rna5782, rna5782 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5782
Unique Name	rna5782
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1083
Alignment location	CM002466.1:831855..833171 +

Link to JBrowse

Properties


Property Name	Value
Product	short-chain dehydrogenase reductase sdr
Orig transcript id	gnl\|cribi\|Naga_100116g18.9024.mrna
Orig protein id	gnl\|cribi\|Naga_100116g18.9024
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:831855..833171 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100116g18	gene5585	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5782	rna5782-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24896.1	cds5767	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:831855..833171+
coding sequence from alignment at CM002466.1:831855..833171+

mRNA sequence

>rna5782 ID=rna5782|Name=rna5782|organism=Nannochloropsis gaditana|type=mRNA|length=1083bp
ATGCCCCTTTATCCACAGCTTACCATGCCTCCGAAGAAACGTCATGCTGC
TAAAAATGGAAAAATCAATACTGAAAGCCCTGCAGGGAAGAAGAGTAGAG
TCGCAGCTACCTCTCCAGGCAACCAGACAAGCATTACTGCTTTCTTTGCT
GAGGGGAGTGGAGGTAAAGCTACCGCGTCGTCTAAAGGAAAGTTTTTAAC
AGACCTCAAAACAAACCCAGCGAATGTCATCGCAAACGAACGCGTTGATA
GACCGCGAGAGATAGAAATGGTGGAGCTGCTTACCTCGGAAGATGAGGGA
AGCCGTGAGAAGCCCGAGGTAGAGAATGTCCGACTTCCGCAGCTCGACAC
GGAGGACAGAGCAGTCCAGGATCAAGCGCAGGCCCAAAATCTTACAGAGG
CCATGGAGGACCTACCAGATCTAGAAAATACAGAAGGAAACAGGTCGAGT
CCGGGGGACGAAGGCATCGTTGCCCCACCGCCTGCTTCCACGGCCCCCTC
CTCGCCCTCCGCCAGTGCCCTCACCGGCAGCCCCGTCGATCTTCCCTGCA
CGCGTTACGACGCCGTGTCCGACGCCTGCTGGAGCGAGAAGACACCCGCG
CCGTACCTGCACCTAGCCTGGGCGTTCGAGCTCCTGTGCTCGACCACCAA
ACGGCTGACAAAAGCCGACGTGCTCGTGAACACCTTCCGGTCCCTGATCG
CCTTGGCGCCTTCCGACCTCCTCCCAGCGGTCTACCTCTCCAGCAACAAG
CTGAGCTCCTCCTTTCAAGGTATCGACATCAATGTGGGCGGATCCACCGT
CTCGGCAGCCGTGGTTCAAGCCACGGGCACGTCGTCGGAGAAACTCAAAC
AGCTGTACATCGAGCTCGGGGACCTCGGCGACGTGGCTCAGGCCCTCCGC
GTCCGGCAGCGCATGCTCGTTCCCCCCAGCCCCCTCAGCATCCGCGGGGT
CTACCGCACCATCGTCGACATGGCCAACATGAAAGGACAAGGCTGTGAAG
GACGGAAACGGGCCATGATGGTTCGCCTCATTCGCTCATGCCGGGGACCG
GAGGCCAGATTCTTAGCGTCCTGTCGGCTTTAG

protein sequence of rna5782

>rna5782-protein ID=rna5782-protein|Name=rna5782|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQS
LEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQ
RVLGKQGPHSLETFLKVGRETESKRMRKLPADENGIRGVIINTASIAAYD
GQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALP
EHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMP
PS

mRNA from alignment at CM002466.1:831855..833171+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5782 ID=rna5782|Name=rna5782|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp|location=Sequence derived from alignment at CM002466.1:831855..833171+ (Nannochloropsis gaditana)
ATGGCAATGAGACGCGTTACAGCCCTTGTTACGGGTGCAGCATCAGGTTT
GGGGAACGCCACTGCTCAGCGTTTTTTACAACAGGTCCGAATACGTTCCA
CGTATAAAAATGTTTACACATACCTAACGTATATATACGACTAGTAACTC
TAATCGCGCTTTTTTTTATCGCAGGGCGCTCGTGTCATCCTAGCGGATCT
GCCAACCAAAAACTCCGCCGCGCTTGCTTCTCTCCaaagcctggaggaag
aggaacgctCCCGAAGCGTTTTCGCAGGAGTCGATGTACGTTAAAAATAC
CTCCCACAGAATAAATGTGCAATCACTAATGCCTCcattcttctttttcc
gaaAATGTAGGTACTGGAAAGTTCTCTGGTCGCAGCTGGAGTCGACTCAG
CCCTCTCCAACTGGGGCCAAAGCGTAAATGTGGTGGTAAACTGCGCAGGT
ATCGCTGTAGCTCAACGCGTGTTGGGCAAGCAGGGGCCCCATTCACTCGA
AACGTTTCTGAAGGTAGGCAGGGAAACGGAGTCAAAGAGGTAAAGCATGG
CTCTGACGCATGGCCACATATGCGTCCAAGTAGGGCTCGATGAATATGCA
ggctccccttctccctttaGTGTTCCTTCGTTATCGCTCTCGTGCATGAA
AAAGGCAGGCCATCTTAGATCGAAGTTCTATATCATTACATCCCGAAATC
TCAACAGGTGTTGACGGTGAACGCTGGCGGCACTTTCAATGTGGCTCGTC
TCGCCGCTGAAAGGCAAGGAGTATGTTTTTTTTATTCCCCAGTGCACTAC
CTTcactctctttctctctttatTCCCTCTAATCTCATTCTACTTCCGCG
TCTAACCTACCCTCTGCTTTCTATTCTTTCGGGTGTAAAAACCGTTTTTC
TTTACGTCAACGTACCACTCCAATTACGTCAGAATGCGCAAACTCCCTGC
CGACGAGAATGGCATCCGAGGTGTGATCATCAATACCGCTAGTATCGCTG
CATATGACGGACAGATTGGACAGACTGCCTACGCCGCCTCGAAAGCCGCT
GTAGCTGGTCTTACACTTCCTCTAGCTCGTGACTTAGCCCGAGACGGGAT
CCGCGTCGTTTCTATCGCCCCTGGATTGTTTCGCACGCCAATGTTAGCGG
CTCTTCCTGAACATGTGCAGACTGAATTGGGTCAGACTGTACCTTTACCG
AAGCGTTTGGGAGACCCCATGGAGTTTGCTATGCTGGCACAGGCCGTAGT
GGAAAATCCGATGATCAATGGGGAAGTGATTCGCTTGGATGGGGCATTGc
gcatgcctccttcctga

Coding sequence (CDS) from alignment at CM002466.1:831855..833171+

>rna5782 ID=rna5782|Name=rna5782|organism=Nannochloropsis gaditana|type=CDS|length=3036bp|location=Sequence derived from alignment at CM002466.1:831855..833171+ (Nannochloropsis gaditana)
ATGGCAATGAGACGCGTTACAGCCCTTGTTACGGGTGCAGCATCAGGTTT
GGGGAACGCCACTGCTCAGCGTTTTTTACAACAGGGCGCTCGTGTCATCC
TAGCGGATCTGCCAACCAAAAACTCCGCCGCGCTTGCTTCTCTCCaaagc
ctggaggaagaggaacgctCCCGAAGCGTTTTCGCAGGAGTCGATGTACT
GGAAAGTTCTCTGGTCGCAGCTGGAGTCGACTCAGCCCTCTCCAACTGGG
GCCAAAGCGTAAATGTGGTGGTAAACTGCGCAGGTATCGCTGTAGCTCAA
CGCGTGTTGGGCAAGCAGGGGCCCCATTCACTCGAAACGTTTCTGAAGGT
AGGCAGGGAAACGGAGTCAAAGAGAATGCGCAAACTCCCTGCCGACGAGA
ATGGCATCCGAGGTGTGATCATCAATACCGCTAGTATCGCTGCATATGAC
GGACAGATTGGACAGACTGCCTACGCCGCCTCGAAAGCCGCTGTAGCTGG
TCTTACACTTCCTCTAGCTCGTGACTTAGCCCGAGACGGGATCCGCGTCG
TTTCTATCGCCCCTGGATTGTTTCGCACGCCAATGTTAGCGGCTCTTCCT
GAACATGTGCAGACTGAATTGGGTCAGACTGTACCTTTACCGAAGCGTTT
GGGAGACCCCATGGAGTTTGCTATGCTGGCACAGGCCGTAGTGGAAAATC
CGATGATCAATGGGGAAGTGATTCGCTTGGATGGGGCATTGcgcatgcct
ccttcctgaATGGCAATGAGACGCGTTACAGCCCTTGTTACGGGTGCAGC
ATCAGGTTTGGGGAACGCCACTGCTCAGCGTTTTTTACAACAGGGCGCTC
GTGTCATCCTAGCGGATCTGCCAACCAAAAACTCCGCCGCGCTTGCTTCT
CTCCaaagcctggaggaagaggaacgctCCCGAAGCGTTTTCGCAGGAGT
CGATGTACTGGAAAGTTCTCTGGTCGCAGCTGGAGTCGACTCAGCCCTCT
CCAACTGGGGCCAAAGCGTAAATGTGGTGGTAAACTGCGCAGGTATCGCT
GTAGCTCAACGCGTGTTGGGCAAGCAGGGGCCCCATTCACTCGAAACGTT
TCTGAAGGTAGGCAGGGAAACGGAGTCAAAGAGAATGCGCAAACTCCCTG
CCGACGAGAATGGCATCCGAGGTGTGATCATCAATACCGCTAGTATCGCT
GCATATGACGGACAGATTGGACAGACTGCCTACGCCGCCTCGAAAGCCGC
TGTAGCTGGTCTTACACTTCCTCTAGCTCGTGACTTAGCCCGAGACGGGA
TCCGCGTCGTTTCTATCGCCCCTGGATTGTTTCGCACGCCAATGTTAGCG
GCTCTTCCTGAACATGTGCAGACTGAATTGGGTCAGACTGTACCTTTACC
GAAGCGTTTGGGAGACCCCATGGAGTTTGCTATGCTGGCACAGGCCGTAG
TGGAAAATCCGATGATCAATGGGGAAGTGATTCGCTTGGATGGGGCATTG
cgcatgcctccttcctgaATGGCAATGAGACGCGTTACAGCCCTTGTTAC
GGGTGCAGCATCAGGTTTGGGGAACGCCACTGCTCAGCGTTTTTTACAAC
AGGGCGCTCGTGTCATCCTAGCGGATCTGCCAACCAAAAACTCCGCCGCG
CTTGCTTCTCTCCaaagcctggaggaagaggaacgctCCCGAAGCGTTTT
CGCAGGAGTCGATGTACTGGAAAGTTCTCTGGTCGCAGCTGGAGTCGACT
CAGCCCTCTCCAACTGGGGCCAAAGCGTAAATGTGGTGGTAAACTGCGCA
GGTATCGCTGTAGCTCAACGCGTGTTGGGCAAGCAGGGGCCCCATTCACT
CGAAACGTTTCTGAAGGTAGGCAGGGAAACGGAGTCAAAGAGAATGCGCA
AACTCCCTGCCGACGAGAATGGCATCCGAGGTGTGATCATCAATACCGCT
AGTATCGCTGCATATGACGGACAGATTGGACAGACTGCCTACGCCGCCTC
GAAAGCCGCTGTAGCTGGTCTTACACTTCCTCTAGCTCGTGACTTAGCCC
GAGACGGGATCCGCGTCGTTTCTATCGCCCCTGGATTGTTTCGCACGCCA
ATGTTAGCGGCTCTTCCTGAACATGTGCAGACTGAATTGGGTCAGACTGT
ACCTTTACCGAAGCGTTTGGGAGACCCCATGGAGTTTGCTATGCTGGCAC
AGGCCGTAGTGGAAAATCCGATGATCAATGGGGAAGTGATTCGCTTGGAT
GGGGCATTGcgcatgcctccttcctgaATGGCAATGAGACGCGTTACAGC
CCTTGTTACGGGTGCAGCATCAGGTTTGGGGAACGCCACTGCTCAGCGTT
TTTTACAACAGGGCGCTCGTGTCATCCTAGCGGATCTGCCAACCAAAAAC
TCCGCCGCGCTTGCTTCTCTCCaaagcctggaggaagaggaacgctCCCG
AAGCGTTTTCGCAGGAGTCGATGTACTGGAAAGTTCTCTGGTCGCAGCTG
GAGTCGACTCAGCCCTCTCCAACTGGGGCCAAAGCGTAAATGTGGTGGTA
AACTGCGCAGGTATCGCTGTAGCTCAACGCGTGTTGGGCAAGCAGGGGCC
CCATTCACTCGAAACGTTTCTGAAGGTAGGCAGGGAAACGGAGTCAAAGA
GAATGCGCAAACTCCCTGCCGACGAGAATGGCATCCGAGGTGTGATCATC
AATACCGCTAGTATCGCTGCATATGACGGACAGATTGGACAGACTGCCTA
CGCCGCCTCGAAAGCCGCTGTAGCTGGTCTTACACTTCCTCTAGCTCGTG
ACTTAGCCCGAGACGGGATCCGCGTCGTTTCTATCGCCCCTGGATTGTTT
CGCACGCCAATGTTAGCGGCTCTTCCTGAACATGTGCAGACTGAATTGGG
TCAGACTGTACCTTTACCGAAGCGTTTGGGAGACCCCATGGAGTTTGCTA
TGCTGGCACAGGCCGTAGTGGAAAATCCGATGATCAATGGGGAAGTGATT
CGCTTGGATGGGGCATTGcgcatgcctccttcctga

Synonyms

Publications