rna5805, rna5805 (mRNA) Nannochloropsis gaditana

Overview
Namerna5805
Unique Namerna5805
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1277
Alignment locationCM002466.1:883749..884533 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100265g7.8299.mrna
Orig protein idgnl|cribi|Naga_100265g7.8299
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:883749..884533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100265g7gene5605Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5805rna5805-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24879.1cds5790Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5805 ID=rna5805|Name=rna5805|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp
TCCCGTGTCGACTTCCTTTTGTACCGACAAGCGGCTGTTCCCAAAATTGA
CATTCGTGGTTCTTTTCGTAACTATTCATTTCTTGTGCACGGATAAATGT
GCCGGGATGGAAGCTTTCCTGGGGGGTTGAAACGTTTCGTTTCTACTCAA
GCTAGCAGCCATATCTTTCAAGTGCCTGACCCTCGGCGCCTTCAGCCCTG
TTCTGACCGATATTGAAGTAGCATGGAAACCAACACTCACGTTCGCTCCT
TTAAAACACACTTCATAAAACAAGAACATCAATCCAGACAAGGCAAGCAA
TCATGTCTCAGACTCTCGCGGCGGCTAACCTGACTTCGTCATCCTCGGGC
CATGGGATGGGGGGTCTGGTGTTGACTAAATTTCCCATCGGCCTCGTTGC
TACTTCCATTTCCAAGGTCTCCTCCTCCGCCCTGTCCACATCTTCTGCGA
AGGCCCCTCAGATCACCTTGACAGCAACGCCGATGCCACTGCGCGCGGAG
CTAAAGCGTCGGAACAGCCACCCTCTGCGATTGGCGCCAAGAGGTGTAAA
CGCGGTTGACGGTGACGAGGAGGAGACATTGTCGCAAACATCTGCCAGTC
TCAAAGCTTTAATAATCGTTTTCACCATCTATACATTAATTCGAGGATGG
AACGGCTTTGTGGAGAAAGGAATGGATGCCGCGGTCGAGGCTGTGCAGCA
ACTCGTGATGTTGGTGGTCCTCGTTGTCGGTGTGGCGCCCTTACTCGACC
AGTATTTCTTCTAGAGTGTGTGCTCTGTTGGCAATTTTAATTTTTTTATC
CTGTTGATATAAGGAAGTGCCGGTCGAACTAATAGAAAAGGCACCTCAAA
GGAGTGTTGCATGTCGTCGAGGGAGAAAACACCATGACCTCGGAGGGGCA
AGCAGATTATCCCTCGTATGACGTGACGACTAAAGTCGTTGGAGTCTGCT
TCATGTAAAAGCTAATCTTTTTGTTTATTAACTTGAATACTGACGCGCAA
ATGCCCAGTTGAGATCGGGGAGGCGCACACGAGGTGCGGGATGGAGACAA
GGGCCTCGCCCTTCGCAGCGCCTGGGAGACAACTCCTTGAGGAGGGATGG
TGCTACGGCGGCACGCGCGTGATGAAATCTATGGTATGAATTTTATATTG
AAAACGGTCTGAAAAGTAATGCGCGAGGGATGCTGTTATGGATAGAAGCG
GGCGGTCCGTACGGGGGACAGGAAAGACACGTGGGTAGGTGAAACTTTTG
ACAAAATACATACCGAGCAAACTTTGA
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protein sequence of rna5805

>rna5805-protein ID=rna5805-protein|Name=rna5805|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MFNESIVASSRATRNQAAEFQAYVTDMIPTAFRSILRMFCRAQTALRIMH
RVYASIVSRQTSFTHCLRSTVNAGTMGNIFPTTASNGYIAPGHTEISTPN
AVRWRPHHFDSRCEKLFCDGFCHENKKFYTGSSAHPNRTSEWVWSRGELG
ATKNKGPDYVEAEKKMKHTLDASS
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mRNA from alignment at CM002466.1:883749..884533+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5805 ID=rna5805|Name=rna5805|organism=Nannochloropsis gaditana|type=mRNA|length=785bp|location=Sequence derived from alignment at CM002466.1:883749..884533+ (Nannochloropsis gaditana)
ATGTTCAACGAAAGCATCGTGGCCAGCAGTCGGGCAACGAGAAATCAGGC
TGCAGAATTTCAGGCGTACGTGACAGATATGATACCCAGTCGCTGCCCTA
CCATGAGGCTGGGGCAACGCGTTGTTCCTGTTCCAAGCCGCTTTTCGGTC
CATTTTGAGGATGTTTTGTCGTGCGCAGACTGCCTTGAGGATCATGCACC
GGGTGTACGCCTCCATAGTATCTAGGCAAACAAGTTTCACTCATTGTCTT
CGGTCCACCGTGAACGCAGGCACAATGGGTAACATTTTTCCAACTACGGC
AAGTAACGGTTACATTGCACCTGGCCACACAGAGATAAGTACGCCTAATG
CCGTGAGATGGCGGCCGCATCACTTCGATAGCCGATGTGAGAAACTTTTT
TGTGACGGTTTTTGCCATGAAAACAAAAAGTTTTACACTGGTAGCTCTGC
TCATCCGAACCGTACATCGGAATGGGTTTggtcaaggggggaggtcagtA
CCGACTCACCAAGACGCCGGAAACGAGACGTTTGGCAAGGAGATGCGAAC
GATGATGGGTTTCTCGGCAATAAAAGAGTCCGGATCGCAATGTACCAGCA
TAAACACGAGAGGTGTGAGGAAATAGACATCGCAATGGAGGGCACGGAGT
GGAAGCGTGAAACAAAAAAATCTCATCAAAAAGACAAACTTCAGGACTCT
GCAGTTGGGTGCAACAAAGAACAAGGGGCCGGATTACGTCGAAGCggaga
agaaaatgaaaCATACGTTGGACGCGAGCTCGTAA
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Coding sequence (CDS) from alignment at CM002466.1:883749..884533+

>rna5805 ID=rna5805|Name=rna5805|organism=Nannochloropsis gaditana|type=CDS|length=1575bp|location=Sequence derived from alignment at CM002466.1:883749..884533+ (Nannochloropsis gaditana)
ATGTTCAACGAAAGCATCGTGGCCAGCAGTCGGGCAACGAGAAATCAGGC
TGCAGAATTTCAGGCGTACGTGACAGATATGATACCCACCGCTTTTCGGT
CCATTTTGAGGATGTTTTGTCGTGCGCAGACTGCCTTGAGGATCATGCAC
CGGGTGTACGCCTCCATAGTATCTAGGCAAACAAGTTTCACTCATTGTCT
TCGGTCCACCGTGAACGCAGGCACAATGGGTAACATTTTTCCAACTACGG
CAAGTAACGGTTACATTGCACCTGGCCACACAGAGATAAGTACGCCTAAT
GCCGTGAGATGGCGGCCGCATCACTTCGATAGCCGATGTGAGAAACTTTT
TTGTGACGGTTTTTGCCATGAAAACAAAAAGTTTTACACTGGTAGCTCTG
CTCATCCGAACCGTACATCGGAATGGGTTTggtcaaggggggagTTGGGT
GCAACAAAGAACAAGGGGCCGGATTACGTCGAAGCggagaagaaaatgaa
aCATACGTTGGACGCGAGCTCGTAAATGTTCAACGAAAGCATCGTGGCCA
GCAGTCGGGCAACGAGAAATCAGGCTGCAGAATTTCAGGCGTACGTGACA
GATATGATACCCACCGCTTTTCGGTCCATTTTGAGGATGTTTTGTCGTGC
GCAGACTGCCTTGAGGATCATGCACCGGGTGTACGCCTCCATAGTATCTA
GGCAAACAAGTTTCACTCATTGTCTTCGGTCCACCGTGAACGCAGGCACA
ATGGGTAACATTTTTCCAACTACGGCAAGTAACGGTTACATTGCACCTGG
CCACACAGAGATAAGTACGCCTAATGCCGTGAGATGGCGGCCGCATCACT
TCGATAGCCGATGTGAGAAACTTTTTTGTGACGGTTTTTGCCATGAAAAC
AAAAAGTTTTACACTGGTAGCTCTGCTCATCCGAACCGTACATCGGAATG
GGTTTggtcaaggggggagTTGGGTGCAACAAAGAACAAGGGGCCGGATT
ACGTCGAAGCggagaagaaaatgaaaCATACGTTGGACGCGAGCTCGTAA
ATGTTCAACGAAAGCATCGTGGCCAGCAGTCGGGCAACGAGAAATCAGGC
TGCAGAATTTCAGGCGTACGTGACAGATATGATACCCACCGCTTTTCGGT
CCATTTTGAGGATGTTTTGTCGTGCGCAGACTGCCTTGAGGATCATGCAC
CGGGTGTACGCCTCCATAGTATCTAGGCAAACAAGTTTCACTCATTGTCT
TCGGTCCACCGTGAACGCAGGCACAATGGGTAACATTTTTCCAACTACGG
CAAGTAACGGTTACATTGCACCTGGCCACACAGAGATAAGTACGCCTAAT
GCCGTGAGATGGCGGCCGCATCACTTCGATAGCCGATGTGAGAAACTTTT
TTGTGACGGTTTTTGCCATGAAAACAAAAAGTTTTACACTGGTAGCTCTG
CTCATCCGAACCGTACATCGGAATGGGTTTggtcaaggggggagTTGGGT
GCAACAAAGAACAAGGGGCCGGATTACGTCGAAGCggagaagaaaatgaa
aCATACGTTGGACGCGAGCTCGTAA
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Synonyms
Publications