EWM24938.1, cds5730 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24938.1 vs. NCBI_GenBank
Match: gi|585106568|gb|EWM24938.1| (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query: 1 MGTLTTKESPKAIENGAHSMSSSPFPTSPPPSSSESDSDEGKPSNPEASHWSVVAGTSGDGTAHPTSRLPSGLASSIPSSLHPPPSRTPSSALPPTAQAPPGPHPVMTEENLLDLLSGKTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGAGAGGGKGKGRRRRRRGKGVGRKSGRKAASPSSL 360
MGTLTTKESPKAIENGAHSMSSSPFPTSPPPSSSESDSDEGKPSNPEASHWSVVAGTSGDGTAHPTSRLPSGLASSIPSSLHPPPSRTPSSALPPTAQAPPGPHPVMTEENLLDLLSGKTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGAGAGGGKGKGRRRRRRGKGVGRKSGRKAASPSSL
Sbjct: 1 MGTLTTKESPKAIENGAHSMSSSPFPTSPPPSSSESDSDEGKPSNPEASHWSVVAGTSGDGTAHPTSRLPSGLASSIPSSLHPPPSRTPSSALPPTAQAPPGPHPVMTEENLLDLLSGKTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGAGAGGGKGKGRRRRRRGKGVGRKSGRKAASPSSL 360
BLAST of EWM24938.1 vs. NCBI_GenBank
Match: gi|298706128|emb|CBJ29221.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.1301 bits (235), Expect = 9.866e-18 Identity = 72/201 (35.82%), Postives = 89/201 (44.28%), Query Frame = 0
Query: 133 HRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLA------PLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 327
HRGL+N GN+CF+N VLQALLA EP ++L P L S PA +L PTW +A+ A A E P AA+ PL S S A G R ++ A P+ PD+ + AF AFR++ GEQEDAQEFLAF LD+LHEE V A
Sbjct: 283 HRGLINTGNSCFRNAVLQALLACEPFVQVLFRAAP-GLRDSVPAREAL-----------PTWAQLARFAAAFEPPKPGAAA--------------------------------------PLASGGSSSAKGAWSTAGGRNRGGGGGRYHRASSAAAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDA 433
BLAST of EWM24938.1 vs. NCBI_GenBank
Match: gi|366987127|ref|XP_003673330.1| (hypothetical protein NCAS_0A03840 [Naumovozyma castellii CBS 4309] >gi|342299193|emb|CCC66942.1| hypothetical protein NCAS_0A03840 [Naumovozyma castellii CBS 4309]) HSP 1 Score: 63.929 bits (154), Expect = 1.861e-7 Identity = 64/214 (29.91%), Postives = 94/214 (43.93%), Query Frame = 0
Query: 119 KTLPPAISSSIPRPHRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAA---STASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLE--EAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 327
+T+P I S IPR G+VN N CF + VLQ LL +P +L V+ + S S S R A V + K V + + + ST++P + A + S+S+++ PP S +L G A S + L ++PDD+ + FR + G QEDA+EFL LLD+LHEE V +
Sbjct: 420 RTIP--IKSIIPR---GIVNMANICFMSSVLQVLLYCKPFIDILNVISTRNMYSRVGVSSS-----RLLDACVNLYKQFDKETVEAQQKEMEESKSLSTSNPTSA------PSSASSSVSSSSMGSLVSASNATPPPQQSKEKTK----QLDGQTSATSETGITTSLPAIKPDDFYKILSTIPKFRDLQWGRQEDAEEFLTHLLDQLHEELVSS 613 The following BLAST results are available for this feature:
BLAST of EWM24938.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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