rna5795, rna5795 (mRNA) Nannochloropsis gaditana

Overview
Namerna5795
Unique Namerna5795
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1533
Alignment locationCM002466.1:861035..861739 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100116g6.9019.mrna
Orig protein idgnl|cribi|Naga_100116g6.9019
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:861035..861739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100116g6gene5597Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5795rna5795-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24891.1cds5780Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5795 ID=rna5795|Name=rna5795|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp
ATGTTGACAAGAGAGGAGAAGGTCGCAGGCTCACATGCAACTCCAGCGTT
GTCGGCGGCAGAGACTTTTGATTTCGAGCTCAGTTGTGTGAAAGGCGCAA
CTGGATGGAAGGAGGCGGATTGCGACAAAGCAGACAACCAGGTGCATGTC
ACGCACCCCTGGATCCCTCGTGACAACACCGTGGAAGTCTTGAGAGATGA
CAGTGGCGAGGGCAATTGTATTAACGACGATCAGCTTCCTGCCATTCATC
CGTCCACCCAAATTACTGGTGCCTCAGAGCCTTCCGAGGCAAGAATTCTG
CAATCTTCAGCGTTCTTGGCTAGTACGCCCGAACTTCAGCTGGAAAAATG
CAAAAGTCTGATACTAAACGCCCTGGTGCCAAAGGCGCGGGTCTTAGGAT
CACAAAGCGTCACTCAAGGGGAAAAATGGGACCTGACTTTTCGTCTCGAG
CGATTGTTCACCTACGGGGTAAAAGCGAGCCAGTGTAGACGGGCGCGCAG
CCACAGGAATAAAGAGGCGGGCTGGCTGCTGAAAGAGAGTGTCGACCGTG
CCATTTGGGACGCGCTTGGCACCATCGCGACGGACAAGCAGCAGCCGCCG
AAAGCGCACGAGGAGGAGAAGAAGAAAAAGAAGTTCAAGAAAAAGAAGAA
AGACAAGAAGCTGACTCCTTCCCGACATAGCGGGAGTGACACCACAGTGG
TTTCGGCACTCACCCACGTCTTGGCCCATACCCTCGCGCAGGATCTGGAC
GCCGCGTTGGCGAGTCGCGTGAGTGTGCTGGGGTTGATCTGCCTGGTGGA
GAGGGGCCTGACACCGATGTTCCTCTCCCTTTGGCTCAATGCTGTGAGGG
CCTCCGGCTGCCTAAACGCGCTGTTTGCTGCCTCTGAAATGCCCGACTCT
ACCCATCAGGAGATCACGCCGCTGCCAGTCCATGAGGACTGCCAGGTCAT
TGCCGCATGCTTGAACCGATCCTTGTCGGACATTTTCCGAGGCCACACGC
GTGCGGTCAAACCCAAGTGCATCGTCACTTTCCTGGACGTCACGAGTCCT
GCCTTACCCTTTTTGCCCATCCTCCGCGACCCGGTCAGCCAGTTATACGT
GCAACGCCTCTTGAATGGGCTCGGGGGGGTGGCCGAAGCCAAGGCAGGCG
GGGCCCTGGGTGCCTACCTGCGGGGCCCGCCATCTCTCCACGCGCACTTC
TTCCGCCTGGTGCTCTTGTCGACTCCGCCGGACGTGGCGTTGGACATTTT
GAAACGCTACCAAGCGCAACATGGAGCGGTAGCCTTGCAACCCTTGGGTA
TGACAGAGGCGTTGCTGCAAGTAGTCATGGCCAGAGGCCTCTATCGCTTT
GCCTATCTGGCCGCCCTGGACATGAATGTGTTGGATACCTATCCCGTTAT
CGAACGAGTGTACAGAGAGGAGAAGATCAAGCAATTGGTCACGCGGGGGA
AATGGCAATTTGCTGTCTTGATGCTGGATCAACTCCGGCAGCGGACGGCA
AGGAAATGGAGATCTATGTGGTCCACGACCTAG
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protein sequence of rna5795

>rna5795-protein ID=rna5795-protein|Name=rna5795|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MDTYADRHTTIDMIKGQRERDQKVSPLLQAVRYGGGVDAHARARQTSRFE
GRDGDGKDLAAGIGWKPLAREEGILDPTHEGDGDIADLSFLVRDGIELRG
LVNS
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mRNA from alignment at CM002466.1:861035..861739+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5795 ID=rna5795|Name=rna5795|organism=Nannochloropsis gaditana|type=mRNA|length=705bp|location=Sequence derived from alignment at CM002466.1:861035..861739+ (Nannochloropsis gaditana)
ATGGACACGTACGCCGATCGTCACACCACCATAGACATGGTACGTGACTC
GAACAGCTCAAGAGGAAATCGTCCGAAGAATTCCCCACATACGAGGTACA
CTGACAACAAGACCCGGCGATATAAACCTATGAATAAATTTTCACATACA
CATGACATGATCTGGACAGATCAAGGGACAAAGGGAACGCGACCAAAAgg
tctccccccttctccaagCAGGTACGCTTTCATTCGTACACAATGACCTT
ATTCGGCATTCACCACGGCACAAACACAGAACATAATTGGGACAAATCAT
GGACTTATTCTACGGTACATAATTATTTACTAATAACTAAGCTTCCCCCT
GAGAGAATAAGGGGACACACACGTGTAGGCATATTGGCGCTACAAAGGCC
CTGCCTTGAGGCTACTGCCGAGACATAATCGACTGTCGCACACAAGTGGC
CTTGCGGGCATCGATCACGTACTCCGTGAAGTCCGATACGGGGGCGGGGT
TGATGCCCACGCGCGTGCACGACAGACCAGCCGTTTCGAGGGACGTGACG
GCGATGGAAAGGATCTTGCTGCCGGTATTGGCTGGAAACCtctggccagg
gaggagggtataCTCGACCCGACCCACGAGGGAGATGGTGATATTGCGga
cctttcctttcttgtccGTGACGGGATAGAATTGCGTGGACTGGTAAATA
GCTGA
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Coding sequence (CDS) from alignment at CM002466.1:861035..861739+

>rna5795 ID=rna5795|Name=rna5795|organism=Nannochloropsis gaditana|type=CDS|length=945bp|location=Sequence derived from alignment at CM002466.1:861035..861739+ (Nannochloropsis gaditana)
ATGGACACGTACGCCGATCGTCACACCACCATAGACATGATCAAGGGACA
AAGGGAACGCGACCAAAAggtctccccccttctccaagCAGTCCGATACG
GGGGCGGGGTTGATGCCCACGCGCGTGCACGACAGACCAGCCGTTTCGAG
GGACGTGACGGCGATGGAAAGGATCTTGCTGCCGGTATTGGCTGGAAACC
tctggccagggaggagggtataCTCGACCCGACCCACGAGGGAGATGGTG
ATATTGCGgacctttcctttcttgtccGTGACGGGATAGAATTGCGTGGA
CTGGTAAATAGCTGAATGGACACGTACGCCGATCGTCACACCACCATAGA
CATGATCAAGGGACAAAGGGAACGCGACCAAAAggtctccccccttctcc
aagCAGTCCGATACGGGGGCGGGGTTGATGCCCACGCGCGTGCACGACAG
ACCAGCCGTTTCGAGGGACGTGACGGCGATGGAAAGGATCTTGCTGCCGG
TATTGGCTGGAAACCtctggccagggaggagggtataCTCGACCCGACCC
ACGAGGGAGATGGTGATATTGCGgacctttcctttcttgtccGTGACGGG
ATAGAATTGCGTGGACTGGTAAATAGCTGAATGGACACGTACGCCGATCG
TCACACCACCATAGACATGATCAAGGGACAAAGGGAACGCGACCAAAAgg
tctccccccttctccaagCAGTCCGATACGGGGGCGGGGTTGATGCCCAC
GCGCGTGCACGACAGACCAGCCGTTTCGAGGGACGTGACGGCGATGGAAA
GGATCTTGCTGCCGGTATTGGCTGGAAACCtctggccagggaggagggta
taCTCGACCCGACCCACGAGGGAGATGGTGATATTGCGgacctttccttt
cttgtccGTGACGGGATAGAATTGCGTGGACTGGTAAATAGCTGA
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Synonyms
Publications