EWM24965.1, cds5719 (CDS) Nannochloropsis gaditana

Overview
NameEWM24965.1
Unique Namecds5719
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:709837..711627 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24965.1
Productribonuclease h
Orig transcript idgnl|cribi|Naga_100148g13.7157.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:709837..711627 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
IPR012337RNaseH-like_dom
Homology
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|585106596|gb|EWM24965.1| (ribonuclease h [Nannochloropsis gaditana])

HSP 1 Score: 1224.92 bits (3168), Expect = 0.000e+0
Identity = 596/596 (100.00%), Postives = 596/596 (100.00%), Query Frame = 0
Query:    1 MTDGAIGPAASPPCCSRISAQASKSQPGRAFLCRIITLLTLWKLGKGKMASSVRSNGVAALNATPLANVHVQWRRRATAGRGHFRNTFGAFISTNLRTQSTIPMGTAAKKSSKLSGGTTPPPHRPRSSSGGTLTGDTGHVNPYQPHSPFLDQPPAYSHLVFPGGDSKAASKAHQHTNSYLSHVLRLRLRTMDPSSLPPTSSLASPLLAAEGEIVIEQGPGSNARKPQPAWCTQVWVGLGRGEREAVYGLIAQGVAAAQALGLKNLQVAAPSAQVAREICGIDAVAESKGSKGSQGGDCSLLTAHRKIQSMLKFFPFFSVSYRIVKEGHEEDMVLQPVPSLRGSQDGDEEEAHPMPPTTLTPFRTPSTTGFGNGAEDSAVNSEEEDDEEGHARSRHDASPDSPVHRASCPPSAPLPARSHVSKVGTGMRSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFDSGGLRLDYSKEADQVKE 596
            MTDGAIGPAASPPCCSRISAQASKSQPGRAFLCRIITLLTLWKLGKGKMASSVRSNGVAALNATPLANVHVQWRRRATAGRGHFRNTFGAFISTNLRTQSTIPMGTAAKKSSKLSGGTTPPPHRPRSSSGGTLTGDTGHVNPYQPHSPFLDQPPAYSHLVFPGGDSKAASKAHQHTNSYLSHVLRLRLRTMDPSSLPPTSSLASPLLAAEGEIVIEQGPGSNARKPQPAWCTQVWVGLGRGEREAVYGLIAQGVAAAQALGLKNLQVAAPSAQVAREICGIDAVAESKGSKGSQGGDCSLLTAHRKIQSMLKFFPFFSVSYRIVKEGHEEDMVLQPVPSLRGSQDGDEEEAHPMPPTTLTPFRTPSTTGFGNGAEDSAVNSEEEDDEEGHARSRHDASPDSPVHRASCPPSAPLPARSHVSKVGTGMRSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFDSGGLRLDYSKEADQVKE
Sbjct:    1 MTDGAIGPAASPPCCSRISAQASKSQPGRAFLCRIITLLTLWKLGKGKMASSVRSNGVAALNATPLANVHVQWRRRATAGRGHFRNTFGAFISTNLRTQSTIPMGTAAKKSSKLSGGTTPPPHRPRSSSGGTLTGDTGHVNPYQPHSPFLDQPPAYSHLVFPGGDSKAASKAHQHTNSYLSHVLRLRLRTMDPSSLPPTSSLASPLLAAEGEIVIEQGPGSNARKPQPAWCTQVWVGLGRGEREAVYGLIAQGVAAAQALGLKNLQVAAPSAQVAREICGIDAVAESKGSKGSQGGDCSLLTAHRKIQSMLKFFPFFSVSYRIVKEGHEEDMVLQPVPSLRGSQDGDEEEAHPMPPTTLTPFRTPSTTGFGNGAEDSAVNSEEEDDEEGHARSRHDASPDSPVHRASCPPSAPLPARSHVSKVGTGMRSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFDSGGLRLDYSKEADQVKE 596          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1210526307|dbj|GAX15225.1| (hypothetical protein FisN_12Lh072 [Fistulifera solaris])

HSP 1 Score: 132.494 bits (332), Expect = 6.143e-30
Identity = 65/150 (43.33%), Postives = 98/150 (65.33%), Query Frame = 0
Query:  433 IINPTAQYLLRFDGGSRGNP-GPGGAGIVIYEQASLVQVRGLSLWLGSD--PPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFD 579
            II+P   YLL+FDGG+RGNP G  G G+V+++       +G  +W G    PP++NN AEYH ++ GL  AK+LGI+RI  +GDS+LVV+Q+ GVY+VR+ +L+ L+     + + F + S+ H+ R  N  AD LAN A+D + +  F+
Sbjct:  266 IIDPQRTYLLQFDGGARGNPAGKSGCGMVLFDD------QGHEVWCGWKFLPPMSNNMAEYHSILLGLLCAKSLGIQRIQAQGDSELVVKQLNGVYQVRDPKLKELWGPTRDVMQEFQDISVTHIAREYNKRADWLANHAMDTETSFGFE 409          

HSP 2 Score: 65.855 bits (159), Expect = 7.734e-8
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 0
Query:  431 SPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMAL-KENFAEFSIRHVERSQNSDADALANRAL 570
            S ++NP   Y+L+  G S+ N    G GIV+ + +S +  R    +  SD  L+   AEY  L+ GL  A  LG++ + +E D  ++ +Q+ G++ +    ++ LY + M L +E    F +R V   +  +A  LA RAL
Sbjct:   52 SLLLNPQHTYILQTKGYSKLNADGTGIGIVLKDSSSTLTARH---YFPSDRALS--LAEYSALIVGLHYAIQLGVQHLMLETDHAVLAKQLQGIFPMEKRIMKPLYWQVMHLVEERLQTFRVRIVPNVE--EATELAKRAL 185          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1026759433|gb|OAE21357.1| (hypothetical protein AXG93_891s1050 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 127.872 bits (320), Expect = 2.261e-29
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 0
Query:  431 SPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRAL 570
            SP+I+  A Y L +DG S+GNPG  GAG +I      V V  L++ LG     TNN AEY GL+AGL+ A  LGI+RI  +GDS+LV +Q+ GV+ V+NE L VL  EA  L  +F  F IRHV+R  NS ADALAN+A+
Sbjct:  152 SPVIDHDAVYQLEYDGASKGNPGHAGAGALIRHPDGTV-VCELTVGLGK---ATNNVAEYRGLIAGLKKALDLGIQRIQAQGDSKLVTQQVRGVWAVKNENLAVLCKEARRLVTSFKGFEIRHVDREWNSAADALANKAV 287          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1084712881|gb|OGP58163.1| (hypothetical protein A2V67_05800 [Deltaproteobacteria bacterium RBG_13_61_14])

HSP 1 Score: 123.635 bits (309), Expect = 5.548e-29
Identity = 62/135 (45.93%), Postives = 86/135 (63.70%), Query Frame = 0
Query:  442 LRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNG 576
            +  DG +RGNPGP GAG+VI+    + +      +LG     TNN+AEY  LV  LR A+ LG R++ V  DS+L+V+Q+LG Y+V+N  L+VL+ +A  LK  F  F+I H+ R  N +AD LANRA+DE   G
Sbjct:   60 VNIDGAARGNPGPAGAGVVIWRGNKVFE--EFCEYLGK---ATNNQAEYRALVLALRRARELGARKVAVRSDSELLVKQLLGEYRVKNPELKVLFQQAQDLKRGFKNFTIEHIPREDNREADRLANRAIDEFAEG 189          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1210520992|dbj|GAX20225.1| (hypothetical protein FisN_12Hh072 [Fistulifera solaris])

HSP 1 Score: 129.798 bits (325), Expect = 6.256e-29
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = 0
Query:  433 IINPTAQYLLRFDGGSRGNP-GPGGAGIVIYEQASLVQVRGLSLWLGSD---PPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTFD 579
            II+P   YLL+FDGG+RGNP G  G G+V+++       +G  +W G     PP++NN AEYH ++ GL  AK+LGI+RI  +GDS+LVV+Q+ GVY+VR+ +L+ L+     + + F   S+ H+ R  N  AD LAN A+D + +  F+
Sbjct:  288 IIDPQRTYLLQFDGGARGNPAGKSGCGMVLFDD------QGHEVWCGWKYLKPPMSNNMAEYHSILLGLLCAKSLGIQRIQAQGDSELVVKQLNGVYQVRDPKLKELWGPTRDVMKEFQTISVTHIAREYNKRADWLANHAMDTETSFGFE 432          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|308807192|ref|XP_003080907.1| (putative RNase (ISS) [Ostreococcus tauri])

HSP 1 Score: 127.872 bits (320), Expect = 6.734e-29
Identity = 71/154 (46.10%), Postives = 98/154 (63.64%), Query Frame = 0
Query:  428 RSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALD-----EQCNG 576
            R+ S  ++   +Y+L FDG SRGNPG  GAG ++  +     V  L  +LGS+   T NEAEY  L  GLR A  LGI +I V GDS+L+V Q+ G +K+++E LR +++EA++LK+ FAEF I HV+R  N  AD LAN A+D     EQ +G
Sbjct:  191 RAGSAEVSSADEYVLEFDGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSER--TVNEAEYAALCLGLRKAIELGITKIEVRGDSKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKISHVKREFNKHADHLANMAVDFGLSPEQNDG 342          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1084848184|gb|OGQ79599.1| (hypothetical protein A3F90_17430 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19])

HSP 1 Score: 120.939 bits (302), Expect = 1.331e-28
Identity = 69/144 (47.92%), Postives = 89/144 (61.81%), Query Frame = 0
Query:  435 NPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCNGTF 578
            +P  ++LL+ DG SRGNPG  G G VIY+    V VR L  +LG     TNN AEY GL+ GL  A  LG++R+ VE DS+L+VRQ+ GVY+V++E+L  L+ +A AL        I HV R  N  AD LANRA+DE     F
Sbjct:    4 SPQEEWLLQVDGASRGNPGEAGCGAVIYDPGGRV-VRELFRYLGRA---TNNVAEYRGLIMGLEEALRLGVKRLRVESDSELMVRQLNGVYRVKHEKLIPLFQKATALLRRLETCHIIHVRREHNRVADELANRAIDESQQKAF 143          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|693498928|emb|CEG01575.1| (Ribonuclease H1, N-terminal [Ostreococcus tauri])

HSP 1 Score: 128.257 bits (321), Expect = 1.390e-28
Identity = 68/144 (47.22%), Postives = 94/144 (65.28%), Query Frame = 0
Query:  428 RSMSPIINPTAQYLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALD 571
            R+ S  ++   +Y+L FDG SRGNPG  GAG ++  +     V  L  +LGS+   T NEAEY  L  GLR A  LGI +I V GDS+L+V Q+ G +K+++E LR +++EA++LK+ FAEF I HV+R  N  AD LAN A+D
Sbjct:  135 RAGSAEVSSADEYVLEFDGASRGNPGEAGAGALLRRKRDDRVVEELLEYLGSER--TVNEAEYAALCLGLRKAIELGITKIEVRGDSKLIVNQVDGSFKLKSENLRSMHAEAVSLKKKFAEFKISHVKREFNKHADHLANMAVD 276          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|973086837|gb|KUK47380.1| (Fructose-2,6-bisphosphatase [Actinobacteria bacterium 66_15])

HSP 1 Score: 120.553 bits (301), Expect = 2.838e-28
Identity = 61/136 (44.85%), Postives = 91/136 (66.91%), Query Frame = 0
Query:  440 YLLRFDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDEQCN 575
            +++  DGGSRGNPGP GAG+V+ + +  +  RG S +LGS    TNN AEY  ++ G+RAA+ LG   + V  DS+L+V+Q+LG Y+V+NE L+ L+  A  L+  F + + +HV R  N +ADALAN A+D + +
Sbjct:    5 WMVNTDGGSRGNPGPAGAGVVVRDPSGEIVARGGS-YLGS---ATNNVAEYEAMLWGMRAARALGATSLLVRADSELIVKQMLGQYRVKNEGLKPLFLRAQELRRAFEDVTFQHVRREANVEADALANEAMDARAD 136          
BLAST of EWM24965.1 vs. NCBI_GenBank
Match: gi|1125180850|gb|OLB34883.1| (hypothetical protein AUH11_16815 [Acidobacteria bacterium 13_2_20CM_57_17] >gi|1125493673|gb|OLE15277.1| hypothetical protein AUG83_07730 [Acidobacteria bacterium 13_1_20CM_4_57_11])

HSP 1 Score: 120.939 bits (302), Expect = 9.184e-28
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 0
Query:  444 FDGGSRGNPGPGGAGIVIYEQASLVQVRGLSLWLGSDPPLTNNEAEYHGLVAGLRAAKTLGIRRICVEGDSQLVVRQILGVYKVRNERLRVLYSEAMALKENFAEFSIRHVERSQNSDADALANRALDE 572
             DGGSRGNPGP   G+VI +    + V  L  ++G    +TNN AEY+GL+A +  A++ GIR + +E DS+L+V+Q+ G YKV++E LR L+  A  + + F  F I HV R QN +ADALAN ALDE
Sbjct:    1 MDGGSRGNPGPAAYGVVIRDGRGEI-VAKLKKYIGR---MTNNVAEYYGLIAAMDYAQSHGIRALRIESDSELLVKQMRGQYKVKSEDLRPLFERAQKMSKGFDSFRIEHVYREQNREADALANEALDE 125          
The following BLAST results are available for this feature:
BLAST of EWM24965.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106596|gb|EWM24965.1|0.000e+0100.00ribonuclease h [Nannochloropsis gaditana][more]
gi|1210526307|dbj|GAX15225.1|6.143e-3043.33hypothetical protein FisN_12Lh072 [Fistulifera sol... [more]
gi|1026759433|gb|OAE21357.1|2.261e-2951.43hypothetical protein AXG93_891s1050 [Marchantia po... [more]
gi|1084712881|gb|OGP58163.1|5.548e-2945.93hypothetical protein A2V67_05800 [Deltaproteobacte... [more]
gi|1210520992|dbj|GAX20225.1|6.256e-2943.05hypothetical protein FisN_12Hh072 [Fistulifera sol... [more]
gi|308807192|ref|XP_003080907.1|6.734e-2946.10putative RNase (ISS) [Ostreococcus tauri][more]
gi|1084848184|gb|OGQ79599.1|1.331e-2847.92hypothetical protein A3F90_17430 [Deltaproteobacte... [more]
gi|693498928|emb|CEG01575.1|1.390e-2847.22Ribonuclease H1, N-terminal [Ostreococcus tauri][more]
gi|973086837|gb|KUK47380.1|2.838e-2844.85Fructose-2,6-bisphosphatase [Actinobacteria bacter... [more]
gi|1125180850|gb|OLB34883.1|9.184e-2848.06hypothetical protein AUH11_16815 [Acidobacteria ba... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5734rna5734Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications