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Properties
| Property Name | Value |
|---|
| Product | ribonuclease h |
| Orig transcript id | gnl|cribi|Naga_100148g13.7157.mrna |
| Orig protein id | gnl|cribi|Naga_100148g13.7157 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:709556..711672 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5734 ID=rna5734|Name=rna5734|organism=Nannochloropsis gaditana|type=mRNA|length=1921bp
ACCATGTATGGGACCGTCCACAACGAGATTCTGACAAAGTACACGTAAAT
AGCCCAGAATATTGGCAGTATCCACTGTCATGCCCAGCCATGTCCTCATT
ATTGTTATTTTGTCCTGTCGCCCTAGCAGCGCTGGGGCGTTCGTGCCCGA
AGCAACTTGAAGACTTGAAGCGGCGAAATTGAGGCTGGCAAATAGTATAC
TTCCCCCTTTCCGAGGGCGCCACAGAACGACAGGTGGATTTTCCATAATC
TCATCAAACGACCAAAAAGGCGATGGAAGATGGAACAATTTTTGATATAT
CGACCTGGCCAAGTCTTTCCTGAGCTTACCTCCATTCCTCCATCCTCCCT
CCAGGAGGCGAGCTCGTCTTTCGACAATTTGGCCGCAGATATGTACCAAG
ACATGTTGTCGGGTCTGTCCCGCTTTTACACGGTAGAATCGATCGATGGA
GAAGCTCTTTTTGGCATCCGATTGCCCTTAGCTCTGGCCTATGGCTTGTT
ATGCACCGCGTCTTTCTTCGGGAGCGGGATTGTGCTTGGGAAAGTCTCTG
CCACCTACCGGCGGTTGCCTAAACAGGCGCGTACGGACTGGGACAACCGC
ATGGTGGCCTTAGGACATGCTGTCATTATGAGCTATCGCGCCTTTCGCTA
CTGGATCGTCTTGAAGCCCCTTTTCGGGCACACTTTTTCCCTCCTCTCGA
TCGCCCCGGCCTTGGACATGTACGAAAAGGACACCATGCGGATCATGATA
GGCTACATGCTCTATGACCTGGTCGTTGAATTGGCTACACCCGCCGTCTA
CGACTACGCGGTCCTTTTCCATCACCTGGCCGGGATCCTCTCTCACTGGC
ACACCTTGCAGACCAACGACGTGGCTTCAGGATGGTACACCATGCTCGTC
TACCTTGCTGAGGGCTCCACGCCAATCCTACACACGGCCTGGATGATGAA
CACGGTGGGGCTCTCGGACGGTGTCGCTTTCAAGCTACTGACCCTCGCAC
TCCTGGTCACCTTTTTCGTCGTCAGGATCCTCGTCTCCCCCTTGCTGGCC
TATACTTACTTGGCGCCCGGCAACCGTCATTTGTACGACGGTCGAGACGG
TGTTTTCTACTTCCAGCTATTCATCGTTTTCGCCTTCGCAGGCCTCAATT
ACTTCTGGTTCTACAAGCTGCTGACCTTGATCTACCGCAAAGCCCGCGGG
ATCAAGACACCCATCAGCTCGCCCGTCAAGAAGCGCAGCAAGCCCGCCAC
GGAGGGCAGCAAGTCGAAAAAAGCGTGATCGGACAATAGCCACATGCATT
TTGAATCACCGTCCAACGGTTGAGAAACAAGGACGATGGATGAGAGGGGG
CCTGGTAAAGCCTTCAAGGGAGCGAGTCTCATCAAGAAGGGACAACAGAT
GCGTCCAATAGACTGTGCGGCTTGGTACGGCGGGTGAAAAAAATGAATTT
