EWM24830.1, cds5839 (CDS) Nannochloropsis gaditana

Overview
NameEWM24830.1
Unique Namecds5839
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:998291..998461 +
Alignment locationCM002466.1:998622..1000358 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24830.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100234g2.1034.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:998291..998461 +
CM002466.1supercontigCM002466.1:998622..1000358 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24830.1 vs. NCBI_GenBank
Match: gi|585106426|gb|EWM24830.1| (hypothetical protein Naga_100234g2 [Nannochloropsis gaditana])

HSP 1 Score: 1209.51 bits (3128), Expect = 0.000e+0
Identity = 635/635 (100.00%), Postives = 635/635 (100.00%), Query Frame = 0 
Query:    1 MKFYRKRTAALVFIALLGVILVVGARDVKHTATEPGHEIKTDVSLVDGKPVEITDIQKSSLKKSTEQVNEDNEEIKKGDEGAEEEEEDEAEEEEEENPLTEENKKEAVQKNDENKENVSEVGVIGEEQEEMKEGKKKEIEADAEAGEEEEEEEEEEEEDDGVEMESEGGEDEDEGIEKEEDEEEVVEMKGEVAKEGKIEEEDKDHGEGIVEDEKEEEKGEEGEEDELIAGEKGEEEKDEEEEEEEEEEEEEEGEEEEDNGEEDEGIDEEVEEEVETEGEEDEEDEEDEGEEDKEIAASGEKKKSNGSSMDASAPDVKADGDQLPVSEAPEDAKEEEWLDALASTVEDVIEEEEKEANAGWQGLRGSHRSYDDTDDQDSSLFFPLPGLLSSLFPPAAPGSMDMEDGTEPTLVVLSPPSSSDPTTASTSPFAAMNALVNSFFNSFPAPPPPPSFPPGVPPPPPGTTVVVETLRDETGKTTESFYVVDAESGEREKVGETVAPAEEASGTETPEGGFMKSVYSYVVPEEGEDAAQPLQLKSAPPAPSAGGSQTGRGDGTHHVLLVLVGVGVGAAFVALALAFFAMRRGRMEGEDETAGSLGRRRQQQEPLLYLPPGGEEERVVRAHVVKADAPEPLEV 635
            MKFYRKRTAALVFIALLGVILVVGARDVKHTATEPGHEIKTDVSLVDGKPVEITDIQKSSLKKSTEQVNEDNEEIKKGDEGAEEEEEDEAEEEEEENPLTEENKKEAVQKNDENKENVSEVGVIGEEQEEMKEGKKKEIEADAEAGEEEEEEEEEEEEDDGVEMESEGGEDEDEGIEKEEDEEEVVEMKGEVAKEGKIEEEDKDHGEGIVEDEKEEEKGEEGEEDELIAGEKGEEEKDEEEEEEEEEEEEEEGEEEEDNGEEDEGIDEEVEEEVETEGEEDEEDEEDEGEEDKEIAASGEKKKSNGSSMDASAPDVKADGDQLPVSEAPEDAKEEEWLDALASTVEDVIEEEEKEANAGWQGLRGSHRSYDDTDDQDSSLFFPLPGLLSSLFPPAAPGSMDMEDGTEPTLVVLSPPSSSDPTTASTSPFAAMNALVNSFFNSFPAPPPPPSFPPGVPPPPPGTTVVVETLRDETGKTTESFYVVDAESGEREKVGETVAPAEEASGTETPEGGFMKSVYSYVVPEEGEDAAQPLQLKSAPPAPSAGGSQTGRGDGTHHVLLVLVGVGVGAAFVALALAFFAMRRGRMEGEDETAGSLGRRRQQQEPLLYLPPGGEEERVVRAHVVKADAPEPLEV
Sbjct:    1 MKFYRKRTAALVFIALLGVILVVGARDVKHTATEPGHEIKTDVSLVDGKPVEITDIQKSSLKKSTEQVNEDNEEIKKGDEGAEEEEEDEAEEEEEENPLTEENKKEAVQKNDENKENVSEVGVIGEEQEEMKEGKKKEIEADAEAGEEEEEEEEEEEEDDGVEMESEGGEDEDEGIEKEEDEEEVVEMKGEVAKEGKIEEEDKDHGEGIVEDEKEEEKGEEGEEDELIAGEKGEEEKDEEEEEEEEEEEEEEGEEEEDNGEEDEGIDEEVEEEVETEGEEDEEDEEDEGEEDKEIAASGEKKKSNGSSMDASAPDVKADGDQLPVSEAPEDAKEEEWLDALASTVEDVIEEEEKEANAGWQGLRGSHRSYDDTDDQDSSLFFPLPGLLSSLFPPAAPGSMDMEDGTEPTLVVLSPPSSSDPTTASTSPFAAMNALVNSFFNSFPAPPPPPSFPPGVPPPPPGTTVVVETLRDETGKTTESFYVVDAESGEREKVGETVAPAEEASGTETPEGGFMKSVYSYVVPEEGEDAAQPLQLKSAPPAPSAGGSQTGRGDGTHHVLLVLVGVGVGAAFVALALAFFAMRRGRMEGEDETAGSLGRRRQQQEPLLYLPPGGEEERVVRAHVVKADAPEPLEV 635
The following BLAST results are available for this feature:
BLAST of EWM24830.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106426|gb|EWM24830.1|0.000e+0100.00hypothetical protein Naga_100234g2 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5854rna5854Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications