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Properties
| Property Name | Value |
|---|
| Product | thioredoxin-like protein 1 |
| Orig transcript id | gnl|cribi|Naga_100116g2.9017.mrna |
| Orig protein id | gnl|cribi|Naga_100116g2.9017 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:872993..874744 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5801 ID=rna5801|Name=rna5801|organism=Nannochloropsis gaditana|type=mRNA|length=3170bp
CCTGCACAGTTTTGATCACAGTTTATCTGTATTCCAACTGGTCCATCCAA
AAACAGCTCCCTTTAGCCACCGTGTGGCCGGAGCTTCGTGTGCAATAAAA
TCAGAGAAGTATCCTCTGGGCCTACGATCGATCTAGGTACACGACTCGCC
GTCGAAGTTGCACTCCCTACGCCACAGCAACTGGGGGGCACTGAGATTTA
TCCCAGGAATCCCCTTTGTGCCCTTGTTGTGGTGCACGCTTGATGGCAAA
CTCTCGGACGCAGTGCACTGAGAAGTCCGTTCTAATACTTTGCGACGAAC
AAGCCAGACGACAACCATCTGAAGCACCCGACTCGTCTGGAAACAAGAGA
TTGACTGTCAATAACGGATCTGTCGCAAACAAAACCGTGCGGCACTCTGA
TCATCGTGATAGTTCCTCTTCGAGTGACGCTTCGATCACTTCCCCTTCCT
CCAGCCATACTTCGATTGACGAGGCACCGTCCAAGGATTTGTGTTCGTGC
CTGTCCCATCGGAAAGGGCTCTTGTCTTGTGTGAAGCGAGGGGCACGCAG
CGAGGCTGAGGGCCAGCATCGTCGTCAATCTCCGCCTCCATCACGACGGC
TACTGAAGGAGGACAAGCCAAATTTGGAAATAGAAGCGACTAGGCCAGAC
GCGAAAGACGGGGCGCAAGACTGTGAAGACCTTGGGGAGGACGACTGTGC
TCAGCTCTTACCCCGAAAAGATATCTTCACCTGGCAGCAACAACACGATC
CGCAGAGAACGCCCCCCTGTATTCCAACCACGGACACGCGGGATCAACAG
GAGCAGCCGCCGCGTCAGCCGCCATCGCAGTCGCAAGGGTCTCTCAAGAA
GAGGGAAAATCGAAACAATAGCCCCTTAGCTTGCTCCAGTCTTCCGTCCC
ACACATCTTCGCTTCCCGACCCAGCGAACTTCCCCTTGTCTACAAGCAGT
ATCTGCACCCAAATCGCTTCCATGGGATTCATCCTCAACGCGCTCACTTA
CCTGTGGACCGGCGAGTACACGACCTCCGGCAGCACCACCGACCCCTGCG
ATGACCACAGCCGCAGCAGCAGCCGCGGGGGCAGTCTTTCCAGCTCCACA
TACTCCATGCGCGGCGGTTCGGTGGACGGCTACAGCTACGGTCCCCCCCC
CGGGAAGGGCAACTGGGTGGTGCCGGAGGAAGACGAGCAAGTCGACGCTG
CCCATCCCGGGTGCGACCGTTGCCAACGCCGTTCCTGCGGCTTTTCAAAG
ACAGTCTCAGATATTTACGCGGTGGAACCGCTGGCGATTGAGGAGCTGAG
TTTCTTAAGCGTCCTCGGCAAAGGATCGTTTGGGACCGTTGTGCTCTGTC
GCCGTCCTCTGTCAATTTCCTCCTCGTCCTCGTCCTCCTTCCCTTCCTCC
CCCCCTCGTTTGGCAGGGCTTGGCAGCAGCACCCTCGATCGGGAAGACGC
GCCCCTATACGCGATGAAAGTGCTGCGGAAATCCCACCTGGTAGCCAAAC
ACCAAATAGACCGGACGCGTGTGGAGAAAGAAATCATGGACCGGGTCTCT
CATCCCTTCATCATGCACATGTACAGTGCTTTCCAGTCGGAGAATTTCCT
CTTCATGATGCTGGAGTACTGTCGAGGGGGAGAGCTCCTCTTCCATTTGG
CCCGGCGTCGGCGTTTCTGCGAGGCGGCCGCGCGCTTTTACGCCGCCGAA
TTGGTCTTGGCCCTGGAGTATTTGCACCGGCACGACATCGTCTTTCGGGA
TTTGAAACCCGAGAACATTCTCCTGGATGCCCACGGCCACGTGCGCCTGG
GGGACTTTGGGCTGGCGAAGCGCGGCGTCCGGGAGCCGGATCGGGGCGCC
TTGTCCATGTGTGGCACGCCCGAGTACATGGCGCCGGAGGTGTTGACCCA
GCAAGCCTACGGCCGTTCGGTCGATTGGTGGTCCTTGGGGATGCTCACGT
ATGAAATGATGACGGGCTACCCACCATGGTACACACGGGACCGAAAAAAG
CTCGTCCGCCGCGTCAAATTTGCTCCTCTGATGATCCCACCCTCCTTCTC
CCCCTCGCTTGCCTCTTTCGTGGAGGCGCTCTTAATTCGCCATCCTTTAA
GAAGATTGGGCGGGAAAGGAGGCACGGGGGAGGTGAAGCGGCATGGGTTT
TTCCAGCACATCTCCTGGGAAGCTGTCTTGAACAAGAAAGTCATCCCGCC
CATCCGGCCCTTTGAGGAAGGACGGAGGGCGGGAGGGAGGTGGAGCACGC
AAGACAGCCGTGGGAGCGAAAGCAGCGGGAATTCCGGGACGAGAGGGGAG
GGAGGGATGGTGACGTGCCAATCGCCAGTGTGCAAGCTCGAAGGGAGTCG
GCATTTGGACCCGACATCCCCCCGTCGCGTGTCCTTCCTGACGTCATCTC
TTAACGCAAGCGCGACAGACGCAGGGCGCACGAGCGCGACCAGAAAGGCA
GCGGCGGCGTGCCCGCATGAGTTCATCGGCACGGAAAATTTTGAAAAAGA
ATTCACGGGGTTGGACGTCGCCAGTGCCTTTGAGGTCTTGGAGCCCCTGT
CTCCACATTCCAATGCGATTTTTGTCAATTTTAGCACCGAACCCACCATT
CGATGCCTGCGGCCGAAGGAGAGGGAAAAAGAGATGGAGGAAGAGGACGA
TTGTGCCCACCAAGAGATGAGGAGGGAGGAGGAAAGGAGGGCGGCCTTGT
CGGGTCTGACACTGGACGGGGGAAGCAGGAAAAATCTAGGTGCCAGTGCG
GCATAAATAGCATATTAGAGGGGAGAAAGGAGAGAAGGAGGACGGAAAAG
GCGTCTAGAGGCATAATAAAAGTGCCATTCCATGGATGGAGCTGGCTTTG
GCCTGAGGAAAAAAAAAGTCTTATCGTACAGGAAGGAAAAACTCAATGGC
GCCAATTATCGAAAGGGAAGAGATTCCCCCACAGTTTGACATGTTATGGT
CCTTGTGATACACTCCCCCCGAGTTTGAAGCGGGGCTTGCTCAAAGAACA
GCGCCGCGGGGCATCCTTGTCATTCCAAAGTGAGAGTACTCTCAGGAAGC
ACGCCATTCGTAGCGTGGACGCGTGGCGGGGATAAATGTCTTGAACAACG
TGTCCTAACGAAAGGTTGAAAAGAGAAAAGCTATGACCGTGCACGCACCC
ACACATCACGGCCTCGCTGC back to topprotein sequence of rna5801 >rna5801-protein ID=rna5801-protein|Name=rna5801|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MSSEGPPAPPPPPSNEIVDITDKIAKPECFVLNADPKYPWENLFMGDDRL
QLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSF
DDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADY
TALSMLRLFGTPLQGTDVSKIQKQPAQG back to topmRNA from alignment at CM002466.1:872993..874744+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5801 ID=rna5801|Name=rna5801|organism=Nannochloropsis gaditana|type=mRNA|length=1752bp|location=Sequence derived from alignment at CM002466.1:872993..874744+ (Nannochloropsis gaditana)
TCGATAGGCGAATGCAAAAGTTTATGGGACGATGGTGAGGGAACTTGATG
AAAAATGATGGGGAtatggagaaggtggaaaaTATGAACCCACTGGTCTA
CTATCTCGACAGTTCTTGGCTGATTGCCTGGTCTGTCATGCCTTTCCATG
CGGTCCTTCTTTCATCTGCCTCAGGTAGCGACTCGATGCAAAGCAAAGGC
GAATGATACATGTCATCAATCTCGCCTTAAACAGGTACCATGTCAAGTGA
AGgtcctccagctccacctccgcctccatcgaaTGAGATTGTAGATATTA
CAGATAAAATTGCCAAGCCTGAGTGCTTCGTGCTGAATGCGGTACGTCGT
CatggatgagggagaaagctGCTACAACAAGtaaaaaggggagaggcatG
ATCTTCGACGAAAAAGACATTCTCAAAATTTACTCCTTGATTCATGATGC
ACCGTCTTTTGATGCGAACGATGCCGGTATTGTTCTGAGGATTCCTTCAC
GGACCACACTCGACGTGCAGTCCCCAACACGGATTGTCTGTCTCTCACCT
CAACCACCACAACGTTACAGGACCCTAAGTACCCATGGGAAAATTTATTC
ATGGGCGATGACCGCCTCCAACTTCGATCGGACACAGATGAACAGTTAAT
TTTGCACCTTGTATTTTCCGAGGCCGTTAAAGTCCACAGCCTCAATCTGG
TCGCTCCGGAGATGGGTGAGTACGTGGATGGAATGCCGCATCTACGGAAA
GTAAAACTACTCACATGCATGCAGTCAAATAATTATGGAAAGACCGGGAT
CGCATGGTACACAGGATTGTAGGGATGCATATTTGTGTCTGCGTCTGTGA
CCTCGCCCATCTAGGAGGAGTCGGTGTGATTTTGCAATTCCTCTCGTGTC
TTGAAGGACTATATATCCATCTTCTCACTGCACCCACCTCATGTCTTGAT
CCAGAGGCCGCGCCTGCCACTGTAAAGCTGTACCTGAATAAGACTTCTTT
CTCGTTCGACGACGCTGAAAACATTGAGCCCACGCAAGTGCTAGAATTGA
CGGAAGAGGACTACAAGGCAGAAAAGGtgatgagaaaggaaggagaggga
agagaatgTGAAATgggcaggggagggcaggggcgagaagcaaagaaaag
gcggAAAAGATcgtaaggaggggaggaagggaggtagagaggcgagggag
aagggagtaTGGAAGCCGGCTGCATGGAAGAGAACGcaaaatttgaaaat
ttgCATCGTCGTGCTCACCTTCTATTTTCGTTCAGGTCACTCTATTAAAA
TTTGTCAAGTTCCAACGGGTCTCGTCCTTGACCATTTTCGTGGAGAACAA
CAACGGCGCGGACTACACGGCCCTCTCCATGCTGCGTCTCTTCGGCACCC
CGTTGCAGGGCACCGATGTATCCAAGATCCAGAAACAACCGTAAgtgaac
gagggagggagcgagggggaagaaggggagaagggagggagaggaaagcc
gGTAGGTTTTGGAAATAACGGTCTCGGCCTACATGCAACAGGGCCCAAGG
GTAGTGGAGTCTCGCCATATGCCTCTTTCTCGCGATGCACGGAGGAGAAT
AATCATGTAGGAAGAGGTCTGGGGAcgtagggagggagccaatgggatgg
gaaagggaggaatggatcACGCACCCCCCTGGTCTTCCTGGCGTCGCCGA
GGAGGATGTTCGATAggaggcgacgagggagaaatCCGGGTACTTCtact
tg back to topCoding sequence (CDS) from alignment at CM002466.1:872993..874744+ >rna5801 ID=rna5801|Name=rna5801|organism=Nannochloropsis gaditana|type=CDS|length=2685bp|location=Sequence derived from alignment at CM002466.1:872993..874744+ (Nannochloropsis gaditana)
ATGTCAAGTGAAGgtcctccagctccacctccgcctccatcgaaTGAGAT
TGTAGATATTACAGATAAAATTGCCAAGCCTGAGTGCTTCGTGCTGAATG
CGGACCCTAAGTACCCATGGGAAAATTTATTCATGGGCGATGACCGCCTC
CAACTTCGATCGGACACAGATGAACAGTTAATTTTGCACCTTGTATTTTC
CGAGGCCGTTAAAGTCCACAGCCTCAATCTGGTCGCTCCGGAGATGGAGG
CCGCGCCTGCCACTGTAAAGCTGTACCTGAATAAGACTTCTTTCTCGTTC
GACGACGCTGAAAACATTGAGCCCACGCAAGTGCTAGAATTGACGGAAGA
GGACTACAAGGCAGAAAAGGTCACTCTATTAAAATTTGTCAAGTTCCAAC
GGGTCTCGTCCTTGACCATTTTCGTGGAGAACAACAACGGCGCGGACTAC
ACGGCCCTCTCCATGCTGCGTCTCTTCGGCACCCCGTTGCAGGGCACCGA
TGTATCCAAGATCCAGAAACAACCGGCCCAAGGGTAGATGTCAAGTGAAG
gtcctccagctccacctccgcctccatcgaaTGAGATTGTAGATATTACA
GATAAAATTGCCAAGCCTGAGTGCTTCGTGCTGAATGCGGACCCTAAGTA
CCCATGGGAAAATTTATTCATGGGCGATGACCGCCTCCAACTTCGATCGG
ACACAGATGAACAGTTAATTTTGCACCTTGTATTTTCCGAGGCCGTTAAA
GTCCACAGCCTCAATCTGGTCGCTCCGGAGATGGAGGCCGCGCCTGCCAC
TGTAAAGCTGTACCTGAATAAGACTTCTTTCTCGTTCGACGACGCTGAAA
ACATTGAGCCCACGCAAGTGCTAGAATTGACGGAAGAGGACTACAAGGCA
GAAAAGGTCACTCTATTAAAATTTGTCAAGTTCCAACGGGTCTCGTCCTT
GACCATTTTCGTGGAGAACAACAACGGCGCGGACTACACGGCCCTCTCCA
TGCTGCGTCTCTTCGGCACCCCGTTGCAGGGCACCGATGTATCCAAGATC
CAGAAACAACCGGCCCAAGGGTAGATGTCAAGTGAAGgtcctccagctcc
acctccgcctccatcgaaTGAGATTGTAGATATTACAGATAAAATTGCCA
AGCCTGAGTGCTTCGTGCTGAATGCGGACCCTAAGTACCCATGGGAAAAT
TTATTCATGGGCGATGACCGCCTCCAACTTCGATCGGACACAGATGAACA
GTTAATTTTGCACCTTGTATTTTCCGAGGCCGTTAAAGTCCACAGCCTCA
ATCTGGTCGCTCCGGAGATGGAGGCCGCGCCTGCCACTGTAAAGCTGTAC
CTGAATAAGACTTCTTTCTCGTTCGACGACGCTGAAAACATTGAGCCCAC
GCAAGTGCTAGAATTGACGGAAGAGGACTACAAGGCAGAAAAGGTCACTC
TATTAAAATTTGTCAAGTTCCAACGGGTCTCGTCCTTGACCATTTTCGTG
GAGAACAACAACGGCGCGGACTACACGGCCCTCTCCATGCTGCGTCTCTT
CGGCACCCCGTTGCAGGGCACCGATGTATCCAAGATCCAGAAACAACCGG
CCCAAGGGTAGATGTCAAGTGAAGgtcctccagctccacctccgcctcca
tcgaaTGAGATTGTAGATATTACAGATAAAATTGCCAAGCCTGAGTGCTT
CGTGCTGAATGCGGACCCTAAGTACCCATGGGAAAATTTATTCATGGGCG
ATGACCGCCTCCAACTTCGATCGGACACAGATGAACAGTTAATTTTGCAC
CTTGTATTTTCCGAGGCCGTTAAAGTCCACAGCCTCAATCTGGTCGCTCC
GGAGATGGAGGCCGCGCCTGCCACTGTAAAGCTGTACCTGAATAAGACTT
CTTTCTCGTTCGACGACGCTGAAAACATTGAGCCCACGCAAGTGCTAGAA
TTGACGGAAGAGGACTACAAGGCAGAAAAGGTCACTCTATTAAAATTTGT
CAAGTTCCAACGGGTCTCGTCCTTGACCATTTTCGTGGAGAACAACAACG
GCGCGGACTACACGGCCCTCTCCATGCTGCGTCTCTTCGGCACCCCGTTG
CAGGGCACCGATGTATCCAAGATCCAGAAACAACCGGCCCAAGGGTAGAT
GTCAAGTGAAGgtcctccagctccacctccgcctccatcgaaTGAGATTG
TAGATATTACAGATAAAATTGCCAAGCCTGAGTGCTTCGTGCTGAATGCG
GACCCTAAGTACCCATGGGAAAATTTATTCATGGGCGATGACCGCCTCCA
ACTTCGATCGGACACAGATGAACAGTTAATTTTGCACCTTGTATTTTCCG
AGGCCGTTAAAGTCCACAGCCTCAATCTGGTCGCTCCGGAGATGGAGGCC
GCGCCTGCCACTGTAAAGCTGTACCTGAATAAGACTTCTTTCTCGTTCGA
CGACGCTGAAAACATTGAGCCCACGCAAGTGCTAGAATTGACGGAAGAGG
ACTACAAGGCAGAAAAGGTCACTCTATTAAAATTTGTCAAGTTCCAACGG
GTCTCGTCCTTGACCATTTTCGTGGAGAACAACAACGGCGCGGACTACAC
GGCCCTCTCCATGCTGCGTCTCTTCGGCACCCCGTTGCAGGGCACCGATG
TATCCAAGATCCAGAAACAACCGGCCCAAGGGTAG back to top
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