EWM24831.1, cds5840 (CDS) Nannochloropsis gaditana

Overview
NameEWM24831.1
Unique Namecds5840
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:1002598..1002650 -
Alignment locationCM002466.1:1002358..1002453 -
Alignment locationCM002466.1:1002067..1002144 -
Alignment locationCM002466.1:1001750..1001963 -
Alignment locationCM002466.1:1001383..1001478 -
Alignment locationCM002466.1:1001095..1001208 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24831.1
Productadp-ribosylation factor
Orig transcript idgnl|cribi|Naga_100234g3.1035.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1002598..1002650 -
CM002466.1supercontigCM002466.1:1002358..1002453 -
CM002466.1supercontigCM002466.1:1002067..1002144 -
CM002466.1supercontigCM002466.1:1001750..1001963 -
CM002466.1supercontigCM002466.1:1001383..1001478 -
CM002466.1supercontigCM002466.1:1001095..1001208 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0007165signal transduction
GO:0015031protein transport
GO:0006886intracellular protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR003579Small_GTPase_Rab_type
IPR006687Small_GTPase_SAR1
IPR024156Small_GTPase_ARF
IPR006689Small_GTPase_ARF/SAR
Homology
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|585106427|gb|EWM24831.1| (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 442.58 bits (1137), Expect = 3.398e-157
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVGSHTYHGIRQDETIQPAAAFRPAAGSLEGPAGGGW 216
            MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVGSHTYHGIRQDETIQPAAAFRPAAGSLEGPAGGGW
Sbjct:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVGSHTYHGIRQDETIQPAAAFRPAAGSLEGPAGGGW 216          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|585106428|gb|EWM24832.1| (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 298.901 bits (764), Expect = 9.230e-101
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVA 149
            MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNV 
Sbjct:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVG 149          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|585106430|gb|EWM24834.1| (adp-ribosylation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 288.886 bits (738), Expect = 7.723e-97
Identity = 145/185 (78.38%), Postives = 158/185 (85.41%), Query Frame = 0
Query:    1 MGQLMTRVLDVLW---GKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVG 182
            MG L++RVLD L    GK+++R+LMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVE V Y+NI FTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADR R  EA++EL  LLSE QL  S +LV+ANKADLP AI V E+A+LLQLD  AKGR WYIQPSCA TGDGLVEGLDWLS KLKE G
Sbjct:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDRAAKGRHWYIQPSCATTGDGLVEGLDWLSCKLKEAG 185          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|242769202|ref|XP_002341722.1| (ADP-ribosylation factor, putative [Talaromyces stipitatus ATCC 10500] >gi|218724918|gb|EED24335.1| ADP-ribosylation factor, putative [Talaromyces stipitatus ATCC 10500])

HSP 1 Score: 238.81 bits (608), Expect = 4.128e-77
Identity = 109/182 (59.89%), Postives = 148/182 (81.32%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVG 182
            MG +++R+LD LWGK++ R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NI FT+WDVGGQD++R LWRHY+++   +IFV+DS DR R+ EAR EL  +L+E +L D++LLV+ANK DLP A+S+ E+ + L L ++ + R WYIQ +CA TGDGL EGL+WL+E L++ G
Sbjct:    1 MGLVVSRLLDRLWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSIAEITQQLGLQSLTR-RAWYIQSTCATTGDGLYEGLEWLAETLRKTG 181          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|212542639|ref|XP_002151474.1| (ADP-ribosylation factor, putative [Talaromyces marneffei ATCC 18224] >gi|212542641|ref|XP_002151475.1| ADP-ribosylation factor, putative [Talaromyces marneffei ATCC 18224] >gi|210066381|gb|EEA20474.1| ADP-ribosylation factor, putative [Talaromyces marneffei ATCC 18224] >gi|210066382|gb|EEA20475.1| ADP-ribosylation factor, putative [Talaromyces marneffei ATCC 18224] >gi|679995264|gb|KFX47728.1| ADP-ribosylation factor [Talaromyces marneffei PM1])

HSP 1 Score: 238.424 bits (607), Expect = 5.137e-77
Identity = 108/182 (59.34%), Postives = 148/182 (81.32%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVG 182
            MG +++++LD LWGK++ R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NI FT+WDVGGQD++R LWRHY+++   +IFV+DS DR R+ EAR EL  +L+E +L D++LLV+ANK DLP A+S+ E+ + L L ++ + R WYIQ +CA TGDGL EGL+WL+E L++ G
Sbjct:    1 MGMVVSKLLDRLWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSIAEITQQLGLQSLTR-RAWYIQSTCATTGDGLYEGLEWLAETLRKTG 181          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|1147822160|ref|XP_020120324.1| (ADP-ribosylation factor [Talaromyces atroroseus] >gi|748552613|dbj|GAM41493.1| ADP-ribosylation factor [Talaromyces cellulolyticus] >gi|1118539970|gb|OKL60203.1| ADP-ribosylation factor [Talaromyces atroroseus])

HSP 1 Score: 237.654 bits (605), Expect = 1.057e-76
Identity = 108/182 (59.34%), Postives = 148/182 (81.32%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVG 182
            MG +++++LD LWGK++ R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NI FT+WDVGGQD++R LWRHY+++   +IFV+DS DR R+ EAR EL  +L+E +L D++LLV+ANK DLP A+S+ E+ + L L ++ + R WYIQ +CA TGDGL EGL+WL+E L++ G
Sbjct:    1 MGLVVSKLLDRLWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSIAEITQQLGLQSLTR-RAWYIQSTCATTGDGLYEGLEWLAETLRKTG 181          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|669160266|ref|XP_008615695.1| (ADP-ribosylation factor 1 [Saprolegnia diclina VS20] >gi|530732715|gb|EQC30957.1| ADP-ribosylation factor 1 [Saprolegnia diclina VS20])

HSP 1 Score: 237.269 bits (604), Expect = 1.388e-76
Identity = 112/180 (62.22%), Postives = 140/180 (77.78%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKE 180
            MG L +RV+D L+ K+D R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE +EY+NI+FT+WDVGGQD++R LWRHYY +   LIFV+DS DR R+ +AR ELH +L++ +L D+I LV+ANK DLP ++S  EM   L L     GRPWYIQ  CA TGDGL EGLDWLS  LK+
Sbjct:    1 MGMLFSRVMDRLFSKQDVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETLEYKNINFTVWDVGGQDKIRPLWRHYYDNTRGLIFVVDSNDRDRIDQARDELHRMLAQDELRDAITLVFANKQDLPNSMSAAEMTEKLGLRTF--GRPWYIQACCATTGDGLYEGLDWLSATLKK 178          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|1111710701|gb|OJI97368.1| (hypothetical protein ASPVEDRAFT_49389 [Aspergillus versicolor CBS 583.65] >gi|1111895501|gb|OJJ63565.1| hypothetical protein ASPSYDRAFT_53235 [Aspergillus sydowii CBS 593.65])

HSP 1 Score: 237.269 bits (604), Expect = 1.550e-76
Identity = 109/182 (59.89%), Postives = 146/182 (80.22%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVG 182
            MG  ++R+ D LWGK++ R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NI FT+WDVGGQD++R LWRHY+++   +IFV+DS DR R+ EAR EL  +L+E +L D++LLV+ANK DLP A+S  E+ + L L ++ + RPWYIQ +CA TGDGL EGL+WL+E L++ G
Sbjct:    1 MGIAISRLFDRLWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTR-RPWYIQSTCATTGDGLYEGLEWLAETLRKTG 181          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|972234267|emb|CEN62826.1| (Putative ADP-ribosylation factor (Broad) [Aspergillus calidoustus])

HSP 1 Score: 237.269 bits (604), Expect = 1.674e-76
Identity = 109/182 (59.89%), Postives = 146/182 (80.22%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVG 182
            MG  ++R+ D LWGK++ R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NI FT+WDVGGQD++R LWRHY+++   +IFV+DS DR R+ EAR EL  +L+E +L D++LLV+ANK DLP A+S  E+ + L L ++ + RPWYIQ +CA TGDGL EGL+WL+E L++ G
Sbjct:    1 MGIAISRLFDRLWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRIIEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTR-RPWYIQSTCATTGDGLYEGLEWLAETLRKTG 181          
BLAST of EWM24831.1 vs. NCBI_GenBank
Match: gi|209876175|ref|XP_002139530.1| (ADP-ribosylation factor 1 [Cryptosporidium muris RN66] >gi|209555136|gb|EEA05181.1| ADP-ribosylation factor 1, putative [Cryptosporidium muris RN66] >gi|1098430061|gb|OII77910.1| ADP-ribosylation factor 1 [Cryptosporidium andersoni])

HSP 1 Score: 237.269 bits (604), Expect = 1.787e-76
Identity = 112/183 (61.20%), Postives = 142/183 (77.60%), Query Frame = 0
Query:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLKEVGS 183
            MG  +T++   L+GK+D R+LM+GLDAAGKTTILY+L+LGE V +IPTIGFNVE VEY+NISFT+WDVGGQD++R LWRHYY + D LIFV+DS DR R+++AR EL  +LSE +L D+ LLV+ANK DLP A+S  ++   LQL N+ + R WYIQ +CA +GDGL EGLDWLS  L    S
Sbjct:    1 MGLALTKIWRNLFGKKDMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERINDARDELARMLSEDELRDAALLVFANKQDLPNAMSATDVTEKLQLSNI-RNRHWYIQSTCATSGDGLYEGLDWLSRTLASKSS 182          
The following BLAST results are available for this feature:
BLAST of EWM24831.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106427|gb|EWM24831.1|3.398e-157100.00adp-ribosylation factor [Nannochloropsis gaditana][more]
gi|585106428|gb|EWM24832.1|9.230e-10199.33adp-ribosylation factor [Nannochloropsis gaditana][more]
gi|585106430|gb|EWM24834.1|7.723e-9778.38adp-ribosylation factor 1 [Nannochloropsis gaditan... [more]
gi|242769202|ref|XP_002341722.1|4.128e-7759.89ADP-ribosylation factor, putative [Talaromyces sti... [more]
gi|212542639|ref|XP_002151474.1|5.137e-7759.34ADP-ribosylation factor, putative [Talaromyces mar... [more]
gi|1147822160|ref|XP_020120324.1|1.057e-7659.34ADP-ribosylation factor [Talaromyces atroroseus] >... [more]
gi|669160266|ref|XP_008615695.1|1.388e-7662.22ADP-ribosylation factor 1 [Saprolegnia diclina VS2... [more]
gi|1111710701|gb|OJI97368.1|1.550e-7659.89hypothetical protein ASPVEDRAFT_49389 [Aspergillus... [more]
gi|972234267|emb|CEN62826.1|1.674e-7659.89Putative ADP-ribosylation factor (Broad) [Aspergil... [more]
gi|209876175|ref|XP_002139530.1|1.787e-7661.20ADP-ribosylation factor 1 [Cryptosporidium muris R... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5855rna5855Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications