EWM24889.1, cds5786 (CDS) Nannochloropsis gaditana

Overview
NameEWM24889.1
Unique Namecds5786
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:873232..873333 +
Alignment locationCM002466.1:873563..873707 +
Alignment locationCM002466.1:873947..874068 +
Alignment locationCM002466.1:874278..874432 +
Alignment locationCM002466.1:874534..874546 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24889.1
Productthioredoxin-like protein 1
Orig transcript idgnl|cribi|Naga_100116g2.9017.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:873232..873333 +
CM002466.1supercontigCM002466.1:873563..873707 +
CM002466.1supercontigCM002466.1:873947..874068 +
CM002466.1supercontigCM002466.1:874278..874432 +
CM002466.1supercontigCM002466.1:874534..874546 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR010400PITH_dom
Homology
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|553189474|ref|XP_005855009.1| (thioredoxin-like protein 1 [Nannochloropsis gaditana CCMP526] >gi|422294049|gb|EKU21349.1| thioredoxin-like protein 1 [Nannochloropsis gaditana CCMP526] >gi|585106516|gb|EWM24889.1| thioredoxin-like protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 365.155 bits (936), Expect = 7.344e-128
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:    1 MSSEGPPAPPPPPSNEIVDITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQKQPAQG 178
            MSSEGPPAPPPPPSNEIVDITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQKQPAQG
Sbjct:    1 MSSEGPPAPPPPPSNEIVDITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQKQPAQG 178          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|299472516|emb|CBN77301.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 185.267 bits (469), Expect = 1.315e-56
Identity = 87/164 (53.05%), Postives = 112/164 (68.29%), Query Frame = 0
Query:   10 PPPPSNEIVDITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQK 173
            P     E+ DITD + K +C+ LN      WENLF GDDRL L+SD DEQL+LH+ F E VK+HS++ VAP  + AP TVKLYLN+ S  F D +++ P Q LELT+ED  A   ++LKFVKFQRVS L+IFV +NNGA+ + LS LR FGTP+  T +   +K
Sbjct:   16 PKASDLEVRDITDLVCKADCYCLNQLSGATWENLFQGDDRLMLQSDADEQLLLHVGFMETVKLHSIDFVAPSDDTAPLTVKLYLNRNSMGFSDTDDMAPAQTLELTKEDLVAGSASVLKFVKFQRVSGLSIFVADNNGAEQSCLSSLRFFGTPVATTKMGDFKK 179          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|695430512|ref|XP_009530460.1| (hypothetical protein PHYSODRAFT_334858 [Phytophthora sojae] >gi|348673212|gb|EGZ13031.1| hypothetical protein PHYSODRAFT_334858 [Phytophthora sojae])

HSP 1 Score: 174.096 bits (440), Expect = 5.924e-52
Identity = 81/155 (52.26%), Postives = 115/155 (74.19%), Query Frame = 0
Query:   19 DITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQK 173
            D+ + I+  +C+ LN DP  P+ NLFMGD+ LQL+SD DEQL+L++ F +AVKV SLN+VAP+ E AP  +KL++N+ +  F DA ++EPTQ +EL EED   E    L+FVKFQRV S+T+FVE NNGA+ TA+S L+ FG  L GT++++++K
Sbjct:   45 DLKEAISTKDCYCLNEDPNKPFGNLFMGDETLQLKSDADEQLMLYIEFQDAVKVFSLNIVAPQGEEAPRVIKLFVNRPNLGFSDAGDVEPTQTIELKEEDLLPENDVELRFVKFQRVKSITVFVEENNGAEETAISSLKFFGERLAGTNMNELKK 199          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|301102347|ref|XP_002900261.1| (thioredoxin-like protein, putative [Phytophthora infestans T30-4] >gi|262102413|gb|EEY60465.1| thioredoxin-like protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 170.629 bits (431), Expect = 4.257e-51
Identity = 80/155 (51.61%), Postives = 112/155 (72.26%), Query Frame = 0
Query:   19 DITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQK 173
            D+ + I+  +C+ LN DP  P+ NLF GDD L L+SD DEQL+L+L F +AVK+ SLN+VAP+ E AP  +KLY+N+ +  F DA ++EPTQ +EL EED   E    L+FVKFQRV S+++FVE N GA+ T LS L+ FG PL GT++++++K
Sbjct:   15 DLKESISTKDCYCLNEDPNKPFRNLFAGDDSLVLKSDADEQLMLYLEFQDAVKIFSLNIVAPQGEEAPRVIKLYVNRPNLGFSDAGDVEPTQTIELKEEDLLPENDVELRFVKFQRVKSVSVFVEENYGAEETVLSSLKFFGEPLAGTNMNELKK 169          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|568027194|gb|ETM01159.1| (hypothetical protein L917_02222 [Phytophthora parasitica])

HSP 1 Score: 170.244 bits (430), Expect = 6.816e-51
Identity = 80/155 (51.61%), Postives = 112/155 (72.26%), Query Frame = 0
Query:   19 DITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQK 173
            D+ + I+  +C+ LN +P  P+ NLFMGDD L L+SD DEQL+L+L F +AVKV SLN+VAP+ E AP  +KLY+N+    F DA +++PTQ +EL +ED   E    L+FVKFQRV SLT+FVE NNGA+ T +S L+ FG  L GT++++++K
Sbjct:   14 DLQEAISTKDCYCLNENPNKPFRNLFMGDDSLVLKSDADEQLMLYLEFQDAVKVFSLNIVAPQGEEAPRVIKLYVNRPHLGFSDAGDVDPTQTIELKDEDLLPENDVELRFVKFQRVKSLTVFVEENNGAEETVISSLKFFGERLAGTNMNELKK 168          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|675181589|ref|XP_008899679.1| (hypothetical protein PPTG_07263 [Phytophthora parasitica INRA-310] >gi|566031894|gb|ETI54805.1| hypothetical protein F443_02444 [Phytophthora parasitica P1569] >gi|567969580|gb|ETK94664.1| hypothetical protein L915_02330 [Phytophthora parasitica] >gi|567997984|gb|ETL48063.1| hypothetical protein L916_02288 [Phytophthora parasitica] >gi|568057686|gb|ETM54340.1| hypothetical protein L914_02315 [Phytophthora parasitica] >gi|568100355|gb|ETN15054.1| hypothetical protein PPTG_07263 [Phytophthora parasitica INRA-310] >gi|570335623|gb|ETO83571.1| hypothetical protein F444_02431 [Phytophthora parasitica P1976] >gi|570959663|gb|ETP24642.1| hypothetical protein F441_02395 [Phytophthora parasitica CJ01A1] >gi|570995858|gb|ETP52605.1| hypothetical protein F442_02411 [Phytophthora parasitica P10297] >gi|970642596|gb|KUF84218.1| Thioredoxin protein 1 [Phytophthora nicotianae] >gi|970653177|gb|KUF91696.1| hypothetical protein AM588_10004095 [Phytophthora nicotianae])

HSP 1 Score: 169.859 bits (429), Expect = 1.187e-50
Identity = 80/155 (51.61%), Postives = 112/155 (72.26%), Query Frame = 0
Query:   19 DITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQK 173
            D+ + I+  +C+ LN +P  P+ NLFMGDD L L+SD DEQL+L+L F +AVKV SLN+VAP+ E AP  +KLY+N+    F DA +++PTQ +EL +ED   E    L+FVKFQRV SLT+FVE NNGA+ T +S L+ FG  L GT++++++K
Sbjct:   15 DLQEAISTKDCYCLNENPNKPFRNLFMGDDSLVLKSDADEQLMLYLEFQDAVKVFSLNIVAPQGEEAPRVIKLYVNRPHLGFSDAGDVDPTQTIELKDEDLLPENDVELRFVKFQRVKSLTVFVEENNGAEETVISSLKFFGERLAGTNMNELKK 169          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|301089473|ref|XP_002895034.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103701|gb|EEY61753.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 167.933 bits (424), Expect = 5.713e-50
Identity = 79/155 (50.97%), Postives = 111/155 (71.61%), Query Frame = 0
Query:   19 DITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQK 173
            D+ + I+  +C+ LN DP  P+ NLF GDD L L+SD DEQL+L+L F +AVK+ SLN+VAP+ E AP  +KLY+N+ +  F DA ++EPTQ +EL EED   E    L+FVKFQRV S+++FVE N GA+ T LS L+ FG  L GT++++++K
Sbjct:   15 DLKESISTKDCYCLNEDPNKPFRNLFAGDDSLVLKSDADEQLMLYLEFQDAVKIFSLNIVAPQGEEAPRVIKLYVNRPNLGFSDAGDVEPTQTIELKEEDLLPENDVELRFVKFQRVKSVSVFVEENYGAEETVLSSLKFFGETLAGTNMNELKK 169          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|568027195|gb|ETM01160.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 165.236 bits (417), Expect = 4.328e-49
Identity = 79/146 (54.11%), Postives = 105/146 (71.92%), Query Frame = 0
Query:   19 DITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQ 164
            D+ + I+  +C+ LN +P  P+ NLFMGDD L L+SD DEQL+L+L F +AVKV SLN+VAP+ E AP  +KLY+N+    F DA +++PTQ +EL +ED   E    L+FVKFQRV SLT+FVE NNGA+ T +S L+ FGT LQ
Sbjct:   14 DLQEAISTKDCYCLNENPNKPFRNLFMGDDSLVLKSDADEQLMLYLEFQDAVKVFSLNIVAPQGEEAPRVIKLYVNRPHLGFSDAGDVDPTQTIELKDEDLLPENDVELRFVKFQRVKSLTVFVEENNGAEETVISSLKFFGTLLQ 159          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|675181591|ref|XP_008899680.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|566031895|gb|ETI54806.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567969581|gb|ETK94665.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567997985|gb|ETL48064.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568057687|gb|ETM54341.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568100356|gb|ETN15055.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|570335624|gb|ETO83572.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570959664|gb|ETP24643.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570995859|gb|ETP52606.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 164.851 bits (416), Expect = 5.930e-49
Identity = 79/146 (54.11%), Postives = 105/146 (71.92%), Query Frame = 0
Query:   19 DITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQ 164
            D+ + I+  +C+ LN +P  P+ NLFMGDD L L+SD DEQL+L+L F +AVKV SLN+VAP+ E AP  +KLY+N+    F DA +++PTQ +EL +ED   E    L+FVKFQRV SLT+FVE NNGA+ T +S L+ FGT LQ
Sbjct:   15 DLQEAISTKDCYCLNENPNKPFRNLFMGDDSLVLKSDADEQLMLYLEFQDAVKVFSLNIVAPQGEEAPRVIKLYVNRPHLGFSDAGDVDPTQTIELKDEDLLPENDVELRFVKFQRVKSLTVFVEENNGAEETVISSLKFFGTLLQ 160          
BLAST of EWM24889.1 vs. NCBI_GenBank
Match: gi|953486315|emb|CEG49646.1| (Thioredoxin-like protein [Plasmopara halstedii])

HSP 1 Score: 163.696 bits (413), Expect = 2.435e-48
Identity = 75/155 (48.39%), Postives = 113/155 (72.90%), Query Frame = 0
Query:   19 DITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQK 173
            D+ D I+  +C+ LN DP  P+ NLF G++ L L+SD DEQL+L++ F +AVK+ S+N+VAP+ + AP  +KL++N+ +  F DA ++E TQ +EL +ED   E    L+FVKFQRV+S++IFVE NNGAD T +S L+ FG PL GT++++++K
Sbjct:   15 DLKDAISIKDCYCLNEDPNKPFRNLFAGNETLVLKSDADEQLLLYIEFQDAVKLFSINIVAPQTDEAPRVIKLFVNRPNLGFSDATDVEATQTIELKKEDLVPENDIELRFVKFQRVTSISIFVEENNGADETIISSLKFFGEPLAGTNMNELKK 169          
The following BLAST results are available for this feature:
BLAST of EWM24889.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553189474|ref|XP_005855009.1|7.344e-128100.00thioredoxin-like protein 1 [Nannochloropsis gadita... [more]
gi|299472516|emb|CBN77301.1|1.315e-5653.05conserved unknown protein [Ectocarpus siliculosus][more]
gi|695430512|ref|XP_009530460.1|5.924e-5252.26hypothetical protein PHYSODRAFT_334858 [Phytophtho... [more]
gi|301102347|ref|XP_002900261.1|4.257e-5151.61thioredoxin-like protein, putative [Phytophthora i... [more]
gi|568027194|gb|ETM01159.1|6.816e-5151.61hypothetical protein L917_02222 [Phytophthora para... [more]
gi|675181589|ref|XP_008899679.1|1.187e-5051.61hypothetical protein PPTG_07263 [Phytophthora para... [more]
gi|301089473|ref|XP_002895034.1|5.713e-5050.97conserved hypothetical protein [Phytophthora infes... [more]
gi|568027195|gb|ETM01160.1|4.328e-4954.11hypothetical protein, variant 1 [Phytophthora para... [more]
gi|675181591|ref|XP_008899680.1|5.930e-4954.11hypothetical protein, variant 1 [Phytophthora para... [more]
gi|953486315|emb|CEG49646.1|2.435e-4848.39Thioredoxin-like protein [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5801rna5801Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications