EWM24965.1, cds5719 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|585106596|gb|EWM24965.1| (ribonuclease h [Nannochloropsis gaditana]) HSP 1 Score: 1224.92 bits (3168), Expect = 0.000e+0 Identity = 596/596 (100.00%), Postives = 596/596 (100.00%), Query Frame = 0 Query: 1 MTDGAIGPAASPPCCSRISAQASKSQPGRAFLCRIITLLTLWKLGKGKMASSVRSNGVAALNATPLANVHVQWRRRATAGRGHFRNTFGAFISTNLRTQSTIPMGTAAKKSSKLSGGTTPPPHRPRSSSGGTLTGDTGHVNPYQPHSPFLDQPPAYSHLVFPGGDSKAASKAHQHTNSYLSHVLRLRLRTMDPSSLPPTSSLASPLLAAEGEIVIEQGPGSNARKPQPAWCTQVWVGLGRGEREAVYGLIAQGVAAAQALGLKNLQVAAPSAQVAREICGIDAVAESKGSKGSQGGDCSLLTAHRKIQSMLKFFPFFSVSYRIVKEGHEEDMVLQPVPSLRGSQDGDEEEAHPMPPTTLTPFRTPSTTGFGNGAEDSAVNSEEEDDEEGHARSRHDASPDSPVHRASCPPSAPLPARSHVSKVGTGMRSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFDSGGLRLDYSKEADQVKE 596 MTDGAIGPAASPPCCSRISAQASKSQPGRAFLCRIITLLTLWKLGKGKMASSVRSNGVAALNATPLANVHVQWRRRATAGRGHFRNTFGAFISTNLRTQSTIPMGTAAKKSSKLSGGTTPPPHRPRSSSGGTLTGDTGHVNPYQPHSPFLDQPPAYSHLVFPGGDSKAASKAHQHTNSYLSHVLRLRLRTMDPSSLPPTSSLASPLLAAEGEIVIEQGPGSNARKPQPAWCTQVWVGLGRGEREAVYGLIAQGVAAAQALGLKNLQVAAPSAQVAREICGIDAVAESKGSKGSQGGDCSLLTAHRKIQSMLKFFPFFSVSYRIVKEGHEEDMVLQPVPSLRGSQDGDEEEAHPMPPTTLTPFRTPSTTGFGNGAEDSAVNSEEEDDEEGHARSRHDASPDSPVHRASCPPSAPLPARSHVSKVGTGMRSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFDSGGLRLDYSKEADQVKE Sbjct: 1 MTDGAIGPAASPPCCSRISAQASKSQPGRAFLCRIITLLTLWKLGKGKMASSVRSNGVAALNATPLANVHVQWRRRATAGRGHFRNTFGAFISTNLRTQSTIPMGTAAKKSSKLSGGTTPPPHRPRSSSGGTLTGDTGHVNPYQPHSPFLDQPPAYSHLVFPGGDSKAASKAHQHTNSYLSHVLRLRLRTMDPSSLPPTSSLASPLLAAEGEIVIEQGPGSNARKPQPAWCTQVWVGLGRGEREAVYGLIAQGVAAAQALGLKNLQVAAPSAQVAREICGIDAVAESKGSKGSQGGDCSLLTAHRKIQSMLKFFPFFSVSYRIVKEGHEEDMVLQPVPSLRGSQDGDEEEAHPMPPTTLTPFRTPSTTGFGNGAEDSAVNSEEEDDEEGHARSRHDASPDSPVHRASCPPSAPLPARSHVSKVGTGMRSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFDSGGLRLDYSKEADQVKE 596
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1210526307|dbj|GAX15225.1| (hypothetical protein FisN_12Lh072 [Fistulifera solaris]) HSP 1 Score: 132.494 bits (332), Expect = 6.143e-30 Identity = 65/150 (43.33%), Postives = 98/150 (65.33%), Query Frame = 0 Query: 433 IINPTAQYLLRFDGGSRGNP-GPGGAGIVIYEQASLVQVRGLSLWLGSD--PPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFD 579 II+P YLL+FDGG+RGNP G G G+V+++ +G +W G PP++NN AEYH ++ GL AK+LGI+RI +GDS+LVV+Q+ GVY+VR+ +L+ L+ + + F + S+ H+ R N AD LAN A+D + + F+ Sbjct: 266 IIDPQRTYLLQFDGGARGNPAGKSGCGMVLFDD------QGHEVWCGWKFLPPMSNNMAEYHSILLGLLCAKSLGIQRIQAQGDSELVVKQLNGVYQVRDPKLKELWGPTRDVMQEFQDISVTHIAREYNKRADWLANHAMDTETSFGFE 409 HSP 2 Score: 65.855 bits (159), Expect = 7.734e-8 Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 0 Query: 431 SPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMAL-KENFAEFSIRHVERSQNSDADALANRAL 570 S ++NP Y+L+ G S+ N G GIV+ + +S + R + SD L+ AEY L+ GL A LG++ + +E D ++ +Q+ G++ + ++ LY + M L +E F +R V + +A LA RAL Sbjct: 52 SLLLNPQHTYILQTKGYSKLNADGTGIGIVLKDSSSTLTARH---YFPSDRALS--LAEYSALIVGLHYAIQLGVQHLMLETDHAVLAKQLQGIFPMEKRIMKPLYWQVMHLVEERLQTFRVRIVPNVE--EATELAKRAL 185
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1026759433|gb|OAE21357.1| (hypothetical protein AXG93_891s1050 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 127.872 bits (320), Expect = 2.261e-29 Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 0 Query: 431 SPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRAL 570 SP+I+ A Y L +DG S+GNPG GAG +I V V L++ LG TNN AEY GL+AGL+ A LGI+RI +GDS+LV +Q+ GV+ V+NE L VL EA L +F F IRHV+R NS ADALAN+A+ Sbjct: 152 SPVIDHDAVYQLEYDGASKGNPGHAGAGALIRHPDGTV-VCELTVGLGK---ATNNVAEYRGLIAGLKKALDLGIQRIQAQGDSKLVTQQVRGVWAVKNENLAVLCKEARRLVTSFKGFEIRHVDREWNSAADALANKAV 287
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1084712881|gb|OGP58163.1| (hypothetical protein A2V67_05800 [Deltaproteobacteria bacterium RBG_13_61_14]) HSP 1 Score: 123.635 bits (309), Expect = 5.548e-29 Identity = 62/135 (45.93%), Postives = 86/135 (63.70%), Query Frame = 0 Query: 442 LRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNG 576 + DG +RGNPGP GAG+VI+ + + +LG TNN+AEY LV LR A+ LG R++ V DS+L+V+Q+LG Y+V+N L+VL+ +A LK F F+I H+ R N +AD LANRA+DE G Sbjct: 60 VNIDGAARGNPGPAGAGVVIWRGNKVFE--EFCEYLGK---ATNNQAEYRALVLALRRARELGARKVAVRSDSELLVKQLLGEYRVKNPELKVLFQQAQDLKRGFKNFTIEHIPREDNREADRLANRAIDEFAEG 189
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1210520992|dbj|GAX20225.1| (hypothetical protein FisN_12Hh072 [Fistulifera solaris]) HSP 1 Score: 129.798 bits (325), Expect = 6.256e-29 Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = 0 Query: 433 IINPTAQYLLRFDGGSRGNP-GPGGAGIVIYEQASLVQVRGLSLWLGSD---PPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFD 579 II+P YLL+FDGG+RGNP G G G+V+++ +G +W G PP++NN AEYH ++ GL AK+LGI+RI +GDS+LVV+Q+ GVY+VR+ +L+ L+ + + F S+ H+ R N AD LAN A+D + + F+ Sbjct: 288 IIDPQRTYLLQFDGGARGNPAGKSGCGMVLFDD------QGHEVWCGWKYLKPPMSNNMAEYHSILLGLLCAKSLGIQRIQAQGDSELVVKQLNGVYQVRDPKLKELWGPTRDVMKEFQTISVTHIAREYNKRADWLANHAMDTETSFGFE 432
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|308807192|ref|XP_003080907.1| (putative RNase (ISS) [Ostreococcus tauri]) HSP 1 Score: 127.872 bits (320), Expect = 6.734e-29 Identity = 71/154 (46.10%), Postives = 98/154 (63.64%), Query Frame = 0 Query: 428 RSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALD-----EQCNG 576 R+ S ++ +Y+L FDG SRGNPG GAG ++ + V L +LGS+ T NEAEY L GLR A LGI +I V GDS+L+V Q+ G +K+++E LR +++EA++LK+ FAEF I HV+R N AD LAN A+D EQ +G Sbjct: 191 RAGSAEVSSADEYVLEFDGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSER--TVNEAEYAALCLGLRKAIELGITKIEVRGDSKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKISHVKREFNKHADHLANMAVDFGLSPEQNDG 342
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1084848184|gb|OGQ79599.1| (hypothetical protein A3F90_17430 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19]) HSP 1 Score: 120.939 bits (302), Expect = 1.331e-28 Identity = 69/144 (47.92%), Postives = 89/144 (61.81%), Query Frame = 0 Query: 435 NPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTF 578 +P ++LL+ DG SRGNPG G G VIY+ V VR L +LG TNN AEY GL+ GL A LG++R+ VE DS+L+VRQ+ GVY+V++E+L L+ +A AL I HV R N AD LANRA+DE F Sbjct: 4 SPQEEWLLQVDGASRGNPGEAGCGAVIYDPGGRV-VRELFRYLGRA---TNNVAEYRGLIMGLEEALRLGVKRLRVESDSELMVRQLNGVYRVKHEKLIPLFQKATALLRRLETCHIIHVRREHNRVADELANRAIDESQQKAF 143
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|693498928|emb|CEG01575.1| (Ribonuclease H1, N-terminal [Ostreococcus tauri]) HSP 1 Score: 128.257 bits (321), Expect = 1.390e-28 Identity = 68/144 (47.22%), Postives = 94/144 (65.28%), Query Frame = 0 Query: 428 RSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALD 571 R+ S ++ +Y+L FDG SRGNPG GAG ++ + V L +LGS+ T NEAEY L GLR A LGI +I V GDS+L+V Q+ G +K+++E LR +++EA++LK+ FAEF I HV+R N AD LAN A+D Sbjct: 135 RAGSAEVSSADEYVLEFDGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSER--TVNEAEYAALCLGLRKAIELGITKIEVRGDSKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKISHVKREFNKHADHLANMAVD 276
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|973086837|gb|KUK47380.1| (Fructose-2,6-bisphosphatase [Actinobacteria bacterium 66_15]) HSP 1 Score: 120.553 bits (301), Expect = 2.838e-28 Identity = 61/136 (44.85%), Postives = 91/136 (66.91%), Query Frame = 0 Query: 440 YLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCN 575 +++ DGGSRGNPGP GAG+V+ + + + RG S +LGS TNN AEY ++ G+RAA+ LG + V DS+L+V+Q+LG Y+V+NE L+ L+ A L+ F + + +HV R N +ADALAN A+D + + Sbjct: 5 WMVNTDGGSRGNPGPAGAGVVVRDPSGEIVARGGS-YLGS---ATNNVAEYEAMLWGMRAARALGATSLLVRADSELIVKQMLGQYRVKNEGLKPLFLRAQELRRAFEDVTFQHVRREANVEADALANEAMDARAD 136
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1125180850|gb|OLB34883.1| (hypothetical protein AUH11_16815 [Acidobacteria bacterium 13_2_20CM_57_17] >gi|1125493673|gb|OLE15277.1| hypothetical protein AUG83_07730 [Acidobacteria bacterium 13_1_20CM_4_57_11]) HSP 1 Score: 120.939 bits (302), Expect = 9.184e-28 Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 0 Query: 444 FDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDE 572 DGGSRGNPGP G+VI + + V L ++G +TNN AEY+GL+A + A++ GIR + +E DS+L+V+Q+ G YKV++E LR L+ A + + F F I HV R QN +ADALAN ALDE Sbjct: 1 MDGGSRGNPGPAAYGVVIRDGRGEI-VAKLKKYIGR---MTNNVAEYYGLIAAMDYAQSHGIRALRIESDSELLVKQMRGQYKVKSEDLRPLFERAQKMSKGFDSFRIEHVYREQNREADALANEALDE 125 The following BLAST results are available for this feature:
BLAST of EWM24965.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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