EWM24850.1, cds5823 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24850.1
Unique Name	cds5823
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:963184..963333 +
Alignment location	CM002466.1:963530..963603 +
Alignment location	CM002466.1:963822..964159 +

Link to JBrowse

Properties


Property Name	Value
End range	.
End range	964159
Protein id	EWM24850.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100882g3.6795.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:963184..963333 +
CM002466.1	supercontig	CM002466.1:963530..963603 +
CM002466.1	supercontig	CM002466.1:963822..964159 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

[Close]

BLAST of EWM24850.1 vs. NCBI_GenBank
Match: gi|585106454|gb|EWM24850.1| (hypothetical protein Naga_100882g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 371.703 bits (953), Expect = 4.118e-130
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0

Query:    1 MPGPVPPQGEDESEKAMETAALLTAAAAEQWEASLARLKNEINRCDIETKTFLAPILKHPSAQQVLVSFLSDPSKSFQDWIWEPRAHEVLNRFRSSLSQQTSQGTVELFFPPHRRPPPPSSLYLVPHIPPLYLSGCFIVHLFSHALILWRKLSYSVVSVLYPFLSAALAFPPSIPPPLLPSFPPSLL 187
            MPGPVPPQGEDESEKAMETAALLTAAAAEQWEASLARLKNEINRCDIETKTFLAPILKHPSAQQVLVSFLSDPSKSFQDWIWEPRAHEVLNRFRSSLSQQTSQGTVELFFPPHRRPPPPSSLYLVPHIPPLYLSGCFIVHLFSHALILWRKLSYSVVSVLYPFLSAALAFPPSIPPPLLPSFPPSLL
Sbjct:    1 MPGPVPPQGEDESEKAMETAALLTAAAAEQWEASLARLKNEINRCDIETKTFLAPILKHPSAQQVLVSFLSDPSKSFQDWIWEPRAHEVLNRFRSSLSQQTSQGTVELFFPPHRRPPPPSSLYLVPHIPPLYLSGCFIVHLFSHALILWRKLSYSVVSVLYPFLSAALAFPPSIPPPLLPSFPPSLL 187

[Close]

BLAST of EWM24850.1 vs. NCBI_GenBank
Match: gi|695418221|ref|XP_009527349.1| (hypothetical protein PHYSODRAFT_498836 [Phytophthora sojae] >gi|348678474|gb|EGZ18291.1| hypothetical protein PHYSODRAFT_498836 [Phytophthora sojae])

HSP 1 Score: 64.3142 bits (155), Expect = 7.484e-9
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   34 SLARLKNEINRCDIETKTFLAPILKHPSAQQVLVSFLSDPSKSFQDWIWEPRAHEVLNRFRSSLSQQTSQG 104
             LARL+N +   D +T+ FL P+L     Q++L++F+ D S+SF+DW+W+P+  + L R R +  Q  +QG
Sbjct:    3 ELARLRNALGASDKQTQRFLQPLLPLRGVQELLLTFVRDTSRSFEDWVWDPQVRQTLLRMRDAEPQMHAQG 73

The following BLAST results are available for this feature:

BLAST of EWM24850.1 vs. NCBI_GenBank

BLAST of EWM24850.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585106454\|gb\|EWM24850.1\|	4.118e-130	100.00	hypothetical protein Naga_100882g3, partial [Nanno...	[more]
gi\|695418221\|ref\|XP_009527349.1\|	7.484e-9	39.44	hypothetical protein PHYSODRAFT_498836 [Phytophtho...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5838	rna5838	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications