EWM24938.1, cds5730 (CDS) Nannochloropsis gaditana

Overview
NameEWM24938.1
Unique Namecds5730
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:744409..745491 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24938.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100086g17.3838.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:744409..745491 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0009056catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR028889USP_dom
IPR001394Peptidase_C19_UCH
Homology
BLAST of EWM24938.1 vs. NCBI_GenBank
Match: gi|585106568|gb|EWM24938.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query:    1 MGTLTTKESPKAIENGAHSMSSSPFPTSPPPSSSESDSDEGKPSNPEASHWSVVAGTSGDGTAHPTSRLPSGLASSIPSSLHPPPSRTPSSALPPTAQAPPGPHPVMTEENLLDLLSGKTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGAGAGGGKGKGRRRRRRGKGVGRKSGRKAASPSSL 360
            MGTLTTKESPKAIENGAHSMSSSPFPTSPPPSSSESDSDEGKPSNPEASHWSVVAGTSGDGTAHPTSRLPSGLASSIPSSLHPPPSRTPSSALPPTAQAPPGPHPVMTEENLLDLLSGKTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGAGAGGGKGKGRRRRRRGKGVGRKSGRKAASPSSL
Sbjct:    1 MGTLTTKESPKAIENGAHSMSSSPFPTSPPPSSSESDSDEGKPSNPEASHWSVVAGTSGDGTAHPTSRLPSGLASSIPSSLHPPPSRTPSSALPPTAQAPPGPHPVMTEENLLDLLSGKTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGAGAGGGKGKGRRRRRRGKGVGRKSGRKAASPSSL 360          
BLAST of EWM24938.1 vs. NCBI_GenBank
Match: gi|298706128|emb|CBJ29221.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.1301 bits (235), Expect = 9.866e-18
Identity = 72/201 (35.82%), Postives = 89/201 (44.28%), Query Frame = 0
Query:  133 HRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLA------PLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 327
            HRGL+N GN+CF+N VLQALLA EP  ++L    P  L  S PA  +L           PTW  +A+ A A E P   AA+                                      PL S  S  A G         R      ++ A      P+ PD+ +  AF AFR++  GEQEDAQEFLAF LD+LHEE V A
Sbjct:  283 HRGLINTGNSCFRNAVLQALLACEPFVQVLFRAAP-GLRDSVPAREAL-----------PTWAQLARFAAAFEPPKPGAAA--------------------------------------PLASGGSSSAKGAWSTAGGRNRGGGGGRYHRASSAAAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDA 433          
BLAST of EWM24938.1 vs. NCBI_GenBank
Match: gi|366987127|ref|XP_003673330.1| (hypothetical protein NCAS_0A03840 [Naumovozyma castellii CBS 4309] >gi|342299193|emb|CCC66942.1| hypothetical protein NCAS_0A03840 [Naumovozyma castellii CBS 4309])

HSP 1 Score: 63.929 bits (154), Expect = 1.861e-7
Identity = 64/214 (29.91%), Postives = 94/214 (43.93%), Query Frame = 0
Query:  119 KTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAA---STASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLE--EAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 327
            +T+P  I S IPR   G+VN  N CF + VLQ LL  +P   +L V+    + S    S S     R   A V  +    K  V  +   +  +   ST++P          + A        +    S+S+++ PP  S         +L G   A S +     L  ++PDD+ +       FR  + G QEDA+EFL  LLD+LHEE V +
Sbjct:  420 RTIP--IKSIIPR---GIVNMANICFMSSVLQVLLYCKPFIDILNVISTRNMYSRVGVSSS-----RLLDACVNLYKQFDKETVEAQQKEMEESKSLSTSNPTSA------PSSASSSVSSSSMGSLVSASNATPPPQQSKEKTK----QLDGQTSATSETGITTSLPAIKPDDFYKILSTIPKFRDLQWGRQEDAEEFLTHLLDQLHEELVSS 613          
The following BLAST results are available for this feature:
BLAST of EWM24938.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106568|gb|EWM24938.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|298706128|emb|CBJ29221.1|9.866e-1835.82conserved unknown protein [Ectocarpus siliculosus][more]
gi|366987127|ref|XP_003673330.1|1.861e-729.91hypothetical protein NCAS_0A03840 [Naumovozyma cas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5745rna5745Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications