rna5809, rna5809 (mRNA) Nannochloropsis gaditana

Overview
Namerna5809
Unique Namerna5809
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3229
Alignment locationCM002466.1:893632..894516 +

Link to JBrowse

Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100265g3.8302.mrna
Orig protein idgnl|cribi|Naga_100265g3.8302
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:893632..894516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100265g3gene5609Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5809rna5809-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24882.1cds5794Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5809 ID=rna5809|Name=rna5809|organism=Nannochloropsis gaditana|type=mRNA|length=3229bp
CTCCCAAAAACAAGAAGACACATCTTACGCCTAACAAACCGATGGTAACC
AGCCAACCGACCATTTGTCAATGAGTGAGGGCAGCTTGAGGAAGTGGACT
GCGTGGTGGTGCTGCTTTGTGTGTGATTTTTAGGGGTGTGGCTGTTGCGC
CCATTGGCAGGGACCCGACCTCGGCAGCAGCCTCCTCTCCCACGACCGCT
ATTTGGTTTGCGATGAATCTCACAACATTTTCCTTCCCAGTCGCGTTCTC
CATTAAGACCCGCGCCATCCGACAACCCATGTCGTCCCACGAGAAGAAGG
AGACGGCAAAGTTGCTGTCGTTGTCGCCCAAAAAAATGTCCGGCTATGGC
AGTACGCCTGTGGCATCTCCACGCTCGCTCACTCCTACGCCTCGCTCCAG
AGAGGAAGGTGAGTTTTTCATGGCATTGACCAAGACCACCACCACCAGTC
GCATCCGTATTGCGAACCTTTGCTGTAGCATGGAAACAAAGCTGGTGAAG
GAGCTGCTGAAGCCGCTGAAAGGGGTGCTGGACGTGAAGGTGTCAGAAGT
CGGCCGCATTGCGATCGTCCGTCATACCGAGGCCGTCTCAGCCACGCTTC
TTCTCGCAACCCTGAACGCAGCGCACTTAGGTGCCTCCCTCCAAGACGTC
CACTTCAATCACCATGATGAGGATGCGGACGACGACGAAGGTAACGACAG
GGGCGGGAGAAGCCAGCGACGCTTGCGGGCTTGCGGTGGCATGGTCCACC
CTGACGCGGGCCCATGGACTGCCCTCCTCGTGGCCGCGGTGGGTTGGACG
GTCGCCATGCTCAGCTCCCACCTTCATTGGCGACCCCTCGTGCAATACGT
CCTGGTTATTCCTTGTGTGCTGGTGGCTTTCTCGCCCTTGGCGTTACCCC
TATTGCGGGCGGCGCAGCATCTCCGTGTGGACGTGAACGTCTTGATGAGC
TCCGCCGTTATCGGTGCCCTGTGCCTAGGAGACCTGGCCGAGGCCCTGGG
AGTGCTGTTGCTGGTGCTGATGGCGGACAGGGTCAGGTGCGCTGCCCTCG
ATTATGTGGCAGCGCTCTTGGACTCGACCAGCGGACGCCTGATGCACGCG
CAAGTCGCCCATGTCCTGTCGTTCGCCGCCGAGAAAGACGGCGGAGAGCC
CGGGAAGAAAGGGAAAGACCAGGGCCAGGACGTGGGAGGGAAAAAGCGCC
GCGGGGCCGAAGGTGGCTTGCCGACGACGGACGTGCCGGTGACGGAGGTC
CGGGTTGGGGACCTCGTCTTGGTACGGGCGGGGGAGCAAGCCCCCGTGGA
CGGCGTGGTGGTGCACGGGGAGGCGGCCATGGACGAGTCGGCGTTGACGG
GGGAGTGCATGCCCGTAGAGAAGAAGGCAGGGGCCCGGGTCGCGGGAGGA
AGCATTTGCCAGGCTGGGGCTCTGGAAATTTCCTGCACGGCCCCCCCCTC
CCATTCCAGCCTCCGGGTCATCCAGGACATGGTTCACGACATTGCCACCA
GCCAAGCTCCTTCCCAAGAAATGCTGGACCGATTCGCGGCCGTCTACACC
CCCTTGGTCCTCTTCCTTTCCTTCGGCTTGGCCCTGGCACCGGAGGTCTG
GGCTGTCCTACGGGGCAAGCCTGTGGCGGAAGTCGGGTGGCAGCAAGGTC
TTTACCGTGGCTTGGAGCTCTTGGTCCTTGCCTGTCCATGTGCCTTGGCC
ATGGCCACGCCCCTCCCTTTCCTGACTACCCTGGCGGCCTCCGCGGCGCG
CGCAGGGGTCTTGTTCAAAAGCGCCACCGCCTTGGAAACCTTGAGTACGG
TCCAAGTCCTGGCGTGCGACAAAACCGGTACCTTGACCGAAGGACGGTTC
ATGGTGAGCGGGCGTTTGACCCTGCACCGAACCGCAAAACACGACCCGGA
TGTAGTCCGCCTGTTGGCGGCCAGCGTGGAGAGCAACGTGGCCCATCGCT
TGTCGGCGGCGGTCGTTTTGGATGCCCTGGGGTGTGTCACGGAAGCCTTT
TATTCGAACAAAGAGGACGGGCAAAAGCCGGAGGGGAACCCGGTGCCGAA
AAAAAAACTGGCCAAAGTCTCCAAACTCCGCCACATGGAGGGGGTGGGCG
TGGAGGGCGAATGCGTCCTGGAGGACTACGAGGAAAGCTTCTTGGTCACG
GTCGGAAACCGGGCATTGTTGGACGATGCGGATTTAGACGACCCGGAGGT
ACAAGCCTTCCTAGAGCGCTACCAGGGCGAAGCCCACTTGTTCGTTTTGG
TGGACGGCGTGCCCGAAATGGCCCTGAGTTTGACGGATCGAGTCCGGGCG
GAGGCGCCCGCCATGCTTCGGGCCTTGGCAGACGAGTTGCAGGTGGAAAC
CACCCTCTTGACCGGTGACTCGGAGGGGGTAGCCAAGGCGTTGCAAGCCA
AGGTGGGCCCTGACCTTCTCCCGACGGTGCTGGCGCGCCTGAAACCGAGG
GACAAACTGCACTGGATCGAGGAGCGGCAACGCCAGCCCCCGCCAGTGAA
GGCAGCCTTCTCGTCGTTGCGCCGTACCTCTGTCTCCAGCTACGTGACCG
TATCGGCCTCGGCCACCACGGCGCCTTACCAGCGGATAGACGATGTCAAC
ACCTTGGATCAATTGGAGGGGGCAGCACGAGCGGATAAGTCGGACAAGCG
GGATCACTCGGGCACACGGGGAAAAGATGGGAAGCAGTGCATCGTGGCCA
TGCTGGGAGACGGTGTAAACGACGCGCCCTCCCTCCGCGCGGCCGACGTC
GGACTGGCCATGGGAGAGCATGGCATGGCTCTGGCTGTCCAAGCCGCCGA
TGTGGTGCTGTTGTCGGACGACCTGTCGCGGGTTCCGCAGGCCATTCGTA
TGTCGCATTTTGTGCGGTGGATTGTTGTGCAGAATCTGTTCCTGGCGCTT
GGTTTGAAAATCTTTTTGATGCTTGTGATATTTTCCGGGGAAGGGCGGTT
GTGGGAAGCAGTTGCAAGCGACGGGTTAAGTTTAATGGCGGTGATTGTTA
ATGGCCTGCGGCCGTTGTACGTAGCAGGGAAAATTTTTGAGGACATAGAA
GAAGAAGATGTCGTGTAAATTTAAACAATTTGGAGTATGTCGCGTAGGTA
CATGCCAGATTGCGGGAAAGGAAGAAAGTCACCTTTGTATGTAGTTATTT
TCGTTTTAGTTCGACTCTCGTGAGTGGGATAAAGACATGGCATGCGCACG
CCTCATGCGAAGCATAAAAAGTATATATT
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protein sequence of rna5809