TGCTGCAAATGGACCCTTTGATTCTTTTAAAAGAGCCACAGTTGCTGCTT
ACGTTGCTTCTCACCAGTCCAACCCTCCTTGTCATGTTGCTAGGCTCCCT
CCACCCTCCCTCTTCAGCGCCGAGTCCAGCTCCTTTCGTGCAAAATTGTT
CCTTCTCCATCTGACTGATCCCACAATTTTTAGATGAACCCTTCTTTACA
AAACTGGCTGCATAGGGCAGCATTGCAAGTTCGCTTTGCCTTGCCTCCCA
CTACCCATTCGAATCTGCGTCGTCTGCGTTTAAGGCTTCTTCGCCGACGA
GGGGGGGGCTCCATAGACCCATTCATATACCACGGACGTCAAGGTCTTCA
TTAAGGCTGTCAAGATAGAAGAAAGTGAATGGGGAAGGGCATTTAAGAAT
GTATGGGTGTGTTGGGGGGTTAAAAGGAAAGGTCACAACAGGAGAAGACA
ACATCCAGGCGGGGAAGTGGA back to topprotein sequence of rna5734 >rna5734-protein ID=rna5734-protein|Name=rna5734|organism=Nannochloropsis gaditana|type=polypeptide|length=596bp
MTDGAIGPAASPPCCSRISAQASKSQPGRAFLCRIITLLTLWKLGKGKMA
SSVRSNGVAALNATPLANVHVQWRRRATAGRGHFRNTFGAFISTNLRTQS
TIPMGTAAKKSSKLSGGTTPPPHRPRSSSGGTLTGDTGHVNPYQPHSPFL
DQPPAYSHLVFPGGDSKAASKAHQHTNSYLSHVLRLRLRTMDPSSLPPTS
SLASPLLAAEGEIVIEQGPGSNARKPQPAWCTQVWVGLGRGEREAVYGLI
AQGVAAAQALGLKNLQVAAPSAQVAREICGIDAVAESKGSKGSQGGDCSL
LTAHRKIQSMLKFFPFFSVSYRIVKEGHEEDMVLQPVPSLRGSQDGDEEE
AHPMPPTTLTPFRTPSTTGFGNGAEDSAVNSEEEDDEEGHARSRHDASPD
SPVHRASCPPSAPLPARSHVSKVGTGMRSMSPIINPTAQYLLRFDGGSRG
NPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAA
KTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFS
IRHVERSQNSDADALANRALDEQCNGTFDSGGLRLDYSKEADQVKE back to topmRNA from alignment at CM002466.1:709556..711672+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5734 ID=rna5734|Name=rna5734|organism=Nannochloropsis gaditana|type=mRNA|length=2117bp|location=Sequence derived from alignment at CM002466.1:709556..711672+ (Nannochloropsis gaditana)
GCTGGGCATGACAGTGGATACTGCCAATATTCTGGGCTATTTACGTGTAC
TTTGTCAGAATCTCGTTGTGGACGGTCCCATACATGGTATTTTTTGGCAG
GTCAAATGATTTCGCATgttggggggcggggtccCCTCTGAGGCGTCCAT
GCTGACTTCCATCTCACTGCCACGATTAACCCATTCCACAGGGTACCCAA
GCACCCCTGCCTTGTGGATGGGTTGcagaaggaggtgaaagTGCTCCACT
TCCCTAGCGTGCTGTTGTGTCCTTCATTCACATGACAGACGGGGCGATTG
GACCCGCGGCTTCTCCCCCGTGCTGCTCGAGGATTAGCGCGCAAGCCTCT
AAGTCACAACCCGGACGTGCCTTTTTGTGCCGTATCATCACATTGCTGAC
CCTTTGGAAACTTGgcaaggggaaaatggcTTCCTCTGTCCGTTCCAATG
GAGTCGCAGCGCTAAATGCAACTCCTCTCGCAAACGTGCATGTCCAGTGG
CGGAGACGCGCAACAGCAGGACGAGGTCATTTTCGCAATACTTTTGGAGC
CTTCATCAGCACAAATTTAAGGACGCAGTCGACCATACCTATGGGTACGG
CTGCGAAAAAGAGCTCGAAGCTTTCCGGTGGTACCACACCACCTCCACAC
CGTCCGAGAAGTAGCAGCGGTGGCACTCTCACGGGCGACACTGGCCACGT
GAACCCATACCAACCGCACAGCCCTTTCCTGGATCAGCCTCCCGCCTATT
CTCACCTTGTCTTTCCCGGTGGGGACTCCAAGGCTGCCAGCAAAGCCCAT
CAGCACACGAACTCGTACCTCTCCCACGTTCTGCGCCTCCGTCTCCGCAC
CATGgatccctcttccctgcctccaacctcctcccttgcctcgcCACTCC
TCGCAGCCGAGGGAGAAATTGTCATTGAGCAGGGACCTGGCTCCAATGCC
CGAAAGCCACAGCCTGCCTGGTGCACACAAGTGTGGGTCGGCCTGGGGCg
tggcgagagggaggccgttTACGGTTTAATTGCGCAGGGCGTGGCCGCTG
CACAGGCTCTGGGCCTTAAGAATTTGCAGGTGGCCGCCCCGTCGGCACAA
GTGGCGCGAGAGATTTGTGGAATCGACGCGGTGGCGGAGAGCAAGGGCTC
CAAGGGGAGCCAAGGCGGCGATTGCTCCTTGCTTACGGCCCATCGAAAGA
TCCAATCGATGCTCAagttcttccccttcttctccgtctcgTATCGTATC
GTGAAAGAGGGGCACGAGGAGGATATGGTGCTCCAACCCGTCCCCAGCCT
GAGAGGCAGCCAAgatggggacgaggaggaagctcaCCCTATGCCACCGA
CAACGCTCACTCCTTTTCGCACACCTTCCACTACTGGTTTTGGCAATGGT
GCGGAAGACTCCGCTGTCAAttccgaggaagaggatgacgaagaagGACA
CGCTCGATCAAGGCACGATGCCTCACCGGACTCCCCCGTCCATAGAGCAT
CATGTCCTCCAagcgccccccttcccgcgcgAAGCCACGTTTCGAAGGTC
GGCACTGGCATGCGGTCCATGTCTCCGATAATAAACCCTACTGCTCAGTA
TCTGCTCCGCTTTGACGGCGGCTCCCGGGGAAatccaggccctggaggcg
cgGGTATTGTTATCTACGAGCAGGCCTCTCTTGTGCAGGTGCGGGGCTTG
TCTCTGTGGCTGGGATCTGACCCACCGCTGACAAATAACGAGGCAGAATA
CCATGGATTGGTCGCAGGTCTGAGAGCAGCCAAGACATTGGGTATTCGGA
GGATTTGCGTCGAGGGAGATTCTCAACTGGTGGTACGGCAGATCTTAGGG
GTGTACAAAGTCAGGAACGAACGTCTGAGAGTGTTGTATTCAGAGGCCAT
GGCGTTGAAGGAAAACTTTGCCGAGTTTTCGATCCGGCATGTCGAGCGGT
CGCAGAACTCGGATGCAGATGCGTTAGCCAACAGAGCTTTAGATGAGCAA
TGTAATGGGACGTTTGATTCGGGCGGGTTACGGCTTGATTACTCAAAAGA
GGCTGACCAGGTTAAAGAATGATCATTCTCACAAATCGAAAGGAAGCATC
AGGATTGTCTCTATTTT back to topCoding sequence (CDS) from alignment at CM002466.1:709556..711672+ >rna5734 ID=rna5734|Name=rna5734|organism=Nannochloropsis gaditana|type=CDS|length=1791bp|location=Sequence derived from alignment at CM002466.1:709556..711672+ (Nannochloropsis gaditana)
ATGACAGACGGGGCGATTGGACCCGCGGCTTCTCCCCCGTGCTGCTCGAG
GATTAGCGCGCAAGCCTCTAAGTCACAACCCGGACGTGCCTTTTTGTGCC
GTATCATCACATTGCTGACCCTTTGGAAACTTGgcaaggggaaaatggcT
TCCTCTGTCCGTTCCAATGGAGTCGCAGCGCTAAATGCAACTCCTCTCGC
AAACGTGCATGTCCAGTGGCGGAGACGCGCAACAGCAGGACGAGGTCATT
TTCGCAATACTTTTGGAGCCTTCATCAGCACAAATTTAAGGACGCAGTCG
ACCATACCTATGGGTACGGCTGCGAAAAAGAGCTCGAAGCTTTCCGGTGG
TACCACACCACCTCCACACCGTCCGAGAAGTAGCAGCGGTGGCACTCTCA
CGGGCGACACTGGCCACGTGAACCCATACCAACCGCACAGCCCTTTCCTG
GATCAGCCTCCCGCCTATTCTCACCTTGTCTTTCCCGGTGGGGACTCCAA
GGCTGCCAGCAAAGCCCATCAGCACACGAACTCGTACCTCTCCCACGTTC
TGCGCCTCCGTCTCCGCACCATGgatccctcttccctgcctccaacctcc
tcccttgcctcgcCACTCCTCGCAGCCGAGGGAGAAATTGTCATTGAGCA
GGGACCTGGCTCCAATGCCCGAAAGCCACAGCCTGCCTGGTGCACACAAG
TGTGGGTCGGCCTGGGGCgtggcgagagggaggccgttTACGGTTTAATT
GCGCAGGGCGTGGCCGCTGCACAGGCTCTGGGCCTTAAGAATTTGCAGGT
GGCCGCCCCGTCGGCACAAGTGGCGCGAGAGATTTGTGGAATCGACGCGG
TGGCGGAGAGCAAGGGCTCCAAGGGGAGCCAAGGCGGCGATTGCTCCTTG
CTTACGGCCCATCGAAAGATCCAATCGATGCTCAagttcttccccttctt
ctccgtctcgTATCGTATCGTGAAAGAGGGGCACGAGGAGGATATGGTGC
TCCAACCCGTCCCCAGCCTGAGAGGCAGCCAAgatggggacgaggaggaa
gctcaCCCTATGCCACCGACAACGCTCACTCCTTTTCGCACACCTTCCAC
TACTGGTTTTGGCAATGGTGCGGAAGACTCCGCTGTCAAttccgaggaag
aggatgacgaagaagGACACGCTCGATCAAGGCACGATGCCTCACCGGAC
TCCCCCGTCCATAGAGCATCATGTCCTCCAagcgccccccttcccgcgcg
AAGCCACGTTTCGAAGGTCGGCACTGGCATGCGGTCCATGTCTCCGATAA
TAAACCCTACTGCTCAGTATCTGCTCCGCTTTGACGGCGGCTCCCGGGGA
AatccaggccctggaggcgcgGGTATTGTTATCTACGAGCAGGCCTCTCT
TGTGCAGGTGCGGGGCTTGTCTCTGTGGCTGGGATCTGACCCACCGCTGA
CAAATAACGAGGCAGAATACCATGGATTGGTCGCAGGTCTGAGAGCAGCC
AAGACATTGGGTATTCGGAGGATTTGCGTCGAGGGAGATTCTCAACTGGT
GGTACGGCAGATCTTAGGGGTGTACAAAGTCAGGAACGAACGTCTGAGAG
TGTTGTATTCAGAGGCCATGGCGTTGAAGGAAAACTTTGCCGAGTTTTCG
ATCCGGCATGTCGAGCGGTCGCAGAACTCGGATGCAGATGCGTTAGCCAA
CAGAGCTTTAGATGAGCAATGTAATGGGACGTTTGATTCGGGCGGGTTAC
GGCTTGATTACTCAAAAGAGGCTGACCAGGTTAAAGAATGA back to top
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