EWM24866.1, cds5807 (CDS) Nannochloropsis gaditana

Overview
NameEWM24866.1
Unique Namecds5807
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:933601..935025 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24866.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100706g1.1198.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:933601..935025 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR026741SNO
Homology
[Close]
BLAST of EWM24866.1 vs. NCBI_GenBank
Match: gi|585106479|gb|EWM24866.1| (hypothetical protein Naga_100706g1 [Nannochloropsis gaditana])

HSP 1 Score: 984.556 bits (2544), Expect = 0.000e+0
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0 
Query:    1 MHFKSHGGTFCPVGRRVSTCYVLSGAVVPIWPAIQDVVIDRNNKDIQVVRCVTRGERLVGLSIKQGQEKELIESLKDFIHSVNPDGGDDHDLQQLAAAAEKDDHEADFPFEGPQESQGARSGGAGQGHEKGGGIGAIPSQAVAPGRNWNSDAFKNLSVVRGKLRKSLEKEKNSEIDGGGRHDGQHDVVAAKEAAARRYRETKDIENGDAFQLRLRQMKAYGEIDALRGTLRKSKPPDPSFGTVLDNKLWADYMLSFQSHSLESRNLAADKGTPGQHTNTLPSATISSCPKKPLNDSLTGTNTRGTVAAVPWHSNFTGSNAETAALSCQARQISEEGLRCPSHSRMESTAQAVCPLLDTTSISRSSGNTPVHHSTQDHTNDAVTTPDARNSDHLPSSTLPHTDMAPPSPSSLQATSAGLTRRWQRSITQYFAMSNSKKPMARASMPEIVEGVAQRPSSASTVFIADPECEIIDLT 474
            MHFKSHGGTFCPVGRRVSTCYVLSGAVVPIWPAIQDVVIDRNNKDIQVVRCVTRGERLVGLSIKQGQEKELIESLKDFIHSVNPDGGDDHDLQQLAAAAEKDDHEADFPFEGPQESQGARSGGAGQGHEKGGGIGAIPSQAVAPGRNWNSDAFKNLSVVRGKLRKSLEKEKNSEIDGGGRHDGQHDVVAAKEAAARRYRETKDIENGDAFQLRLRQMKAYGEIDALRGTLRKSKPPDPSFGTVLDNKLWADYMLSFQSHSLESRNLAADKGTPGQHTNTLPSATISSCPKKPLNDSLTGTNTRGTVAAVPWHSNFTGSNAETAALSCQARQISEEGLRCPSHSRMESTAQAVCPLLDTTSISRSSGNTPVHHSTQDHTNDAVTTPDARNSDHLPSSTLPHTDMAPPSPSSLQATSAGLTRRWQRSITQYFAMSNSKKPMARASMPEIVEGVAQRPSSASTVFIADPECEIIDLT
Sbjct:    1 MHFKSHGGTFCPVGRRVSTCYVLSGAVVPIWPAIQDVVIDRNNKDIQVVRCVTRGERLVGLSIKQGQEKELIESLKDFIHSVNPDGGDDHDLQQLAAAAEKDDHEADFPFEGPQESQGARSGGAGQGHEKGGGIGAIPSQAVAPGRNWNSDAFKNLSVVRGKLRKSLEKEKNSEIDGGGRHDGQHDVVAAKEAAARRYRETKDIENGDAFQLRLRQMKAYGEIDALRGTLRKSKPPDPSFGTVLDNKLWADYMLSFQSHSLESRNLAADKGTPGQHTNTLPSATISSCPKKPLNDSLTGTNTRGTVAAVPWHSNFTGSNAETAALSCQARQISEEGLRCPSHSRMESTAQAVCPLLDTTSISRSSGNTPVHHSTQDHTNDAVTTPDARNSDHLPSSTLPHTDMAPPSPSSLQATSAGLTRRWQRSITQYFAMSNSKKPMARASMPEIVEGVAQRPSSASTVFIADPECEIIDLT 474
The following BLAST results are available for this feature:
BLAST of EWM24866.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106479|gb|EWM24866.1|0.000e+0100.00hypothetical protein Naga_100706g1 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5822rna5822Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications