rna5838, rna5838 (mRNA) Nannochloropsis gaditana

Overview
Namerna5838
Unique Namerna5838
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1569
Alignment locationCM002466.1:962569..964159 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100882g3.6795.mrna
Orig protein idgnl|cribi|Naga_100882g3.6795
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:962569..964159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100882g3gene5636Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5838rna5838-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24850.1cds5823Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5838 ID=rna5838|Name=rna5838|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp
ACGGACTCACCACTGCTTATTCGAATGTTGCGAAAAACTGATCAAGGATG
CCTCTTCTGCCTCATTCCTCCTCTTGTATGCACAAATGCGGACGGAATGG
CAATAGCAGGGGGCGACGCGATGGCGATAGCGGAGTTTTAGGAAGTCAAG
CCATGGGGTGGTATGTCATGAAAATATATCCAAAAGACCCAGCATTGTTG
CGTGAGAACATCCATCGACTTTCCCGTTGGCGTATGAGCGGATGTGTGGG
AGTATGTGCGGCTTCCTTCTGACGTTTCGCACGGCCTCGTTGAACCCTGT
CGTTTTATTTTAATCTCAGCTCTTAGTGTCGACATTCCCGCGCACTGACT
TCCCATGGCCTACAGGTGGTCTCCATGCACAAGCATTAACCAATGCCTTC
ATTTCATCGCTTTGTCTCTTTTCTACTTGTCTTGTTGCGGCTACTTCTCG
CGCCTGCTTTCGCCCCCGCTCCGCCAACCTCCTCCCCCTCTAACCATGCC
AAGGCCATCGTCAAAACGGCATCCAGGAATAATAAGCAGCTTATACAGCC
TATCCGGGCTGTAACGCAGACTGGCACACTTGCTGAGACGGTCGGCGGCG
GTTGGGCAGGTTGGGAGTGTCACTTTTCATTCTCCTCCGGCCTGGTATTG
CCAGTCCCCGCGGACGACTTGCCCGAAGCCCTTCGCGAGTGGGAAGTTGC
GGTGTGGGGGTGGGAGGGTTTCGCGTACGACGCTGTCAGGGAGGATGAAG
GGACTGTGGACATTGAGCGAAGAGCAGCACGGTTCATGGTGGAGGCCGGC
TGTGGCTGTGAGAACGTAGGGAAGCAGAAAAGCCACCAGCGACTCCAGCC
CTTGGCCTGGGCCCGCGGTGGTCTCGGATACGTGACGGCCGACCGGCTCA
CAGACTCCCTCCTTCGCCTGGAAGCAGCCCTGTCCTCCCCCCCTTCCTCC
TTCCCCTCCTCTACCCCTTCGGCATCCGCACCGGCCGCCAGACGCGCCCG
GGTCATCCTCGACCTTCGGTGCCCCCCTGTCCCTCCTTCAACCCCCATGT
CGAGCCCCCAAGGCGCCTTTGTGTGCTCTGTCCGAGACCCTGTCCGCCTC
TACCTCGAGCGACGCTTCACGTCAGCCTTGCCGGCCACGGATCCCTTCAA
AGCTGCCATTGACCAGACCAGCATCTCCCGGCATGTGGGCGTCCCTTGCT
TTGGAGAGCCAGAGAGAGGGGCAGCGGGAAGAGAATGGGGAGGGAGTGGG
GTGTGGGTGAGGTGGAGGGAAGACAGAGAAGTTTTGGAGGTAGGGTGGCG
GCCCGAGGTGGCGAGGGGGCAGGAAGGTGAAGCAGGGGTAGAGGAAAAGA
AGGGGATGGCGTGGCGCATTAGGCTAGGGCAAGAGGAATGCAAGGTAGTT
GACTGTGAATGGGTCGAGAACGTGACAGGATAGGGTGGGCGACTGCATGC
TGGGAAAAGAAAACAAGCAAGGACGTGGCGAATCACAAGAAAAATATATA
TGTAGCAGCTAGTCACTTTCAAGAAAGACGGATGGAGCTTCATTTTTAAT
CAAGATAACGTTCTACTGA
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protein sequence of rna5838

>rna5838-protein ID=rna5838-protein|Name=rna5838|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MPGPVPPQGEDESEKAMETAALLTAAAAEQWEASLARLKNEINRCDIETK
TFLAPILKHPSAQQVLVSFLSDPSKSFQDWIWEPRAHEVLNRFRSSLSQQ
TSQGTVELFFPPHRRPPPPSSLYLVPHIPPLYLSGCFIVHLFSHALILWR
KLSYSVVSVLYPFLSAALAFPPSIPPPLLPSFPPSLL
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mRNA from alignment at CM002466.1:962569..964159+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5838 ID=rna5838|Name=rna5838|organism=Nannochloropsis gaditana|type=mRNA|length=1591bp|location=Sequence derived from alignment at CM002466.1:962569..964159+ (Nannochloropsis gaditana)
AGCCGCAACAAGACAAGTAGAAAAGAGACAAAGCGATGAAATGAAGGCAT
TGGTTAATGCTTGTGCATGGAGACCACCTGTAGGCCATGGGAAGTCAGTG
CGCGGGAATGTCGACACTAAGAGCTGAGATTAAAATAAAACGACAGGGTT
CAACGAGGCCGTGCGAAACGTCAGAAGGAAGCCGCACATACTCCCACACA
TCCGCTCATACGCCAACGGGAAAGTCGATGGATGTTCTCACGCAACAATG
CTGGGTCTTTTGGATATATTTTCATGACATACCACCCCATGGCTTGACTT
CCTAAAACTCCGCTATCGCCATCGCGTCGCCCCCTGCTATTGCCATTCCG
TCCGCATTTGTGCAtacaagaggaggaatgaggcAGAAGAGGCATCCTTG
ATCAGTTTTTCGCAACATTCGAATAAGCAGTGGTGAGTCCGTGGCAACTC
GTTTTTCAGCTGAAATCAGCGCGGGTAGCAAAATTTGTACCCTCCACTTG
ACGTTATCGCTTCCTGCCAAACCCTGTCCCTCAAGCCCAGGAAGGGATTT
GGAACTGCATGCGAAAATCTCTCAACGTCTGCTTTTCTGCACAATTAATG
CGTAGGTCTGGAGATATGCCAGGTCCTGTCCCCCCTCAAGGTGAAGACGA
AAGTGAAAAGGCAATGGAGACGGCCGCGTTGCTGACAGCTGCAGCAGCGG
AGCAATGGGAGGCTAGCTTAGCACGCTTAAAAAATGAAATTAATCGATGC
GATATCGAAACAAAGGTAGGTGTATTGGAGATATTTTTCTAATTTAAATG
CAGTCGCAAGACAGCAGGGCAAACATGATGGGGAAACTCACTACAGTTTC
AAGCTAGAGTATCTTGGTAGGGGGAGGCGCATGTGCGCGATGGAAGCCAT
TCCTTTGTTCCCAACCGAATGCCCCAGTAATATTTTTCGCCGTAAATCAT
CCATGTTGCAGACCTTTCTGGCGCCAATTTTGAAACATCCTTCGGCGCAG
CAGGTCTTGGTCTCGTTTTTGTCTGATCCCAGCAAGTAAGTAcgtgagga
aaggggggagatcggacggaaagaggaaggaaataaTAGAGAAAAACTGC
AGCGAAAGAGGAGTCACGCAGTCATTAATAACGCAGCACGGATCTGCTCT
cgtcttccaccgcccccatccACTTTTAcccttacctcctcctcgactaa
accttccctccccccctcactctctctcctcctcggacgcCTGGTCCGTC
CAGGTCGTTTCAAGACTGGATCTGGGAGCCACGGGCGCACGAAGTCCTCA
ATCGCTTCCGGAGCTCCCTCTCACAGCAAACCTCGCAAGGTACCGTCgag
cttttcttccctccgcatcgtcgccctcctcccccctcctccctctacct
cgTTCCTCACATCCCTCCTCTGTACCTCTCCGGATGCTTTATCGTGCACC
TCTTTTCGCATGCCCTCATTCTCTGGCGAAAGCTTTCTTATAGCGTCGTG
AGTGTCCTCTACCCTTTTCTCTcggcggccctggcctttcctccctccat
cccgcccccactccttccctccttccctccttccctccttc
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Coding sequence (CDS) from alignment at CM002466.1:962569..964159+

>rna5838 ID=rna5838|Name=rna5838|organism=Nannochloropsis gaditana|type=CDS|length=1686bp|location=Sequence derived from alignment at CM002466.1:962569..964159+ (Nannochloropsis gaditana)
ATGCCAGGTCCTGTCCCCCCTCAAGGTGAAGACGAAAGTGAAAAGGCAAT
GGAGACGGCCGCGTTGCTGACAGCTGCAGCAGCGGAGCAATGGGAGGCTA
GCTTAGCACGCTTAAAAAATGAAATTAATCGATGCGATATCGAAACAAAG
ACCTTTCTGGCGCCAATTTTGAAACATCCTTCGGCGCAGCAGGTCTTGGT
CTCGTTTTTGTCTGATCCCAGCAAGTCGTTTCAAGACTGGATCTGGGAGC
CACGGGCGCACGAAGTCCTCAATCGCTTCCGGAGCTCCCTCTCACAGCAA
ACCTCGCAAGGTACCGTCgagcttttcttccctccgcatcgtcgccctcc
tcccccctcctccctctacctcgTTCCTCACATCCCTCCTCTGTACCTCT
CCGGATGCTTTATCGTGCACCTCTTTTCGCATGCCCTCATTCTCTGGCGA
AAGCTTTCTTATAGCGTCGTGAGTGTCCTCTACCCTTTTCTCTcggcggc
cctggcctttcctccctccatcccgcccccactccttccctccttccctc
cttccctccttcATGCCAGGTCCTGTCCCCCCTCAAGGTGAAGACGAAAG
TGAAAAGGCAATGGAGACGGCCGCGTTGCTGACAGCTGCAGCAGCGGAGC
AATGGGAGGCTAGCTTAGCACGCTTAAAAAATGAAATTAATCGATGCGAT
ATCGAAACAAAGACCTTTCTGGCGCCAATTTTGAAACATCCTTCGGCGCA
GCAGGTCTTGGTCTCGTTTTTGTCTGATCCCAGCAAGTCGTTTCAAGACT
GGATCTGGGAGCCACGGGCGCACGAAGTCCTCAATCGCTTCCGGAGCTCC
CTCTCACAGCAAACCTCGCAAGGTACCGTCgagcttttcttccctccgca
tcgtcgccctcctcccccctcctccctctacctcgTTCCTCACATCCCTC
CTCTGTACCTCTCCGGATGCTTTATCGTGCACCTCTTTTCGCATGCCCTC
ATTCTCTGGCGAAAGCTTTCTTATAGCGTCGTGAGTGTCCTCTACCCTTT
TCTCTcggcggccctggcctttcctccctccatcccgcccccactccttc
cctccttccctccttccctccttcATGCCAGGTCCTGTCCCCCCTCAAGG
TGAAGACGAAAGTGAAAAGGCAATGGAGACGGCCGCGTTGCTGACAGCTG
CAGCAGCGGAGCAATGGGAGGCTAGCTTAGCACGCTTAAAAAATGAAATT
AATCGATGCGATATCGAAACAAAGACCTTTCTGGCGCCAATTTTGAAACA
TCCTTCGGCGCAGCAGGTCTTGGTCTCGTTTTTGTCTGATCCCAGCAAGT
CGTTTCAAGACTGGATCTGGGAGCCACGGGCGCACGAAGTCCTCAATCGC
TTCCGGAGCTCCCTCTCACAGCAAACCTCGCAAGGTACCGTCgagctttt
cttccctccgcatcgtcgccctcctcccccctcctccctctacctcgTTC
CTCACATCCCTCCTCTGTACCTCTCCGGATGCTTTATCGTGCACCTCTTT
TCGCATGCCCTCATTCTCTGGCGAAAGCTTTCTTATAGCGTCGTGAGTGT
CCTCTACCCTTTTCTCTcggcggccctggcctttcctccctccatcccgc
ccccactccttccctccttccctccttccctccttc
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Synonyms
Publications