rna5765, rna5765 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5765
Unique Name	rna5765
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1762
Alignment location	CM002466.1:780786..782859 -

Link to JBrowse

Properties


Property Name	Value
Product	fatty acid desaturase
Orig transcript id	gnl\|cribi\|Naga_100092g4.2134.mrna
Orig protein id	gnl\|cribi\|Naga_100092g4.2134
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:780786..782859 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100092g4	gene5569	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5765	rna5765-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24911.1	cds5750	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:780786..782859-
coding sequence from alignment at CM002466.1:780786..782859-

mRNA sequence

>rna5765 ID=rna5765|Name=rna5765|organism=Nannochloropsis gaditana|type=mRNA|length=1762bp
ATTGCAACGTCGTCAGGCCCTCATTCCAGATATAATTTGTATTTTGAGAC
TTTGCTTGAGAGATGTAAAGTATTTATCGATGCGATCCGTATTCAAGTCG
CTCACGCAATCTTTGCACGCACTTACAGCCTTCTACACCTCTCCTCCGGC
GGCTAACTTTCGGGTATAACCTGAAGGAAAAGAGTGCGGCTGTGAGTGGA
AAGCCAAAAGCCAAGAAAGAGCTAGCCCTAGGTTCAAAATACAAACGTGT
GAGCCAGCCATGTCGGATGTCAAATCTTTGTTCCGCAAAAAAACCAAGCA
AGCGGCCAAGGCTAAAACCGAACCAGTGAAGCCAACAGCCGAGGAAGAGG
AGGATGACGAATGGGGTGTGGCACCGAAGCCTACGGAGCAATTGTACCTA
GGGAACCGCAAAGCCAGGGAGTTGATTGGTGGAGCTTACGCCGACGTCAA
CCTTGCAGTAAAAGTTGCGCACGACGACACCAAGGCCGTCTTTCATGACG
TTCGGAAGAAGGCTGTTTCGGCGGCCGCATCCGAGGCCTCCCCAGCAGCT
CCTGTCGAACCCTCTCCTCCGCCCGCCCCCGAACCAGCCCCGACCGCCCA
ACCAGGGTGCGTATATCGTGGTGTTCAGGATGTCGCCTTTTCTAAGAATC
TCCCCTTAATCGATTATCATATCCTCCTTGGCATTTATTGCTCGCTCTCA
TCCCCCCTCTTCTCGTCCCCTTCGCCCTTCTTGCCGGTCTCGTTGCTCCC
CCCCGACCGATCGGACAGGCGCTGGCGCTCCCGCCGGGTCCTGGCTGAAC
AAGGATTGATCCCTCCTCCCCTTGATAGCGGCAGCAACAGCTCCAGCAAA
GAAAACGCCACCGCTACCGAAGCCTTCCCCGCGCTATCCGGCTTTCCCTC
CCTAGGTCCTGCCCGGGCGGCTGGGCCTTCGCCCGTCGTGGCGGCCGGAA
GGTGGGGCCAGGTGGCAGACACATCCTCGTCGAGGACGACAGGCCAGAAG
ATTGAAAAGGAGGGCGGGGTCACGCCAGCACCCGCGGGCACGGCGTCGGA
GGGGGCAAAAATAGAATCGGAAGGTCCCCTCGCGGCGCCTCCCTCAGCAT
CCAACGCTGTCCTGAGTACTCCAAGCTCCCAGGGAAAGGAAAAAGAATCA
ACATTTGTCGCTCCCACAGTGACGGGGGCGACGGAGAGCTTAAATGTCCA
GGATAGCAGCGTTGGGGTCAGGCAGGAAAAAGTAGAGGGAAACGTTGCTG
TTGATGTTATAGCGGAGGGGGTGGCTACGGTCGATTTGAAAAGCAAGTTT
GGAACCAAGAAGAAGAAGAAGAAGCACATTGACATCGATGCATGAAGAGG
ATAGCAAATCGATGGTTGCCTGGAGTTACATAACAGGCGTAGGAAGTAGA
GTTTGAGGAGGCCCTCAATTTTGGTCGGTCACATTTCGGATGGATGGAGG
TGCATACATATTAAACTCTTTAAAGCAAAGATGTCTGGTCTCCAATTAAT
TCGGAGAGGTGATGGAGCATTTTTGGCATCTTACTTATTAGCGTTTGATG
TTTTCATTCAATTTTTTGATACAGGTAAAGAATCACTTAAAGTTTTCTTC
AGATCCCTGCAAACAATACATACAACCTATACAAAAGCCGTGCTACATTG
AGTTGGACTACAAGCAGTTTGAGTTTGATCAACGATCAACGAGAGTAGAG
ACAATGTGCTGATCACCATCTTTTGTGCAGCATCTTTGAAAAACATGTAC
GCCAACCTCCCC

protein sequence of rna5765

>rna5765-protein ID=rna5765-protein|Name=rna5765|organism=Nannochloropsis gaditana|type=polypeptide|length=485bp
MDSLPLTLCHDPYQRPQPYNVSLDRFSNSPFSRMGRGGEKTVTPPSKSFH
AHGHSLTASDLSRADAASTISSSVRPSKSLEAMPTEELRKKALQYGHDAS
ADRASLLQILAPYGDILLRTDAPPSLPLAPPPFTLADIKAAVPRHCFERS
LTTSFFHLACDLVLVALLGYLATLIGHPDVPTMSRYLLWPLYWYAQGSVL
TGVWVIAHECGHQSFSPYERVNNLVGWVLHSALLVPYHSWRISHGKHHNN
TGSCENDEVFAPPIKEDLMDEILLHSPLANLAQIIIMLTVGWMPGYLLMN
ATGPRKYKGKNNSHFDPNSALFSPKDRLDIIWSDIGFFLALAGVVWACTQ
YGFSTVGKYYLLPYMVVNYHLVLITYLQHTDVFIPHFRGAEWSWFRGALC
TVDRSFGWLLDHTFHHISDTHVCHHIFSKMPFYHAQEASEHIKKALGPYY
LKDDTPIWKALWRSYTLCKYVDTDKNAVFYKHRAS

mRNA from alignment at CM002466.1:780786..782859-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5765 ID=rna5765|Name=rna5765|organism=Nannochloropsis gaditana|type=mRNA|length=2074bp|location=Sequence derived from alignment at CM002466.1:780786..782859- (Nannochloropsis gaditana)
GATGGATTCATTGCCCCTGACCTTATGTCATGACCCGTATCAACGACCAC
AACCCTACAATGTATCTTTAGACAGGTTTTCCAACTCACCTTTCTCTAGA
ATGGGGCGTGGCGGTGAGAAAACTGTCACACCTCCATCAAAATCCTTCCA
TGCTCATGGCCACTCTCTGACCGCCAGTGACCTCTCTCGAGCGGATGCCG
CATCCACTATCTCGAGCTCGGTTAGGCCCAGTAAGTCGTTGGAGGCAATG
CCCACGGAAGAATTGCGAAAGAAGGCACTGCAATACGGACACGACGCCTC
CGCGGACAGGGCCTCATTGCTTCAAATACTGGTGAGAGGGAGAGCCCTGG
TGACGCCCTTGCTCACGTTAGCTTCCAAGGACCTGCAACGGCACGACATG
CTCTGTTCCTAACCAGAAATCCGCACGTTCGAGTTGTCTTTCCTGGGCTC
ACATTTCTTGTCTCACGTCGTTGAGACCGTACCCGTCTTACCCTCTCCTT
CGTCCTCCTGCATCCCCTACCACGTGCGATAGGCCCCATATGGCGACATT
CTTCTTCGTACGGACGCGCCTCCCTCCCTCCCCCTCGCCCCTCCTCCCTT
CACCCTTGCGGATATCAAAGCCGCCGTACCCAGGCATTGCTTCGAACGCT
CCTTGACCACCTCCTTCTTCCACCTCGCTTGTGACCTCGTCCTGGTTGCT
CTGCTCGGATACTTGGCCACGCTCATCGGGCACCCGGACGTGCCGACCAT
GTCCCGCTACCTACTGTGGCCTCTCTACTGGTACGCGCAGGGCTCGGTGC
TGACAGGCGTGTGGGTCATTGCCCATGAATGTGGGCATCAGTCTTTTTCC
CCGTACGAACGGGTGAACAACCTGGTGGGGTGGGTCCTGCACTCCGCCCT
CCTCGTCCCGTACCATTCCTGGCGCATCTCCCACGGCAAGCACCACAACA
ACACGGGGAGCTGCGAGAACGACGAGGTGTTCGCGCCGCCAATCAAGGAA
GACCTGATGGACGAGATCCTCCTCCACTCCCCCTTGGCCAACCTCGCCCA
AATCATCATCATGTTGACCGTGGGATGGATGCCCGGCTACCTGTTGATGA
ATGCCACGGGACCTCGAAAGTACAAGGGCAAGAACAACAGCCACTTCGAT
CCGAATTCGGCGCTGTTCTCCCCCAAGGACCGCTTGGATATCATCTGGTC
GGACATAGGCTTCTTCCTCGCTTTGGCCGGCGTGGTGTGGGCCTGCACCC
AGTACGGGTTCTCCACCGTGGGCAAGTACTACCTGCTCCCCTACATGGTG
GTGAACTATCACCTGGTGCTCATCACCTATCTCCAGCACACGGACGTCTT
CATCCCTCATTTCCGCGGGGCAGAGTGGTCATGGTTCCGGGGGGCTCTTT
GCACTGTCGACCGCTCCTTCGGCTGGCTGCTCGACCATACGTTCCACCAC
ATCTCGGACACGCACGTCTGCCATCATATCTTTAGTAAGATGCCTTTCTA
TCACGCGCAAGAAGCGAGTGAGCACATCAAGAAGGCGCTGGGGCCGTACT
ACCTGAAGGACGACACCCCGATATGGAAAGCGTTGTGGCGAAGTTATACG
CTTTGCAAGTATGTGGACACGGATAAAAATGCCGTTTTTTACAAGCACCG
AGCATCATAGTGAAGTCTTTCACCGGGGCGTGGGTCGCGAATGCGGCTTA
ATGTCCGCAGCGGCATGGGTTCACCTAAAAAGACCAAGTGTGTAGTTATG
TTTCACATCTCGAGTGGAAACGCTTGATGATGGTGATGATCAGCGAAGGA
TGGGATATATGAGAAGTATTGCCAGTATTCTTGCTGTTTTCCGTCATGTT
AGCAAACGATCACCGTTTCCTTCATATTGTGTTGGTGCATAACTGAACGA
TGTGGACACGAGAGAGGAAGAGGAGATAAGTACAACATACCTTGGATTGA
CAACGATGAAAGTTGATTGATATTTAGAAGTGGGGAGATGAGAACGAGGA
CATACCCTCAGAAATTTACAGTAAAACTAGCTCTAGGAATAAAGAAACTG
GAAAGAAGCTTCCGTCCTTGTTTT

Coding sequence (CDS) from alignment at CM002466.1:780786..782859-

>rna5765 ID=rna5765|Name=rna5765|organism=Nannochloropsis gaditana|type=CDS|length=2916bp|location=Sequence derived from alignment at CM002466.1:780786..782859- (Nannochloropsis gaditana)
GCCCCATATGGCGACATTCTTCTTCGTACGGACGCGCCTCCCTCCCTCCC
CCTCGCCCCTCCTCCCTTCACCCTTGCGGATATCAAAGCCGCCGTACCCA
GGCATTGCTTCGAACGCTCCTTGACCACCTCCTTCTTCCACCTCGCTTGT
GACCTCGTCCTGGTTGCTCTGCTCGGATACTTGGCCACGCTCATCGGGCA
CCCGGACGTGCCGACCATGTCCCGCTACCTACTGTGGCCTCTCTACTGGT
ACGCGCAGGGCTCGGTGCTGACAGGCGTGTGGGTCATTGCCCATGAATGT
GGGCATCAGTCTTTTTCCCCGTACGAACGGGTGAACAACCTGGTGGGGTG
GGTCCTGCACTCCGCCCTCCTCGTCCCGTACCATTCCTGGCGCATCTCCC
ACGGCAAGCACCACAACAACACGGGGAGCTGCGAGAACGACGAGGTGTTC
GCGCCGCCAATCAAGGAAGACCTGATGGACGAGATCCTCCTCCACTCCCC
CTTGGCCAACCTCGCCCAAATCATCATCATGTTGACCGTGGGATGGATGC
CCGGCTACCTGTTGATGAATGCCACGGGACCTCGAAAGTACAAGGGCAAG
AACAACAGCCACTTCGATCCGAATTCGGCGCTGTTCTCCCCCAAGGACCG
CTTGGATATCATCTGGTCGGACATAGGCTTCTTCCTCGCTTTGGCCGGCG
TGGTGTGGGCCTGCACCCAGTACGGGTTCTCCACCGTGGGCAAGTACTAC
CTGCTCCCCTACATGGTGGTGAACTATCACCTGGTGCTCATCACCTATCT
CCAGCACACGGACGTCTTCATCCCTCATTTCCGCGGGGCAGAGTGGTCAT
GGTTCCGGGGGGCTCTTTGCACTGTCGACCGCTCCTTCGGCTGGCTGCTC
GACCATACGTTCCACCACATCTCGGACACGCACGTCTGCCATCATATCTT
TAGTAAGATGCCTTTCTATCACGCGCAAGAAGCGAGTGAGCACATCAAGA
AGGCGCTGGGGCCGTACTACCTGAAGGACGACACCCCGATATGGAAAGCG
TTGTGGCGAAGTTATACGCTTTGCAAGTATGTGGACACGGATAAAAATGC
CGTTTTTTACAAGCACCGAGCATCATAGATGGATTCATTGCCCCTGACCT
TATGTCATGACCCGTATCAACGACCACAACCCTACAATGTATCTTTAGAC
AGGTTTTCCAACTCACCTTTCTCTAGAATGGGGCGTGGCGGTGAGAAAAC
TGTCACACCTCCATCAAAATCCTTCCATGCTCATGGCCACTCTCTGACCG
CCAGTGACCTCTCTCGAGCGGATGCCGCATCCACTATCTCGAGCTCGGTT
