACCCcagaggaacggagggag
aaaaagcgacGAAAGATCATCAATGACATGAAGAAACagATTGAAGTGGC
GCTTTTTCGGGTTCGACAACTGCACTCCCCGAAAATCCGCTACAAAATTG
ACGTGAACGCCCAGCAGTCGGGGCTTtccgGAGCGGTCCTCACCTGTCGA
GACCCTGCcttcggggaggaggggatgcaCCTGGTTGTGGTCGAGGGGGG
GCCGCGGTCCGTCCGTCGTTTTGTGAAGCTGATGACGCGGCGAATCAAGT
GGAGGGcgcagcaggagggagggggggggcaggagggcgagggagaggag
gaggaggaggaggaggaggaggaggaggacgggggggaggacctggggga
aagggggggggggatctGTGAGCTGGTGTGGCGGGGAGTCGTCGCTAAAC
CCTCATTTGCCGGCTTCAAGTTCCaggaATGCCGGACCCTGACCACTGCC
CGCAAAGTCttcgaagggaagggcgtcGCGCATTATGCGGACATGTGCTT
CCAGAACGTGGACGtcgggggcgggaaagagggggagggaggggcggagg
agtaGGCAGGCTTGATGCCTCCCCCCGAGCCGAAAATGAACCTTTCAAAT
TTCATGAAGGTCCTTGCCAacgagTCCATCGCCgacccctccgccgtcac
cgCCAAGATTCAAGCACAGATTCGTGAGCGGGAGAAGAACCACGAGATGC
GGAATctgGCGCGCAAGCTCACCCcagaggaacggagggagaaaaagcga
cGAAAGATCATCAATGACATGAAGAAACagATTGAAGTGGCGCTTTTTCG
GGTTCGACAACTGCACTCCCCGAAAATCCGCTACAAAATTGACGTGAACG
CCCAGCAGTCGGGGCTTtccgGAGCGGTCCTCACCTGTCGAGACCCTGCc
ttcggggaggaggggatgcaCCTGGTTGTGGTCGAGGGGGGGCCGCGGTC
CGTCCGTCGTTTTGTGAAGCTGATGACGCGGCGAATCAAGTGGAGGGcgc
agcaggagggagggggggggcaggagggcgagggagaggaggaggaggag
gaggaggaggaggaggaggacgggggggaggacctgggggaaaggggggg
ggggatctGTGAGCTGGTGTGGCGGGGAGTCGTCGCTAAACCCTCATTTG
CCGGCTTCAAGTTCCaggaATGCCGGACCCTGACCACTGCCCGCAAAGTC
ttcgaagggaagggcgtcGCGCATTATGCGGACATGTGCTTCCAGAACGT
GGACGtcgggggcgggaaagagggggagggaggggcggaggagtaG back to top
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