EWM24879.1, cds5790 (CDS) Nannochloropsis gaditana

Overview
NameEWM24879.1
Unique Namecds5790
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:883749..883836 +
Alignment locationCM002466.1:883886..884241 +
Alignment locationCM002466.1:884453..884533 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24879.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100265g7.8299.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:883749..883836 +
CM002466.1supercontigCM002466.1:883886..884241 +
CM002466.1supercontigCM002466.1:884453..884533 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24879.1 vs. NCBI_GenBank
Match: gi|585106504|gb|EWM24879.1| (hypothetical protein Naga_100265g7 [Nannochloropsis gaditana])

HSP 1 Score: 368.622 bits (945), Expect = 2.293e-129
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 
Query:    1 MFNESIVASSRATRNQAAEFQAYVTDMIPTAFRSILRMFCRAQTALRIMHRVYASIVSRQTSFTHCLRSTVNAGTMGNIFPTTASNGYIAPGHTEISTPNAVRWRPHHFDSRCEKLFCDGFCHENKKFYTGSSAHPNRTSEWVWSRGELGATKNKGPDYVEAEKKMKHTLDASS 174
            MFNESIVASSRATRNQAAEFQAYVTDMIPTAFRSILRMFCRAQTALRIMHRVYASIVSRQTSFTHCLRSTVNAGTMGNIFPTTASNGYIAPGHTEISTPNAVRWRPHHFDSRCEKLFCDGFCHENKKFYTGSSAHPNRTSEWVWSRGELGATKNKGPDYVEAEKKMKHTLDASS
Sbjct:    1 MFNESIVASSRATRNQAAEFQAYVTDMIPTAFRSILRMFCRAQTALRIMHRVYASIVSRQTSFTHCLRSTVNAGTMGNIFPTTASNGYIAPGHTEISTPNAVRWRPHHFDSRCEKLFCDGFCHENKKFYTGSSAHPNRTSEWVWSRGELGATKNKGPDYVEAEKKMKHTLDASS 174
The following BLAST results are available for this feature:
BLAST of EWM24879.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106504|gb|EWM24879.1|2.293e-129100.00hypothetical protein Naga_100265g7 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5805rna5805Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications