|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100234g2.1034.mrna |
| Orig protein id | gnl|cribi|Naga_100234g2.1034 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:998197..1000751 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5854 ID=rna5854|Name=rna5854|organism=Nannochloropsis gaditana|type=mRNA|length=912bp
ATGAGAGAGGTGGCGGTGCAGATCGAAACGCTGCCCCCTCCGATGCAGGA
AAAGAGCTACAAGCTCATGAACAGGACTGTGGTCAACCTGCAAGACAAGC
TGGGCTTTATCTTGGCATCGGGTGTGTCGTGGGAAACGATCTTAAGGTTG
ATTCAAGCCGAGCTCCGAGCGTTCCGAGAGGAGGGTATCGACCCTTTGTC
CGAGTCTGTGGCGCGGGAATTGTTTTTTGTGGCCGCCAGCAAGGTCTTCC
CTGACCTGCCCCTGGATGAATGGAACCGAAACGTCGAGTCCCTGAGCGAC
CGCACCCGCAAACTTTGGTGGGAGAGTCAAATGAAGATGGACGACTTGTT
GCCGCCGTCCTCTTCCTACCCCTCCTCCACTCTCGAGGGCCCACCCTCTC
TCCCGTCCGCCATGCGTCTCAGGTCCCCGTCTTCCCTCTACTCCTCCTAC
TCCTCCTCAAACCGCACCCTTGCCGCTGCTGCCACAGGCAATGACCTGAA
AAGATGGTTGGAGAGTCTGGAGGCAGCCTTGATTCTTGCCGGGGTGGGCA
TTGTCGATGACAGCGGCAAAACTCCGACCGCCGCGCTGAGGGAAGTAGGG
GAAAATTTGGAGCGATTGAAACAGCAATCGGAGGACCTCCTTCTCTTGAT
TGAGGACGAAATCCGTTACATCGCTAAGGGTGGCAAGCCGGAGACATCTA
TAAAGCACCTGGGGGAGAGCGTCAAAAGGTACGCGAGCGAATACACGCGC
CTCGTTCCCGAGGAGTGGAGAAAATCACTCAACCTTCCTCCAGCTTCTCC
ACTACCTCCTCCTCCGTACAAAAAAAGGGAGGAGATCGTGCATGAAATCA
TAGAAATAGATGAAGAGGAGTTAGAGGCTATGGTAGGCGATGAGGAGGGA
GACTGGTTTTAG back to topprotein sequence of rna5854 >rna5854-protein ID=rna5854-protein|Name=rna5854|organism=Nannochloropsis gaditana|type=polypeptide|length=635bp
MKFYRKRTAALVFIALLGVILVVGARDVKHTATEPGHEIKTDVSLVDGKP
VEITDIQKSSLKKSTEQVNEDNEEIKKGDEGAEEEEEDEAEEEEEENPLT
EENKKEAVQKNDENKENVSEVGVIGEEQEEMKEGKKKEIEADAEAGEEEE
EEEEEEEEDDGVEMESEGGEDEDEGIEKEEDEEEVVEMKGEVAKEGKIEE
EDKDHGEGIVEDEKEEEKGEEGEEDELIAGEKGEEEKDEEEEEEEEEEEE
EEGEEEEDNGEEDEGIDEEVEEEVETEGEEDEEDEEDEGEEDKEIAASGE
KKKSNGSSMDASAPDVKADGDQLPVSEAPEDAKEEEWLDALASTVEDVIE
EEEKEANAGWQGLRGSHRSYDDTDDQDSSLFFPLPGLLSSLFPPAAPGSM
DMEDGTEPTLVVLSPPSSSDPTTASTSPFAAMNALVNSFFNSFPAPPPPP
SFPPGVPPPPPGTTVVVETLRDETGKTTESFYVVDAESGEREKVGETVAP
AEEASGTETPEGGFMKSVYSYVVPEEGEDAAQPLQLKSAPPAPSAGGSQT
GRGDGTHHVLLVLVGVGVGAAFVALALAFFAMRRGRMEGEDETAGSLGRR
RQQQEPLLYLPPGGEEERVVRAHVVKADAPEPLEV back to topmRNA from alignment at CM002466.1:998197..1000751+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5854 ID=rna5854|Name=rna5854|organism=Nannochloropsis gaditana|type=mRNA|length=2555bp|location=Sequence derived from alignment at CM002466.1:998197..1000751+ (Nannochloropsis gaditana)
