EWM24896.1, cds5767 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|585106523|gb|EWM24896.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 503.056 bits (1294), Expect = 6.645e-180 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETESKRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPPS 252
MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETESKRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPPS
Sbjct: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETESKRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPPS 252
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|673033866|ref|XP_008870894.1| (hypothetical protein H310_07300 [Aphanomyces invadans] >gi|574473756|gb|ETW00759.1| hypothetical protein H310_07300 [Aphanomyces invadans]) HSP 1 Score: 276.559 bits (706), Expect = 2.509e-90 Identity = 148/261 (56.70%), Postives = 178/261 (68.20%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETES----------KRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
M++ ALVTGAASGLG ATA+R ++ GA+VIL DLPT + Q++ + F+ DV V A +D A S +G+SV++ VNCAGIAVA R + K+G H L F V S +RM K D G RGVI+NTASIAAYDGQIGQ AYAASKAA+ G+TLP+ARDL+ GIR+ +IAPGLFRTP+LA LPE VQ ELGQTVP P RLG P EFA L Q++VEN M+NGEVIRLDGALRMPP
Sbjct: 1 MSLANRVALVTGAASGLGRATAERLVKAGAQVILCDLPTSDG------QNVARAIGPNAHFSPTDVTNEDQVTAALDLAESAFGKSVDIAVNCAGIAVAARTVSKKGAHPLYQFQNVLNVNVSGTFNVIRLAAERMSKSKGDSTGERGVIVNTASIAAYDGQIGQVAYAASKAAIVGMTLPIARDLSSSGIRINTIAPGLFRTPLLAGLPEQVQNELGQTVPFPSRLGKPEEFAQLVQSIVENRMLNGEVIRLDGALRMPP 255
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|698786318|ref|XP_009826191.1| (hypothetical protein H257_03689 [Aphanomyces astaci] >gi|574119019|gb|ETV84499.1| hypothetical protein H257_03689 [Aphanomyces astaci]) HSP 1 Score: 272.707 bits (696), Expect = 6.152e-89 Identity = 147/261 (56.32%), Postives = 177/261 (67.82%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETES----------KRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
M++ ALVTGAASGLG ATA+R ++ GA+VIL DLPT + Q++ + F+ DV V A +D A S +G+SV++ VNCAGIAVA R + K+G H L F V S +RM K D G RGVIINTASIAAYDGQIGQ AYAASKAA+ G+TLP+ARDL+ GIRV +IAPGLFRTP+LA LPE VQ ELG TVP P RLG P E+A L Q+++EN M+NGEVIRLDGALRMPP
Sbjct: 1 MSLANRVALVTGAASGLGRATAERLVKAGAQVILCDLPTSDG------QNVARNIGPNAHFSPTDVTSEEEVTAALDLAESAFGKSVDIAVNCAGIAVAARTVSKKGAHPLYQFQNVLNVNVSGTFNVIRLAAERMSKTKGDSAGERGVIINTASIAAYDGQIGQVAYAASKAAIVGMTLPIARDLSTSGIRVNTIAPGLFRTPLLAGLPEQVQNELGLTVPFPSRLGKPEEYAQLVQSIIENRMLNGEVIRLDGALRMPP 255
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|669136572|ref|XP_008603854.1| (3-hydroxyacyl-CoA dehydrogenase type-2 [Saprolegnia diclina VS20] >gi|530744189|gb|EQC42431.1| 3-hydroxyacyl-CoA dehydrogenase type-2 [Saprolegnia diclina VS20]) HSP 1 Score: 270.396 bits (690), Expect = 6.869e-88 Identity = 142/261 (54.41%), Postives = 180/261 (68.97%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETES----------KRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
M + R ALVTGAASGLG ATA+R L+QGA+VI+ DLPT + Q L + F+ DV + V+A +D A S +G+ +++ VNCAGIAVA + L K+GPH L F +V S +RM K +G RGVIINTASIAAY+GQ+GQ AYAASK A+ G+TLP+AR+LA+ GIR +IAPGLFRTP+LA LP+ VQ +LG+TVP P RLG P ++A L Q++VEN MINGEVIR+DGALRMPP
Sbjct: 1 MTLARRVALVTGAASGLGRATAERLLKQGAQVIICDLPTSDG------QELARQLGPNCHFSPTDVTDEEQVSAALDLAESAFGKPIDIAVNCAGIAVAAKTLSKKGPHPLYQFQQVLNINTSGTFNVIRLAAERMSKTTPGADGERGVIINTASIAAYEGQVGQVAYAASKGAIVGITLPVARELAQYGIRCNTIAPGLFRTPLLAGLPDAVQEQLGKTVPFPSRLGHPEDYAQLVQSIVENKMINGEVIRIDGALRMPP 255
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|813143021|ref|XP_012199486.1| (3-hydroxyacyl-CoA dehydrogenase type-2 [Saprolegnia parasitica CBS 223.65] >gi|641535991|gb|KDO29891.1| 3-hydroxyacyl-CoA dehydrogenase type-2 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 270.011 bits (689), Expect = 9.024e-88 Identity = 142/261 (54.41%), Postives = 180/261 (68.97%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETES----------KRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
MA+ R ALVTGAASGLG ATA+R L+QGA+V++ DLPT + Q L + F+ DV + V+A +D A S +G+ +++ VNCAGIAVA + L K+GPH L F +V S +RM K +G RGVIINTASIAAY+GQ+GQ AYAASK A+ G+TLP+AR+LA GIR +IAPGLFRTP+LA LP+ VQ +LG+TVP P RLG P ++A L Q++VEN MINGEVIR+DGALRMPP
Sbjct: 1 MALARRVALVTGAASGLGRATAERLLKQGAQVVICDLPTSDG------QELARQLGPNCHFSPTDVTDEEQVSAALDLAESAFGKPIDIAVNCAGIAVAAKTLSKKGPHPLYQFQQVLNINTSGTFNVIRLAAERMSKTTPGADGERGVIINTASIAAYEGQVGQVAYAASKGAIVGMTLPVARELAPYGIRCNTIAPGLFRTPLLAGLPDAVQEQLGKTVPFPSRLGHPEDYAQLVQSIVENKMINGEVIRIDGALRMPP 255
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|1173941474|gb|OQR90629.1| (3-hydroxyacyl-CoA dehydrogenase [Achlya hypogyna]) HSP 1 Score: 267.7 bits (683), Expect = 6.096e-87 Identity = 142/261 (54.41%), Postives = 178/261 (68.20%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETES----------KRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
M++ R ALVTGAASGLG ATA+R L+QGA+V++ DLPT Q L + F+ DV + V A +D A S +G+ V++ VNCAGIAVA + L K+GPH L F +V S +RM K +G RGVIINTASIAAY+GQ+GQ AYAASK A+ GLTLP+AR+LA GIR +IAPGLFRTP+LA LP+ VQ +LG+TVP P RLG P ++A L Q+++EN MINGEVIR+DGALRMPP
Sbjct: 1 MSLARRVALVTGAASGLGRATAERLLKQGAQVVICDLPTSEG------QELARQLGPNCHFSPTDVTDEEQVTAALDLAESAFGKPVDIAVNCAGIAVAAKTLSKKGPHPLYQFQQVLNINTSGTFNVIRLAAERMSKSAPGTDGERGVIINTASIAAYEGQVGQVAYAASKGAIVGLTLPVARELAPYGIRCNTIAPGLFRTPLLAGLPDAVQDQLGKTVPFPSRLGHPEDYAQLVQSIIENKMINGEVIRIDGALRMPP 255
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|695387813|ref|XP_009519003.1| (short-chain dehydrogenase/reductase SDR [Phytophthora sojae] >gi|348683900|gb|EGZ23715.1| short-chain dehydrogenase/reductase SDR [Phytophthora sojae]) HSP 1 Score: 267.7 bits (683), Expect = 7.339e-87 Identity = 147/262 (56.11%), Postives = 175/262 (66.79%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETF-----------LKVGRETESKRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
MA+ A+VTGAASGLG ATA RF+Q GARVIL DLPT + +A E F+ DV V A +D A S++G+ VN VVNCAGIA+A + L K+G H L F V R ++RM K G RGVIINTASIAAYDGQIGQ AYAASK A+ G+TLPLARDLA GIRV +IAPGLF TP+LAALPE +Q +LG++VP P RLG+P E+A L A+++N MINGE IRLDGALRMPP
Sbjct: 1 MALSSRIAIVTGAASGLGRATATRFVQNGARVILCDLPTSDGVNVA------RELGVSCHFSPTDVTNEDDVTAALDLAESSFGEPVNTVVNCAGIALAIKTLSKKGVHQLFQFQQTINVNTVGSFNVAR-LAAERMSKTRPGAGGERGVIINTASIAAYDGQIGQAAYAASKGAIVGMTLPLARDLASYGIRVNTIAPGLFMTPLLAALPEKMQQQLGESVPFPSRLGNPEEYAQLVHAIIDNKMINGETIRLDGALRMPP 255
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|675166603|ref|XP_008892186.1| (hypothetical protein PPTG_02703 [Phytophthora parasitica INRA-310] >gi|566026699|gb|ETI49610.1| hypothetical protein F443_06601 [Phytophthora parasitica P1569] >gi|567964008|gb|ETK89499.1| hypothetical protein L915_06474 [Phytophthora parasitica] >gi|567992712|gb|ETL42902.1| hypothetical protein L916_06419 [Phytophthora parasitica] >gi|568021997|gb|ETL96078.1| hypothetical protein L917_06284 [Phytophthora parasitica] >gi|568052376|gb|ETM49254.1| hypothetical protein L914_06394 [Phytophthora parasitica] >gi|568108346|gb|ETN22970.1| hypothetical protein PPTG_02703 [Phytophthora parasitica INRA-310] >gi|570330378|gb|ETO78326.1| hypothetical protein F444_06673 [Phytophthora parasitica P1976] >gi|570954113|gb|ETP19370.1| hypothetical protein F441_06611 [Phytophthora parasitica CJ01A1] >gi|570989032|gb|ETP47314.1| hypothetical protein F442_06645 [Phytophthora parasitica P10297] >gi|970629456|gb|KUF76703.1| 3-hydroxyacyl-CoA dehydrogenase type-2 [Phytophthora nicotianae]) HSP 1 Score: 266.544 bits (680), Expect = 2.116e-86 Identity = 146/262 (55.73%), Postives = 174/262 (66.41%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETF-----------LKVGRETESKRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
M++ A+VTGAASGLG ATA RF+Q GARV+L DLPT + +A E F+ DV V A +D A S++G+ VN VVNCAGIA+A + L K+G H L F V R ++RM K G RGVIINTASIAAYDGQIGQ AYAASK A+ G+TLPLARDLA GIRV +IAPGLF TP+LAALPE VQ +LG TVP P RLG+P E+A L ++++N MINGE IRLDGALRMPP
Sbjct: 1 MSLANRIAIVTGAASGLGRATATRFVQNGARVVLCDLPTSDGVNVA------RELGVSCHFSPTDVTNEDDVTAALDLAESSFGEPVNTVVNCAGIALAIKTLSKKGVHQLFQFQQTINVNTVGSFNVAR-LAAERMSKTRPGPGGERGVIINTASIAAYDGQIGQAAYAASKGAIVGMTLPLARDLASYGIRVNTIAPGLFMTPLLAALPEKVQKQLGDTVPFPSRLGNPEEYAQLVHSIIDNKMINGETIRLDGALRMPP 255
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|1214713751|gb|OWZ24632.1| (Short-chain dehydrogenase/reductase SDR [Phytophthora megakarya]) HSP 1 Score: 266.159 bits (679), Expect = 2.779e-86 Identity = 145/262 (55.34%), Postives = 176/262 (67.18%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETF-----------LKVGRETESKRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
MA+ ALVTGAASGLG ATA RF+Q GARVIL DLPT + A +A E + F+ DV VAA +D A S++G+ VN VNCAGIA+A + L K+G H L F V R ++RM K G RG+IINTASIAAY+GQIGQ AYAASK A+ G+TLPLARDLA GIRV +IAPGLF TP+LA LPE +Q +LG++VP P RLG+P E+A L ++++N MINGE IRLDGALRMPP
Sbjct: 1 MALSSRVALVTGAASGLGRATATRFVQNGARVILCDLPTSDGAKVA------RELGTSCHFSPTDVTNEDDVAAALDLAESSFGEPVNTAVNCAGIALAIKTLSKKGVHQLFQFQQTINVNTVGSFNVAR-LAAERMSKTRPGPGGERGIIINTASIAAYEGQIGQAAYAASKGAIVGMTLPLARDLASYGIRVNTIAPGLFMTPLLAGLPEKMQQQLGESVPFPSRLGNPEEYAQLVHSIIDNKMINGETIRLDGALRMPP 255
BLAST of EWM24896.1 vs. NCBI_GenBank
Match: gi|1173928364|gb|OQR81975.1| (3-hydroxyacyl-CoA dehydrogenase [Thraustotheca clavata]) HSP 1 Score: 265.388 bits (677), Expect = 4.693e-86 Identity = 142/261 (54.41%), Postives = 178/261 (68.20%), Query Frame = 0
Query: 1 MAMRRVTALVTGAASGLGNATAQRFLQQGARVILADLPTKNSAALASLQSLEEEERSRSVFAGVDVLESSLVAAGVDSALSNWGQSVNVVVNCAGIAVAQRVLGKQGPHSLETFLKVGRETES----------KRMRKLPADENGIRGVIINTASIAAYDGQIGQTAYAASKAAVAGLTLPLARDLARDGIRVVSIAPGLFRTPMLAALPEHVQTELGQTVPLPKRLGDPMEFAMLAQAVVENPMINGEVIRLDGALRMPP 251
MA+ ALVTGAASGLG ATA+R L+QGA+V++ DLPT Q L + F+ DV V A +D A S +G+SV++ VNCAGIAVA + L K+GPH L F +V S +RM K +G RGVIINTASIAAY+GQ+GQ AYAASK A+ G+TLP+AR+L+ GIR +IAPGLFRTP+LA LP+ VQ +LG+TVP P RLG+P ++A L Q++VEN MINGEVIR+DGALRMPP
Sbjct: 1 MALASRVALVTGAASGLGRATAERLLKQGAQVVICDLPTSEG------QELARQLGPNCHFSPTDVTSEEQVTAALDLAESAFGKSVDIAVNCAGIAVAAKTLSKKGPHPLYQFQQVLNVNTSGTFNVIRLAAERMSKSAPGLDGERGVIINTASIAAYEGQVGQVAYAASKGAIVGMTLPVARELSPYGIRCNTIAPGLFRTPLLAGLPDAVQDQLGKTVPFPSRLGNPEDYAQLVQSIVENRMINGEVIRIDGALRMPP 255 The following BLAST results are available for this feature:
BLAST of EWM24896.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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