rna5863, rna5863 (mRNA) Nannochloropsis gaditana

Overview
Namerna5863
Unique Namerna5863
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2004
Alignment locationCM002466.1:1016962..1017250 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100234g10.1033.mrna
Orig protein idgnl|cribi|Naga_100234g10.1033
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1016962..1017250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100234g10gene5659Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5863rna5863-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24829.1cds5848Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5863 ID=rna5863|Name=rna5863|organism=Nannochloropsis gaditana|type=mRNA|length=2004bp
CCTGTGCCTCATCCTGAAGGGAGTCCTTCGCTTGCACTCGACGTACGTAC
TTGGCAATTTCTCATGCCCAGTCCCTTGGCACAATTGGAACACCTTCGCA
ACTCTGTATCCCCGCACCGTAAGCATGACTTATGACGAGATTTTGCTCCT
GCTATTATACACGGGAAAGTCAGCATGTTTTGGCTTGGAAAGCTTCAGGC
CCCCCCTCGCCACATATCCCGCCCCCTCTTGCCCCCATGCCCTCGCGCTA
CCTCAACCGCAACTTGAGCACGGCATTTCAGGCCACGCGGTCCTATCAAC
AGGTGCTACCGCGCGCCTGCACAGCCCACACGTAAATATGCTTGGCTTCG
AGCTATGCCGTCCAAATTGTACTGAATGTTTTGTCATATTTGCTTCATGG
CTTATTCCTTACTCCTGGTCGCCGCACAGTGCCCCCATTCCCTTTCCCAG
GGCCCTGATCAACATGATGCGCCTTATTACCTTTACTACCTTTTGCATCG
CCTCCACATCGGCTTTCAACCTCTTTATGGCTACTCCGGCCGCGGGTCCA
CGCTTTCACAAAGAGACATTGCGCCCTTTCCGAGAGGGTCGGGCCTTCAA
GGTGATCGCCGGACTCACCAATTTCGACCCGGAATCCGTGGGCCGCATTG
CGCGCGCGGCTGCCCTTGGGGGTGCCACCCACGTGGATCTGGCCGCGGAC
CCCGATTTGGTCGCTCTTGTCAAGAAGGATGCTTCCCGTGTGCGCACGGT
GGTCTCCGCCATCGACCCTGAGAAGTTCGTGCCGTGCGTGGAGGCGGGCG
TGGACATGCTTGAGCTGGGTAATTTCGACGCTTTCTACGCCTCGGGCCTG
CGCTTCTCCTCCCTGGACATTCTGGACCTGACCAGGCGGACCCGCGAGCT
CTGCCCGCGCACGCCCCTCTCCGTCACCATTCCCCACGTGCTTGCAATGG
AGGAGCAGGCGCAGCTGGCGCTCTCCCTCGCCACTCTGGGGGTGGACGTG
ATCCAGACGGAGGGTGCCCCCTCCATTAGCACCATGAGCACCGGCATTCA
GGCCTCGATAGAGAAGGCTGCCCCCGCCCTAGCCTCGACGTATGTGCTCT
CCCGGGCCCTGGCCGGCAGGACGCATGTCATGGCTGCCTCGGGGATGAAC
GAGGTGACCGCGCCCATGGCGCTGGTTTCGGGCGCGCGCGGGGTGGGAGT
CGGGAGCGCCATCACAAAGCTGGACTCGGAGGCTGGGATGGCAACGAAAG
TGCGGGAGATCGTGCGGGCGCTGCAACGAAACAAGGCGCACATGCAGAAC
TAAAGAGGGGATATGAGTGCAGACGAATTTGAGGTATCTTCTCCCTGTTT
TCTTGTGATCGCAGAGAAAAGGTCTTTTCTTACGTGGAGAGGGAGTATTG
TAAGGCTGAGTAGTACGGAAGGTAGGAGTGAGGAGGGAATCACAAAAGGA
CCTGATGGAAAGTCTTGCGGAACCCATCGTGCACGCCCATCATGATTCAC
AGCGGCAAAAACAATAGCCGGCGATGGTTTGAAGAAGGTACAGAGAGTTT
CGGTCCGTGTCATAGAAGCAAAGCCATAATGTTCAGATGAGCCTCGTAAA
AGGACGGTTCTTTTTTCCATTTTGCGTAGCACTGCGTAGCACTTCTTCTT
TTCGAACAGAAAAGCATTTCTACACTCTCTTGACTAATTGTGACGAGTCG
TGTAGCCTCCAGCATGGTCACAGAAAGCGAAAGATGACCTATCCTTGCCC
CGAAGGAGAGGAAATTCACCCATCATGTACGTCGGGCTCTAACCACTGAT
TGACGCCTGCGTGACTGTTTTTCCCTTAACCCCTAAAGACATGAATTCGT
AGCACGCACAGAAAAATATCGATTCATGACATAAAATTTCACCACATACG
ATCCGTTATTAATTTTTCGTAGCCCCTCTGAAACTAAAGAACAGCCATCG
GAGAGAAATGCTTTAAACAATTGACAATTTGGTACAAGAAGCAAGGCCCA
TGCT
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protein sequence of rna5863

>rna5863-protein ID=rna5863-protein|Name=rna5863|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MLTFPCIIAGAKSRHKSCLRCGDTELRRCSNLQAKDSLQDEAQGYVASTL
SLRRQDGPSYRYGLVYLLWRAVCSENERKL
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mRNA from alignment at CM002466.1:1016962..1017250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5863 ID=rna5863|Name=rna5863|organism=Nannochloropsis gaditana|type=mRNA|length=289bp|location=Sequence derived from alignment at CM002466.1:1016962..1017250+ (Nannochloropsis gaditana)
ATGCTGACTTTCCCGTGTATAATAGCAGGAGCAAAATCTCGTCATAAGTC
ATGCTTACGGTGCGGGGATACAGAGTTGCGAAGGTGTTCCAATTGTGCCA
AGGGACTGGGCATGAGAAATTGCCAAGTACGTACGTCGAGTGCAAGCGAA
GGACTCCCTTCAGGATGAGGCACAGGGGTACGTGGCAAGTACTCTCTCTC
TGAGGAGGCAAGACGGCCCGTCATACCGCTATGGCCTCGTGTATTTACTT
TGGAGAGCAGTGTGCAGCGAGAATGAAAGAAAACTATAG
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Coding sequence (CDS) from alignment at CM002466.1:1016962..1017250+

>rna5863 ID=rna5863|Name=rna5863|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002466.1:1016962..1017250+ (Nannochloropsis gaditana)
ATGCTGACTTTCCCGTGTATAATAGCAGGAGCAAAATCTCGTCATAAGTC
ATGCTTACGGTGCGGGGATACAGAGTTGCGAAGGTGTTCCAATTTGCAAG
CGAAGGACTCCCTTCAGGATGAGGCACAGGGGTACGTGGCAAGTACTCTC
TCTCTGAGGAGGCAAGACGGCCCGTCATACCGCTATGGCCTCGTGTATTT
ACTTTGGAGAGCAGTGTGCAGCGAGAATGAAAGAAAACTATAGATGCTGA
CTTTCCCGTGTATAATAGCAGGAGCAAAATCTCGTCATAAGTCATGCTTA
CGGTGCGGGGATACAGAGTTGCGAAGGTGTTCCAATTTGCAAGCGAAGGA
CTCCCTTCAGGATGAGGCACAGGGGTACGTGGCAAGTACTCTCTCTCTGA
GGAGGCAAGACGGCCCGTCATACCGCTATGGCCTCGTGTATTTACTTTGG
AGAGCAGTGTGCAGCGAGAATGAAAGAAAACTATAG
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Synonyms
Publications