TGTCGTAAGGATCGCAACTCGCCTGCGTTTTCATTTCTACATCTTCACGC
ATAAGACTGATTcttctttctcatcttcgATTCAATGCATATAGATGAAG
TTCTACAGGAAGCGCACAGCCGCTTTAGTGTTTATCGCCCTTCTTGGCGT
GATCCTGGTTGTCGGAGCGAGGGATGTGAAGCATACGGCAACAGAACCAG
GCCACGAGATTAAGACTGATGTCTCTCTTGTGGATGGCAAGCCAGTGGAA
ATCACTGATATACAGGTGAGAATCGTCGTAATAATAAGACTAGATGTGTT
TGGTGGAGTGTGCGCGTGTTTGTAGGTAGAGGCCATGTAGCTGGACACCC
TGGCCTGGTAAATCCTAGTGCACTTCAATTTTCGAGTAGGACCACTCACT
ATCTCACTTCACCATACTTTTCTAGAAATCATCTCTGAAAAAATCCACGG
AGCAAGTGAATGAAGACAATGAAGAAATTAAGAAGGGAGACGAAGGTgct
gaggaagaagaggaggatgaagctgaagaggaagaagaggagaacccgct
gacggaggaaaacaaaaaagAAGCTGTGCAAAAAAATGATGAAAACAAAG
AGAACGTTTCAGAGGTAGGCGTGATtggagaggagcaggaagagatgaaa
gaggggaaaaagaaggagataGAGGCAGATGcagaagcaggggaggaaga
agaggaagaggaagaggaagaggaagaagacgatggggtggagatggaaa
gcgagggaggagaagatgaggatgaggggatagaaaaggaagaggatgag
gaggaggtggtggagatgaagggggaggtggcaaaagaaggaaagattga
agaggaggacaaggaccaCGGGGAGGGTATAGttgaggacgaaaaggagg
aggagaaaggggaggaaggagaggaggacgagttGATCGCgggtgagaag
ggggaggaggagaaggacgaggaggaggaggaggaagaggaggaggagga
ggaggaggagggagaagaggaagaggacaacggggaggaagatgaaggga
ttgatgaggaggtggaggaggaggtggagacagaaggggaggaggacgag
gaggacgaggaggacgagggcgaggaggacaaggagatcGCGGCCTctgg
agagaaaaaaaagtcgAATGGTAGCTCGATGGATGCCTCCGCACCTGATG
TGAAGGCCGATGGTGACCAACTCCCTGTTTCGGAGGCGCCTGaagacgcg
aaggaggaggaatggctGGACGCCCTCGCCAGCACCGTAGAAGACGTcat
cgaagaggaggagaaggaggcgaacGCGGGCTGGCAGGGCCTGCGAGGCT
CCCACCGGAGCTACGACGACACCGACGACCAagattcctccctttttttc
cccctccccgggctcctctcctctctctttcctcccgcggCCCCGGGCTC
GATGGATATGGAGGACGGCACGGAGCCTACCCTCGTGgtcctgtcccctc
cctcctcctcagaccccaccactgcctccacctccccctttgCCGCCATG
AACGCCTTGGTCAACAGCTTCTTCaactccttccccgcccctcccccccc
tccctcctttccccccggcgtccctccccccccgcctgggACCACCGTGG
TCGTGGAGACCCTCCGTGACGAGACGGGCAAGACCACTGAGTCCTTTTAC
GTGGTCGACGCAGAgagcggggagagggagaaggtgggggagaCCGTGGC
CCCAGCGGAGGAGGCTTCTGGCACAGAgacgccggagggaggattcATGA
AGAGCGTGTACAGCTATGTGGtcccggaggagggggaggacgccgctCAG
CCGCTACAGTTGAAGAgcgcccctcctgctccctcggCCGGAGGCTCCCA
GACAGGGCGAGGCGATGGGAcgcaccacgtcctcctggtgctggtggggg
tgggggtgggggctgCCTTTGtggccctggccctggcctTCTTTGCCatg
aggcgggggaggatggagggggaggatgagacgGCAGGGAGCTTGGGCCG
ACggcgacagcagcaggagccCCTCTTGTACCTTCCTCCggggggcgaag
aggagagggtggtaCGGGCGCACGTGGTGAAAGCGGATGCCCCAGAGCCT
