rna5745, rna5745 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5745
Unique Name	rna5745
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2766
Alignment location	CM002466.1:743796..746676 +

Link to JBrowse

Properties


Property Name	Value
Product	conserved unknown protein
Orig transcript id	gnl\|cribi\|Naga_100086g17.3838.mrna
Orig protein id	gnl\|cribi\|Naga_100086g17.3838
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:743796..746676 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100086g17	gene5550	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5745	rna5745-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24938.1	cds5730	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:743796..746676+
coding sequence from alignment at CM002466.1:743796..746676+

mRNA sequence

>rna5745 ID=rna5745|Name=rna5745|organism=Nannochloropsis gaditana|type=mRNA|length=2766bp
ATGAGTGAATTCCTTTTCATACGCACCACTAAAATATGCTCCCAACACTG
CTTCCGTACACTTGTTCCAAAGCGGACAGTACATTCACAGGATATTGGCA
ACATCATCACCATGGCGAATTTGGATTCAACCCTGCTGGACGCTATTCGA
TCAAAAATGAGCAGCGTAAGAGTGCCCGGCAGCTATGACAAAGTCTACAA
CGATGAATGTATGTACTCTTTCGACACACCCTTCTCTCCGGACGGCATAT
ACGTGAATCTTGCGACGTGGGGCGGTGTAGGCAGGGATTATCTTGCTTTT
GATAGCCATAAAACGGGCAGCACGCTCTACGTCCATCTGAAATACACCAA
GGTTCCTGTGCCAGAGGATGACCAGGTTCAGAAAAAGGAAAGCGAAAGTT
CACTCGCACCAAGGGAGGATGCGGCGCAGTCCAGCCCAGTCTGCGAAGAG
AAAAATACGGGTCCTACGGTCTTGGGCATCGGCGTGGAAGGAGGCTTCCC
GCTAGACAGCCAGAAGGTTGAGGTGGTGAAAGAGTGCGCTTTGGTTGTCG
TGAATCCCGGGGAGAATGGGAGCTGCGGCAAGGTCGAGACCCAATCAGTG
CCATTGCCCAACACGGCCCTCCCGGAAATTGTCTCCCGTGCGGCTCGAGC
ACTTATTGACCATCAAGGGGCTGGGAGTCAGGCAGAAGAGGCCACCTGGC
TCGCCGAGGAAGACCCGCGGCCGGTGAGCAAGTACGCAGACGGTTTGATT
CAATTGGACAACGGAGTAAAAGTCTCCAGTGACCCCGCCACATGGCGCTG
TGCGGAGTCCGGGCAGACGCAAAACCTGTGGTTAAACCTGTCAGACGGGT
ACATCGGGTCGGGACGGGCCCAGGTCGTCAACGGCGAGACGATCGGGACA
GGTGCGGCCTTGAGGCACTTCCACGACACCCACGGCCTGTACCCTCTGGC
GGTGAAGCTGGGGACCATCACTCCGCACGGCGCGGACGTGTACAGCTACG
CGCCGGACGAGGACGGGATGGTGACGGACCCCAAACTGGCGCAACACTTG
GCCCATTGGGGCATCGACGCGATGCGGTTGGAAAAAACGGACAAGTCGCT
GGCAGAGCTGGAGATCGAGGGGCAAAAATGGGCTTTTTCGCGTATAACAG
AGGCAGGGGCCCATTTGCGGCCCCTCCGAGGTCCGGGGTACGTGGGGTTG
AAAAACTTAGGCAATTCCTGCTACATGAACAGCGTCCTGCAACTCCTTTT
CACCCTCCCAGAAGTCCAACGACAATACCTCGACCACGCGTACGACCTGG
CCGAGCGGGAGGCAGCCGATGCAGCGGGCGACGCGGGCTTCACCACAAGC
TTGGAGCCCAAAATGTTCAAGACCCTTATGGGCAAGCAGCACCCCGAGTT
CTCGACGGGGAGGCAGCAGGACGCGGCCGAATACCTCGAGCACGTGCTGG
AGAGATTGCTGAGGGCGGAACGGGGCCTGGGTGGGAAGGAGGGAGGCCAG
GACTGGAGTGTCTCGACGGAAGATCTCTTCAAATACCTGGTGGAGGAGCG
ATTGCAGTGCGTGGAGAGTGGGAAGGTCCGGTACGGGAGCAAGAGCGATC
TCTTCCTCCGCTTGATGATACCCGTGGAGGCGGCCACGAACAGAGACGCG
GTCCTCCAGCACCAGGCGAAGCACGGCGTTAACAAGAAACAGAAATTGGC
CGCGGATAAGTCGCCACCAGCAGGGCCTGCCGTCGAAGAGGGAAGCGCAG
GGCAGGAGGAGGGGGCCAGTGGCTTGGGCGGCGAGGAGGGCAATGCTGCG
GAGAAGGAGGAAGAGGTGTTCCCTATCGTGCCGTTCGCCGCCTGTTTTGA
GACATTTGTCCGGACTGAGGACGTGGAGGATTATTTTTCTACCGCCTTGG
GCCGGAAGGGTCTAGCGCGCAAAAGCGTGCGTTTCCAGACCTTCCCTCGC
TACCTGATCGTCCAGCTCAAGCGTTACTACGTGGACACTCAGACCTGGGA
AGGAAAAAAGCTGGAGGCAGTGGTGGATGTGCCGGAGGTGTTGGACCTCC
GGGCGTGGCGGGGCCGGGGTCTGCAGGAGGGCGAGGAGACCTTGCCGGAT
GGGAAGGAGGGCGGGGAGAAAGGGGAAGCGGAGGGGAAGACGCCCTCGGT
AGATGCAGGGATGGCGGCCCAGATGGAATGCATGGGCTTCTCCACCCACG
CGATCGCCAGGGCCTTGCTGGCTGTGGGCAACGCGGGGGTGGAGCAGGCG
ACGGCCTGGTTGTTCGAGCATTTGGAGGACTCGGATATCAACGAACCCCT
TCCGTCGGCCTCAGCCACCGCCTCGTCGGCGCCTAGAGCGGCGGAGCCCG
ACGCAAGTGCTGTAAACAATTTAGCAGCCATGATGGGTTTCACTGAAGAG
CAAGCGAAAGCGGCTTTGCAGGCCACGGAGGGGAGCATGGAACGTGCGGC
GGATTGGCTCTTCTCCCACGCGGACGACCTCCCGCGGGCCGTGGCCGAGG
TGCTTGGGGCCGGCGGAGGGGAGGAGAGAGGGCAGGAGGGAGGACAAACG
CCAAGCCAGTGCAACGACGGGGAAGGTGTGTATTCGCTGGTGGGTTTCAT
CAGCCACGTAGGGCGGAATTTGGGGAGCGGGCACTACGTAGCGCACATCA
AGAAGGAGGGCGAGTGGGCGATCTTCGATGACCAGAAGGTGGCGGCAAGC
GAGAAGCCGCCCAAGGACCTGGGTTACCTGTACGTATACCGGCGACAGGA
TGCGATGGAGGAGTAG

protein sequence of rna5745

>rna5745-protein ID=rna5745-protein|Name=rna5745|organism=Nannochloropsis gaditana|type=polypeptide|length=360bp
MGTLTTKESPKAIENGAHSMSSSPFPTSPPPSSSESDSDEGKPSNPEASH
WSVVAGTSGDGTAHPTSRLPSGLASSIPSSLHPPPSRTPSSALPPTAQAP
PGPHPVMTEENLLDLLSGKTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQ
ALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKV
AVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSF
PPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRS
SEAGEQEDAQEFLAFLLDRLHEEAVGAGAGGGKGKGRRRRRRGKGVGRKS
GRKAASPSSL

mRNA from alignment at CM002466.1:743796..746676+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5745 ID=rna5745|Name=rna5745|organism=Nannochloropsis gaditana|type=mRNA|length=2881bp|location=Sequence derived from alignment at CM002466.1:743796..746676+ (Nannochloropsis gaditana)
AACTGTCTTTCACAgcgacaagaagaaaggaaataGCGGGCAAATCCGCC
ACATACACGCTGTCGTCTGATGGATAATCATCCTTTTGCATGCATGTGGG
CGGTGAAATGGGTCGCATGGCAGGTTGGGACACTCGAGTTTCGAAAAAAT
CATGCAGATATCAACGAGAAAGCTACGATTGAGCAACATCTGCAACAACT
CAGACTAACTGCAGCCCCGTAACTCCAACGCATTATGGCATGCATCAACG
CACAGATCCGCCCCTGTCAAAGATTGTGAAACGTATCGTTTGTTGGCGGC
AGCGGGGGGTCAAGGGAGGGTTGTGAGAAAAGGGGATGAACGGTGGTGGG
GGCAAatacgtggaaggggaagaggcgatgGTGGAAGCCTCCTTGAGGAC
CATGTCACTGAAGAATGCCGCAGTACCTGCAACGGATCAGATGCATGTCC
TACTGGGAGACAActtggagaaaaaaaggaagaaaaaaaagcggaaaaaa
aaagcaagacAGCTGCCGCGACGGGACCCCAGGAGAACGCCACGATCGAG
AACCACAGCCCAACAGGTACACGAAGAAGCAATGATGCCATTGCGGCAAC
CGTCTCGGTAAAGATGGGCACATTGACGACGAAAGAGTCTCCTAAAGCGA
TAGAAAACGGTGCCCATTCCATGTCAAGCTCGCCCTTTCCaacgtccccg
ccgccctcctcaagCGAATCAGACTCTGACGAAGGGAAGCCATCAAACCC
AGAGGCGTCGCACTGGTCCGTGGTCGCAGGCACGTCAGGAGACGGCACGG
CTCATCCGACGTCCCGTCTGCCATCGGGCCTtgcgtcctccatccctagC
TCCCTGCATCCACCACCCTCCAGGACACCgtcgtccgccctcccccccac
agCACAAGCTCCGCCCGGCCCCCACCCAGTTATGACCGAGGAAAACCTCC
TTGACTTACTGTCGGGTAAAACGCTGCCCCCTGccatctcgtcctccatc
cccagaCCGCACCGGGGTCTGGTCAACGCCGGGAACACCTGCTTCCAGAA
TCTGGTCCTACAGGCCCTTCTCGCCAGCGaacccctccatcgcctcctcc
tcgtcctccgacCACTCGTCCTCGCGTCTTCTTCGCcggcctcccgctcc
ctttccctcctggcccGGCGCTGCCAAGCACTCGTGCCGACGTGGATGGA
TATGGCGAAGGTCGCCGTCGCCCTTGAGGATCCCTCTCTTGTCGCGGCCT
CCACTGCCTCTCCCGCGCTCGTCATGTACAAAAAGAAAGACAGCGCCGTC
GCTGGGAGGAAGTCCGGCAAGAAGCACCTCGTCGGcaccggctcctcctc
ctcctcctcatttcccccacttccttctcaccccAGCGGCGTGGCCAACG
GGTTCAAGCTCCGTGGCCCGCTAGAGGCACGGTCGCCTTCACCCCGTGAT
TTCTACCTGGCACCCTTGCGGCCGGACGACTatttggaggaggctttccg
GGCCTTCCGATCGTCAGAGGCCGGGGAACAGGAAGATGCTCAGGAGTTCT
TGGCCTTCCTCTTGGACCGGCTGCACGAAGAAgccgtgggggcgggggcg
gggggggggaagggaaaggggcgaaggaggaggaggagggggaagggggt
tgGCAGGAAGTcggggagaaaggccgcGTCGCCAAGCTCTCTGTGAGCGG
GGTCAAGCGGACCGAGAAGGGGACCACGGACGTATCGGCGATTTCCCGCC
TCTTCTATGGGCGGGAGCGCTCGGACataaggagggcgacgagtCGGAGC
ATTTCGGCGACGATGACAAGGTTCAATTGTCTTCAGCTGGACTTGCCGCC
cctgggtggcggggggaagaaggaagtggcATTAGAGGAGGTAATCGAGC
ATTCCttccgggaggaggtgatcgaAAGCAGCGACGGAACATTCCTTCGG
AAAAAGCTCTGCCTGGAtgcgctccctcccgtcctcatTCTCCACCTCAA
GCGCTTCATTTTTGATCTCCATCAAGGGGTGGGCGTCAAGCTGCACCACA
GAGTCCACTATCCGTCCTGCCTCAGGCTGCCTTCTCAGATGCTCTCAGTA
AGTCTGCGGACGACGGCCGGgatcgagggggggaaaggcgagggaaaggg
ccctGCATACGAGCTGTTTGCGGTGGGGCTGCACTATGGTCGTTCCTTGA
ACGGTGGCCACTACACGGTGTTttgcaaggagggggggggtggaaaggaa
TGGGTGGGATACGACGACGAGCGCGTCGATCGGGTTCAAGAATGGGAGGT
AAAGAGTTATACAGAGCAAGTCTACCTCCTTTTCTATGAACGGGTGTAGG
ttggggagagagaggggtcggtgggaagggaaagacggggctGTACAGCG
GTCAGGCACGGATGGTGGAAAATCGTTCAAATGAAGTAAGCTACCGGCGA
CTACCCCTTGCTTGGCTCGTTTTTAGGAAAATTCTAGTCGTTCGCGTTCT
GCCTCCTGCGTACATTTTGCCCATCTTTTAAAATTTTAAAGGGGGTCATG
CAGACGGTGGAAGCTTAGCCACGCAGGCTTTCCGCTCCGTGTAACCAATG
GTCAGGACTAGGCAATGCATGGGCAGAGATTGTGCCACGGCTCAAGCTCG
TGCTGGCGAGTTGATCGGGGCAGCATCCAAAATAGAGCTTGATTCCGGCG
ACAGTGGTGGGAATCGAGATTGTGTCAGGAATAAGGATAGCATTCGGACT
GTGCGACAGCTACGACTAGAGCGGGATGGTAGACTACACGCAAGGGCAGA
GGCCTCGTGGGACAGGCGGACCCTGGCAATTGAAGCTACGTACCCCTGTG
GAAATTAAGCGTAAAAACCGTCTTACAAAGT

Coding sequence (CDS) from alignment at CM002466.1:743796..746676+

>rna5745 ID=rna5745|Name=rna5745|organism=Nannochloropsis gaditana|type=CDS|length=1083bp|location=Sequence derived from alignment at CM002466.1:743796..746676+ (Nannochloropsis gaditana)
ATGGGCACATTGACGACGAAAGAGTCTCCTAAAGCGATAGAAAACGGTGC
CCATTCCATGTCAAGCTCGCCCTTTCCaacgtccccgccgccctcctcaa
gCGAATCAGACTCTGACGAAGGGAAGCCATCAAACCCAGAGGCGTCGCAC
TGGTCCGTGGTCGCAGGCACGTCAGGAGACGGCACGGCTCATCCGACGTC
CCGTCTGCCATCGGGCCTtgcgtcctccatccctagCTCCCTGCATCCAC
CACCCTCCAGGACACCgtcgtccgccctcccccccacagCACAAGCTCCG
CCCGGCCCCCACCCAGTTATGACCGAGGAAAACCTCCTTGACTTACTGTC
GGGTAAAACGCTGCCCCCTGccatctcgtcctccatccccagaCCGCACC
GGGGTCTGGTCAACGCCGGGAACACCTGCTTCCAGAATCTGGTCCTACAG
GCCCTTCTCGCCAGCGaacccctccatcgcctcctcctcgtcctccgacC
ACTCGTCCTCGCGTCTTCTTCGCcggcctcccgctccctttccctcctgg
cccGGCGCTGCCAAGCACTCGTGCCGACGTGGATGGATATGGCGAAGGTC
GCCGTCGCCCTTGAGGATCCCTCTCTTGTCGCGGCCTCCACTGCCTCTCC
CGCGCTCGTCATGTACAAAAAGAAAGACAGCGCCGTCGCTGGGAGGAAGT
CCGGCAAGAAGCACCTCGTCGGcaccggctcctcctcctcctcctcattt
cccccacttccttctcaccccAGCGGCGTGGCCAACGGGTTCAAGCTCCG
TGGCCCGCTAGAGGCACGGTCGCCTTCACCCCGTGATTTCTACCTGGCAC
CCTTGCGGCCGGACGACTatttggaggaggctttccgGGCCTTCCGATCG
TCAGAGGCCGGGGAACAGGAAGATGCTCAGGAGTTCTTGGCCTTCCTCTT
GGACCGGCTGCACGAAGAAgccgtgggggcgggggcggggggggggaagg
gaaaggggcgaaggaggaggaggagggggaagggggttgGCAGGAAGTcg
gggagaaaggccgcGTCGCCAAGCTCTCTGTGA

Synonyms

Publications