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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100706g1.1198.mrna |
| Orig protein id | gnl|cribi|Naga_100706g1.1198 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:933601..935387 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5822 ID=rna5822|Name=rna5822|organism=Nannochloropsis gaditana|type=mRNA|length=452bp
CCCAGTAACCACAGGAGGAAGGTCATTCGCAGTACTTATGCCTTCTTTCC
AACCAGCAAGTTCAGCGCATTACCGCTAGAAAGCTGATACTTCACGCTTC
GCACGAGCCCGGGCTGCATGCTTCTCTGTCACCATTTTTATTGAAAGCCA
TGTCATTGTTGCAAGAAGAAGCCTTGAAGGCCCTTAAGCTTGTGAAGGCT
GACTTGGATGCCACCAAACGTGTAAAGCAACAGCTGGTAGCGGCCGTGGA
AAACAAGGACGCAGAACTCGCCACGTTACAAGGCCAGGTCGATGCACTGA
AACTGGAGGTGCAATTCCTTTCCTCCATGGGGAAGGAGGGAGGGGCTGCC
CTGGGTGCGCCCTCGGAGGAGGAGAACGCTCTCCACCAACGCCTGGAAGC
CTTGGAGAAGGAAAAGAGCGAGTGGATTCTCGACCGCGGGTCTCTTCACG
CC back to topprotein sequence of rna5822 >rna5822-protein ID=rna5822-protein|Name=rna5822|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MHFKSHGGTFCPVGRRVSTCYVLSGAVVPIWPAIQDVVIDRNNKDIQVVR
CVTRGERLVGLSIKQGQEKELIESLKDFIHSVNPDGGDDHDLQQLAAAAE
KDDHEADFPFEGPQESQGARSGGAGQGHEKGGGIGAIPSQAVAPGRNWNS
DAFKNLSVVRGKLRKSLEKEKNSEIDGGGRHDGQHDVVAAKEAAARRYRE
TKDIENGDAFQLRLRQMKAYGEIDALRGTLRKSKPPDPSFGTVLDNKLWA
DYMLSFQSHSLESRNLAADKGTPGQHTNTLPSATISSCPKKPLNDSLTGT
NTRGTVAAVPWHSNFTGSNAETAALSCQARQISEEGLRCPSHSRMESTAQ
AVCPLLDTTSISRSSGNTPVHHSTQDHTNDAVTTPDARNSDHLPSSTLPH
TDMAPPSPSSLQATSAGLTRRWQRSITQYFAMSNSKKPMARASMPEIVEG
VAQRPSSASTVFIADPECEIIDLT back to topmRNA from alignment at CM002466.1:933601..935387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5822 ID=rna5822|Name=rna5822|organism=Nannochloropsis gaditana|type=mRNA|length=1787bp|location=Sequence derived from alignment at CM002466.1:933601..935387+ (Nannochloropsis gaditana)
ATGCACTTCAAAAGCCACGGAGGCACATTTTGTCCAGTGGGCCGACGGGT
CTCCACCTGCTACGTCTTGAGCGGCGCCGTGGTTCCGATTTGGCCGGCGA
TCCAGGACGTGGTGATCGATCGAAACAACAAAGACATCCAGGTCGTCCGC
TGCGTGACGCGTGGCGAGCGTTTGGTGGGGTTGAGCATCAAACaagggca
ggagaaggaactGATCGAGAGCTTGAAAGACTTCATCCACTCCGTGAACC
CGGACGGGGGCGACGACCACGATCTGCAGCAgctggcggcagcggcggag
aaggacgacCACGAAGCCGATTTTCCTTTTGAAGGACCGCAGGAGTCCCA
GGGCGCCCGAAGCGGTGGAGCAGGACAGGGGCATGAGAAAGGTGGAGGCA
TCGGGGCAATCCCTTCCCAGGCCGTGGCTCCTGGCCGCAACTGGAATTCG
GACGCATTCAAAAACTTGAGCGTCGTGCGAGGGAAACTTCGAAAATCttt
ggaaaaggagaagaataGCGAAATCGATGGCGGTGGGAGGCATGATGGAC
AGCACGATGTGGTCGCCGCGAAGGAGGCAGCTGCACGTAGGTACAGGGAA
ACCAAAGACATCGAGAATGGAGACGCCTTCCAGCTTCGGTTGCGCCAGAT
GAAAGCGTATGGCGAGATTGATGCCCTGAGAGGGACGCtgaggaagagca
agccaCCAGATCCTTCTTTTGGTACCGTTTTAGACAACAAGCTATGGGCA
GACTATATGTTAAGCTTCCAATCTCATTCGCTCGAGTCCCGAAACCTCGC
GGCAGATAAAGGGACGCCCGGCCAACATACCAATACGCTACCATCCGCCA
CGATCTCTTCCTGTCCTAAAAAGCCTCTGAACGACAGTCTCACCGGTACC