CTGGAGGTTTAATAACGGTACGAAATTTGGGCGTGATATCGAATGAACGA
CTTGCAATTGACGCAAAAAAGCGGATTGGtagcggagggagaaggtatCG
GGGTAGAGGGatagagagaagggggaggagcgcgcCGATAGCGCGGTGGA
AGCCAGGGGAGGGCCTTCGAAAGGGATCCCAGAGAGAATTGAGAGCGACG
GCCACATCCATCGTGTTACGCCTGTCTCGAATCTTGTCACCTTAAGTCAG
GACAGAGGGCGTGAATGGCACAAGGCACGCAGAAGTGGTCGGCGAGAGAC
ACGGTCTCGGAGCCcccatcccgtcctccgccctgaAGGCGCAAAGAAAA
GCAACAATCGACCCTCCTCGCGATGTTCTGGAGGGGCCGTGCCCTTCAAC
ATGAA back to topCoding sequence (CDS) from alignment at CM002466.1:998197..1000751+ >rna5854 ID=rna5854|Name=rna5854|organism=Nannochloropsis gaditana|type=CDS|length=3816bp|location=Sequence derived from alignment at CM002466.1:998197..1000751+ (Nannochloropsis gaditana)
ATGAAGTTCTACAGGAAGCGCACAGCCGCTTTAGTGTTTATCGCCCTTCT
TGGCGTGATCCTGGTTGTCGGAGCGAGGGATGTGAAGCATACGGCAACAG
AACCAGGCCACGAGATTAAGACTGATGTCTCTCTTGTGGATGGCAAGCCA
GTGGAAATCACTGATATACAGAAATCATCTCTGAAAAAATCCACGGAGCA
AGTGAATGAAGACAATGAAGAAATTAAGAAGGGAGACGAAGGTgctgagg
aagaagaggaggatgaagctgaagaggaagaagaggagaacccgctgacg
gaggaaaacaaaaaagAAGCTGTGCAAAAAAATGATGAAAACAAAGAGAA
CGTTTCAGAGGTAGGCGTGATtggagaggagcaggaagagatgaaagagg
ggaaaaagaaggagataGAGGCAGATGcagaagcaggggaggaagaagag
gaagaggaagaggaagaggaagaagacgatggggtggagatggaaagcga
gggaggagaagatgaggatgaggggatagaaaaggaagaggatgaggagg
aggtggtggagatgaagggggaggtggcaaaagaaggaaagattgaagag
gaggacaaggaccaCGGGGAGGGTATAGttgaggacgaaaaggaggagga
gaaaggggaggaaggagaggaggacgagttGATCGCgggtgagaaggggg
aggaggagaaggacgaggaggaggaggaggaagaggaggaggaggaggag
gaggagggagaagaggaagaggacaacggggaggaagatgaagggattga
tgaggaggtggaggaggaggtggagacagaaggggaggaggacgaggagg
acgaggaggacgagggcgaggaggacaaggagatcGCGGCCTctggagag
aaaaaaaagtcgAATGGTAGCTCGATGGATGCCTCCGCACCTGATGTGAA
GGCCGATGGTGACCAACTCCCTGTTTCGGAGGCGCCTGaagacgcgaagg
aggaggaatggctGGACGCCCTCGCCAGCACCGTAGAAGACGTcatcgaa
gaggaggagaaggaggcgaacGCGGGCTGGCAGGGCCTGCGAGGCTCCCA
CCGGAGCTACGACGACACCGACGACCAagattcctccctttttttccccc
tccccgggctcctctcctctctctttcctcccgcggCCCCGGGCTCGATG
GATATGGAGGACGGCACGGAGCCTACCCTCGTGgtcctgtcccctccctc
ctcctcagaccccaccactgcctccacctccccctttgCCGCCATGAACG
CCTTGGTCAACAGCTTCTTCaactccttccccgcccctcccccccctccc
tcctttccccccggcgtccctccccccccgcctgggACCACCGTGGTCGT
GGAGACCCTCCGTGACGAGACGGGCAAGACCACTGAGTCCTTTTACGTGG
TCGACGCAGAgagcggggagagggagaaggtgggggagaCCGTGGCCCCA
GCGGAGGAGGCTTCTGGCACAGAgacgccggagggaggattcATGAAGAG
CGTGTACAGCTATGTGGtcccggaggagggggaggacgccgctCAGCCGC
TACAGTTGAAGAgcgcccctcctgctccctcggCCGGAGGCTCCCAGACA
GGGCGAGGCGATGGGAcgcaccacgtcctcctggtgctggtgggggtggg
ggtgggggctgCCTTTGtggccctggccctggcctTCTTTGCCatgaggc
gggggaggatggagggggaggatgagacgGCAGGGAGCTTGGGCCGACgg
cgacagcagcaggagccCCTCTTGTACCTTCCTCCggggggcgaagagga
gagggtggtaCGGGCGCACGTGGTGAAAGCGGATGCCCCAGAGCCTCTGG
AGGTTTAAATGAAGTTCTACAGGAAGCGCACAGCCGCTTTAGTGTTTATC
GCCCTTCTTGGCGTGATCCTGGTTGTCGGAGCGAGGGATGTGAAGCATAC
GGCAACAGAACCAGGCCACGAGATTAAGACTGATGTCTCTCTTGTGGATG
GCAAGCCAGTGGAAATCACTGATATACAGAAATCATCTCTGAAAAAATCC
ACGGAGCAAGTGAATGAAGACAATGAAGAAATTAAGAAGGGAGACGAAGG
Tgctgaggaagaagaggaggatgaagctgaagaggaagaagaggagaacc
cgctgacggaggaaaacaaaaaagAAGCTGTGCAAAAAAATGATGAAAAC
AAAGAGAACGTTTCAGAGGTAGGCGTGATtggagaggagcaggaagagat
gaaagaggggaaaaagaaggagataGAGGCAGATGcagaagcaggggagg
aagaagaggaagaggaagaggaagaggaagaagacgatggggtggagatg
gaaagcgagggaggagaagatgaggatgaggggatagaaaaggaagagga
tgaggaggaggtggtggagatgaagggggaggtggcaaaagaaggaaaga
ttgaagaggaggacaaggaccaCGGGGAGGGTATAGttgaggacgaaaag
gaggaggagaaaggggaggaaggagaggaggacgagttGATCGCgggtga
gaagggggaggaggagaaggacgaggaggaggaggaggaagaggaggagg
aggaggaggaggagggagaagaggaagaggacaacggggaggaagatgaa
gggattgatgaggaggtggaggaggaggtggagacagaaggggaggagga
cgaggaggacgaggaggacgagggcgaggaggacaaggagatcGCGGCCT
ctggagagaaaaaaaagtcgAATGGTAGCTCGATGGATGCCTCCGCACCT
GATGTGAAGGCCGATGGTGACCAACTCCCTGTTTCGGAGGCGCCTGaaga
cgcgaaggaggaggaatggctGGACGCCCTCGCCAGCACCGTAGAAGACG
TcatcgaagaggaggagaaggaggcgaacGCGGGCTGGCAGGGCCTGCGA
GGCTCCCACCGGAGCTACGACGACACCGACGACCAagattcctccctttt
tttccccctccccgggctcctctcctctctctttcctcccgcggCCCCGG
GCTCGATGGATATGGAGGACGGCACGGAGCCTACCCTCGTGgtcctgtcc
cctccctcctcctcagaccccaccactgcctccacctccccctttgCCGC
CATGAACGCCTTGGTCAACAGCTTCTTCaactccttccccgcccctcccc
cccctccctcctttccccccggcgtccctccccccccgcctgggACCACC
GTGGTCGTGGAGACCCTCCGTGACGAGACGGGCAAGACCACTGAGTCCTT
TTACGTGGTCGACGCAGAgagcggggagagggagaaggtgggggagaCCG
TGGCCCCAGCGGAGGAGGCTTCTGGCACAGAgacgccggagggaggattc
ATGAAGAGCGTGTACAGCTATGTGGtcccggaggagggggaggacgccgc
tCAGCCGCTACAGTTGAAGAgcgcccctcctgctccctcggCCGGAGGCT
CCCAGACAGGGCGAGGCGATGGGAcgcaccacgtcctcctggtgctggtg
ggggtgggggtgggggctgCCTTTGtggccctggccctggcctTCTTTGC
CatgaggcgggggaggatggagggggaggatgagacgGCAGGGAGCTTGG
GCCGACggcgacagcagcaggagccCCTCTTGTACCTTCCTCCggggggc
gaagaggagagggtggtaCGGGCGCACGTGGTGAAAGCGGATGCCCCAGA
GCCTCTGGAGGTTTAA back to top
|