AGGCCCAGTAAGTCGTTGGAGGCAATGCCCACGGAAGAATTGCGAAAGAA
GGCACTGCAATACGGACACGACGCCTCCGCGGACAGGGCCTCATTGCTTC
AAATACTGGCCCCATATGGCGACATTCTTCTTCGTACGGACGCGCCTCCC
TCCCTCCCCCTCGCCCCTCCTCCCTTCACCCTTGCGGATATCAAAGCCGC
CGTACCCAGGCATTGCTTCGAACGCTCCTTGACCACCTCCTTCTTCCACC
TCGCTTGTGACCTCGTCCTGGTTGCTCTGCTCGGATACTTGGCCACGCTC
ATCGGGCACCCGGACGTGCCGACCATGTCCCGCTACCTACTGTGGCCTCT
CTACTGGTACGCGCAGGGCTCGGTGCTGACAGGCGTGTGGGTCATTGCCC
ATGAATGTGGGCATCAGTCTTTTTCCCCGTACGAACGGGTGAACAACCTG
GTGGGGTGGGTCCTGCACTCCGCCCTCCTCGTCCCGTACCATTCCTGGCG
CATCTCCCACGGCAAGCACCACAACAACACGGGGAGCTGCGAGAACGACG
AGGTGTTCGCGCCGCCAATCAAGGAAGACCTGATGGACGAGATCCTCCTC
CACTCCCCCTTGGCCAACCTCGCCCAAATCATCATCATGTTGACCGTGGG
ATGGATGCCCGGCTACCTGTTGATGAATGCCACGGGACCTCGAAAGTACA
AGGGCAAGAACAACAGCCACTTCGATCCGAATTCGGCGCTGTTCTCCCCC
AAGGACCGCTTGGATATCATCTGGTCGGACATAGGCTTCTTCCTCGCTTT
GGCCGGCGTGGTGTGGGCCTGCACCCAGTACGGGTTCTCCACCGTGGGCA
AGTACTACCTGCTCCCCTACATGGTGGTGAACTATCACCTGGTGCTCATC
ACCTATCTCCAGCACACGGACGTCTTCATCCCTCATTTCCGCGGGGCAGA
GTGGTCATGGTTCCGGGGGGCTCTTTGCACTGTCGACCGCTCCTTCGGCT
GGCTGCTCGACCATACGTTCCACCACATCTCGGACACGCACGTCTGCCAT
CATATCTTTAGTAAGATGCCTTTCTATCACGCGCAAGAAGCGAGTGAGCA
CATCAAGAAGGCGCTGGGGCCGTACTACCTGAAGGACGACACCCCGATAT
GGAAAGCGTTGTGGCGAAGTTATACGCTTTGCAAGTATGTGGACACGGAT
AAAAATGCCGTTTTTTACAAGCACCGAGCATCATAGATGGATTCATTGCC
CCTGACCTTATGTCATGACCCGTATCAACGACCACAACCCTACAATGTAT
CTTTAGACAGGTTTTCCAACTCACCTTTCTCTAGAATGGGGCGTGGCGGT
GAGAAAACTGTCACACCTCCATCAAAATCCTTCCATGCTCATGGCCACTC
TCTGACCGCCAGTGACCTCTCTCGAGCGGATGCCGCATCCACTATCTCGA
GCTCGGTTAGGCCCAGTAAGTCGTTGGAGGCAATGCCCACGGAAGAATTG
CGAAAGAAGGCACTGCAATACGGACACGACGCCTCCGCGGACAGGGCCTC
ATTGCTTCAAATACTG

Synonyms

Publications