AATACGAGGGGGACCGTGGCAGCTGTGCCCTGGCATTCAAATTTCACAGG
GTCCAACGCGGAAACGGCGGCTTTGTCTTGCCAAGCCCGGCAGATCTCTG
AAGAAGGCCTTCGATGTCCAAGTCATTCCCGCATGGAATCTACAGCTCAA
GCAGTTTGTCCCCTCTTGGATACCACCTCCATAAGCAGAAGTAGTGGGAA
TACCCCTGTACATCATTCGACCCAGGACCATACCAATGACGCTGTCACCA
CCCCCGACGCCAGGAACAGCGACCACTTGCCTAGTAGCACCCTTCCACAC
ACCGACATGGCACCtccgtcgccgtcctccctccaagccacGTCTGCAGG
ACTAACGAGGCGATGGCAACGCTCAATTACGCAATATTTTGCAATGAGCA
ACAGCAAGAAACCAATGGCGAGGGCATCGATGCCCGAGATCGTAGAAGGT
GTCGCCCAGCGCCCCTCTTCAGCTTCCACAGTATTCATAGCAGACCCTGA
ATGTGAAATTATTGACCTGACATAACTGCAGACATTAAGAGGTGCTTTCA
AATGTTCAAGGAGAATTATCTGCTTCTCGTTCGTTCGCTGTCCGTGTCCG
AACGACTGATCCGGTACTACCGCCGGCTGTTACATATCTTTTCAAATGAG
AAGCTATATTATCTTTATGAATAAGAAAGGTAGTGAGCGCTTTATTCGTC
TTCCATCTGAACAGTAGGTTGATCAAGAGGCGAAAGCCACGGGAGATGAA
TGACCTCGATTGGAGCGCAAGATCGATACACTACCAATAATCAAAGAGAA
CCGTAGTCAAGAAAAGCTATCGTGATGTGCATAATTGCCAAAGTAATCGC
GAAAACAAACAAATGGATGCGAGTAGCTGTATTGACT back to topCoding sequence (CDS) from alignment at CM002466.1:933601..935387+ >rna5822 ID=rna5822|Name=rna5822|organism=Nannochloropsis gaditana|type=CDS|length=1425bp|location=Sequence derived from alignment at CM002466.1:933601..935387+ (Nannochloropsis gaditana)
ATGCACTTCAAAAGCCACGGAGGCACATTTTGTCCAGTGGGCCGACGGGT
CTCCACCTGCTACGTCTTGAGCGGCGCCGTGGTTCCGATTTGGCCGGCGA
TCCAGGACGTGGTGATCGATCGAAACAACAAAGACATCCAGGTCGTCCGC
TGCGTGACGCGTGGCGAGCGTTTGGTGGGGTTGAGCATCAAACaagggca
ggagaaggaactGATCGAGAGCTTGAAAGACTTCATCCACTCCGTGAACC
CGGACGGGGGCGACGACCACGATCTGCAGCAgctggcggcagcggcggag
aaggacgacCACGAAGCCGATTTTCCTTTTGAAGGACCGCAGGAGTCCCA
GGGCGCCCGAAGCGGTGGAGCAGGACAGGGGCATGAGAAAGGTGGAGGCA
TCGGGGCAATCCCTTCCCAGGCCGTGGCTCCTGGCCGCAACTGGAATTCG
GACGCATTCAAAAACTTGAGCGTCGTGCGAGGGAAACTTCGAAAATCttt
ggaaaaggagaagaataGCGAAATCGATGGCGGTGGGAGGCATGATGGAC
AGCACGATGTGGTCGCCGCGAAGGAGGCAGCTGCACGTAGGTACAGGGAA
ACCAAAGACATCGAGAATGGAGACGCCTTCCAGCTTCGGTTGCGCCAGAT
GAAAGCGTATGGCGAGATTGATGCCCTGAGAGGGACGCtgaggaagagca
agccaCCAGATCCTTCTTTTGGTACCGTTTTAGACAACAAGCTATGGGCA
GACTATATGTTAAGCTTCCAATCTCATTCGCTCGAGTCCCGAAACCTCGC
GGCAGATAAAGGGACGCCCGGCCAACATACCAATACGCTACCATCCGCCA
CGATCTCTTCCTGTCCTAAAAAGCCTCTGAACGACAGTCTCACCGGTACC
AATACGAGGGGGACCGTGGCAGCTGTGCCCTGGCATTCAAATTTCACAGG
GTCCAACGCGGAAACGGCGGCTTTGTCTTGCCAAGCCCGGCAGATCTCTG
AAGAAGGCCTTCGATGTCCAAGTCATTCCCGCATGGAATCTACAGCTCAA
GCAGTTTGTCCCCTCTTGGATACCACCTCCATAAGCAGAAGTAGTGGGAA
TACCCCTGTACATCATTCGACCCAGGACCATACCAATGACGCTGTCACCA
CCCCCGACGCCAGGAACAGCGACCACTTGCCTAGTAGCACCCTTCCACAC
ACCGACATGGCACCtccgtcgccgtcctccctccaagccacGTCTGCAGG
ACTAACGAGGCGATGGCAACGCTCAATTACGCAATATTTTGCAATGAGCA
ACAGCAAGAAACCAATGGCGAGGGCATCGATGCCCGAGATCGTAGAAGGT
GTCGCCCAGCGCCCCTCTTCAGCTTCCACAGTATTCATAGCAGACCCTGA
ATGTGAAATTATTGACCTGACATAA back to top
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