>rna5809-protein ID=rna5809-protein|Name=rna5809|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MATFASTPVTTGKQSKAGGERQPGLEHEMNPKPEVIRSNYEGANKLAGTV
AIITGADSGIGRAVAVHFAREGAKGITIAYLDEHKDAQETKRMVEEEGSQ
AILIAGDVGDNEHCKSIVELTLKTFGELSCLVNNAAEQHICNDFLDITRK
QLECTFRTNILSYFFMAQAALPHLKAGSSIINTTSVTAYKGMPQLIDYSS
AKGAIVSFTRSLAINLANKDIRVNGVAPGPIWTPLIPATFPEEAKVEKFG
QEVPMERSAQPSEVAPSYVFLASPDGSFFNGQVLHPNGGTVING
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mRNA from alignment at CM002466.1:893632..894516+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5809 ID=rna5809|Name=rna5809|organism=Nannochloropsis gaditana|type=mRNA|length=885bp|location=Sequence derived from alignment at CM002466.1:893632..894516+ (Nannochloropsis gaditana)
ATGGCCACATTTGCCTCGACGCCGGTCACCACTGGAAAGCAAAGCAAGGC
CGGTGGTGAGCGTCAACCTGGTTTGGAGCACGAAATGAACCCTAAACCGG
AAGTGATTCGATCAAATTATGAAGGCGCTAATAAATTGGCTGGTACGGTA
GCGATTATCACAGGCGCAGATAGTGGGATCGGTCGAGCTGTCGCAGTTCA
TTTTGCACGGGAGGGGGCCAAAGGCATAACTATTGCCTATTTGGACGAGC
ACAAAGATGCCCAAGAAACAAAACGCAtggtagaggaagaaggtaGTCAA
GCCATTCTTATTGCAGGAGATGTGGGGGATAATGAACACTGCAAAAGTAT
TGTCGAGCTGACTTTGAAAACGTTTGGCGAGCTAAGCTGCTTGGTTAACA
ATGCGGCAGAGCAACACATCTGCAACGACTTCTTGGACATTACGAGAAAG
CAGCTCGAGTGTACATTCCGCACAAATATTCTGTCCTATTTCTTCATGGC
CCAAGCTGCGCTGCCGCATTTAAAGGCTGGTAGCTCCATCATCAACACAA
CTAGCGTGACAGCTTACAAAGGAATGCCACAGTTGATCGACTACAGCAGC
GCCAAGGGTGCAATCGTCTCGTTCACTCGTTCCCTTGCCATCAATCTCGC
CAATAAGGACATCAGGGTGAACGGGGTGGCGCCTGGACCGATTTGGACGC
CTCTTATCCCTGCGACGTTCCCTGAGGAGGCGAAAGTAGAAAAATTCGGC
CAGGAGGTGCCCATGGAACGCAGTGCTCAGCCCAGCGAGGTGGCCCCCTC
TTATGTCTTCCTGGCGAGCCCTGATGGATCGTTTTTCAACGGACAGGTCT
TGCATCCCAATGGAGGGACGGTGATTAATGGCTAA
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Coding sequence (CDS) from alignment at CM002466.1:893632..894516+

>rna5809 ID=rna5809|Name=rna5809|organism=Nannochloropsis gaditana|type=CDS|length=885bp|location=Sequence derived from alignment at CM002466.1:893632..894516+ (Nannochloropsis gaditana)
ATGGCCACATTTGCCTCGACGCCGGTCACCACTGGAAAGCAAAGCAAGGC
CGGTGGTGAGCGTCAACCTGGTTTGGAGCACGAAATGAACCCTAAACCGG
AAGTGATTCGATCAAATTATGAAGGCGCTAATAAATTGGCTGGTACGGTA
GCGATTATCACAGGCGCAGATAGTGGGATCGGTCGAGCTGTCGCAGTTCA
TTTTGCACGGGAGGGGGCCAAAGGCATAACTATTGCCTATTTGGACGAGC
ACAAAGATGCCCAAGAAACAAAACGCAtggtagaggaagaaggtaGTCAA
GCCATTCTTATTGCAGGAGATGTGGGGGATAATGAACACTGCAAAAGTAT
TGTCGAGCTGACTTTGAAAACGTTTGGCGAGCTAAGCTGCTTGGTTAACA
ATGCGGCAGAGCAACACATCTGCAACGACTTCTTGGACATTACGAGAAAG
CAGCTCGAGTGTACATTCCGCACAAATATTCTGTCCTATTTCTTCATGGC
CCAAGCTGCGCTGCCGCATTTAAAGGCTGGTAGCTCCATCATCAACACAA
CTAGCGTGACAGCTTACAAAGGAATGCCACAGTTGATCGACTACAGCAGC
GCCAAGGGTGCAATCGTCTCGTTCACTCGTTCCCTTGCCATCAATCTCGC
CAATAAGGACATCAGGGTGAACGGGGTGGCGCCTGGACCGATTTGGACGC
CTCTTATCCCTGCGACGTTCCCTGAGGAGGCGAAAGTAGAAAAATTCGGC
CAGGAGGTGCCCATGGAACGCAGTGCTCAGCCCAGCGAGGTGGCCCCCTC
TTATGTCTTCCTGGCGAGCCCTGATGGATCGTTTTTCAACGGACAGGTCT
TGCATCCCAATGGAGGGACGGTGATTAATGGCTAA
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Synonyms
Publications