EWM24966.1, cds5699 (CDS) Nannochloropsis gaditana

Overview
NameEWM24966.1
Unique Namecds5699
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:653961..655706 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24966.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100186g9.5605.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:653961..655706 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR017884SANT_dom
IPR006447Myb_dom_plants
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|585106598|gb|EWM24966.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1212.59 bits (3136), Expect = 0.000e+0
Identity = 581/581 (100.00%), Postives = 581/581 (100.00%), Query Frame = 0
Query:    1 MPGLSLPLKLKRRLNIHSLYLNMHHIILHGSYSYTGRAVAKLLTLHFRLASCAMDPAISAASSANVSWNDTAIITRPIASSDWTTEEHARFLEGLKQYGRSWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPPRTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFLKKAQCEGRLESGSWRSRFKLKNPRGVAKRHANRRKKVLARIRGSSGRSPYGHRHWRYGDHVGEEGEEEGDDVEEDEESGSERLEGGHDATSVCGTLSTYTTRSGRVVTFSRPSQHVQDTNSEAEENEERSHTADGIYVGEMPTYTHDESALLVESGMTIDTGVHTGRLGMAIVRDDDVKEHHAPKEGYEELSRDVSGVSASIPTPRTMVDVLSAFTMDPEGFPQWEYSGRREQGASLHPWTENDTVSARSGSDVFESSTKCVPQGYAALTSSVSSAATSAASNFSDSSCADGLKTQRDDMVMMMCSADDSLFWESESYNEEQDDDNSLTRPPVSPNADAANEEWISTFEQVPFM 581
            MPGLSLPLKLKRRLNIHSLYLNMHHIILHGSYSYTGRAVAKLLTLHFRLASCAMDPAISAASSANVSWNDTAIITRPIASSDWTTEEHARFLEGLKQYGRSWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPPRTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFLKKAQCEGRLESGSWRSRFKLKNPRGVAKRHANRRKKVLARIRGSSGRSPYGHRHWRYGDHVGEEGEEEGDDVEEDEESGSERLEGGHDATSVCGTLSTYTTRSGRVVTFSRPSQHVQDTNSEAEENEERSHTADGIYVGEMPTYTHDESALLVESGMTIDTGVHTGRLGMAIVRDDDVKEHHAPKEGYEELSRDVSGVSASIPTPRTMVDVLSAFTMDPEGFPQWEYSGRREQGASLHPWTENDTVSARSGSDVFESSTKCVPQGYAALTSSVSSAATSAASNFSDSSCADGLKTQRDDMVMMMCSADDSLFWESESYNEEQDDDNSLTRPPVSPNADAANEEWISTFEQVPFM
Sbjct:    1 MPGLSLPLKLKRRLNIHSLYLNMHHIILHGSYSYTGRAVAKLLTLHFRLASCAMDPAISAASSANVSWNDTAIITRPIASSDWTTEEHARFLEGLKQYGRSWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPPRTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFLKKAQCEGRLESGSWRSRFKLKNPRGVAKRHANRRKKVLARIRGSSGRSPYGHRHWRYGDHVGEEGEEEGDDVEEDEESGSERLEGGHDATSVCGTLSTYTTRSGRVVTFSRPSQHVQDTNSEAEENEERSHTADGIYVGEMPTYTHDESALLVESGMTIDTGVHTGRLGMAIVRDDDVKEHHAPKEGYEELSRDVSGVSASIPTPRTMVDVLSAFTMDPEGFPQWEYSGRREQGASLHPWTENDTVSARSGSDVFESSTKCVPQGYAALTSSVSSAATSAASNFSDSSCADGLKTQRDDMVMMMCSADDSLFWESESYNEEQDDDNSLTRPPVSPNADAANEEWISTFEQVPFM 581          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|585113277|gb|EWM30605.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 164.851 bits (416), Expect = 1.472e-42
Identity = 84/169 (49.70%), Postives = 110/169 (65.09%), Query Frame = 0
Query:   83 WTTEEHARFLEGLKQYGR-SWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPPRTASTKG----------------KDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFLKKAQCEG 234
            WT  EH  FLEGL+++G+ +W+ IS  ++ TR+ E+++ +A  Y + Q K     + A+ KG                      A +KEGHWTDEEHE FL+CW +YGKSWKK+S+++ TR+NEQIRTHAQKYF KL +LR  GYEG+Y MDGTRHLTKTFL   Q  G
Sbjct:  122 WTEAEHDLFLEGLREHGKGAWKLISEKVVRTRSAEQVRIHAQKYFLRQSKQ-EKKKNAANKGAMAEIEGGGKESNGGGGPDGPGAGSKEGHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFLGGTQPPG 289          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 86.2705 bits (212), Expect = 3.520e-14
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0
Query:  137 RTASTKGKDGASAARAKEGH----WTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDG 218
            ++A+T+G  G +AA    G     WT EEH  FL+   ++GK WKKI+ ++K+R+  QIRTHAQKYF KL + R  G EG  TM+G
Sbjct:   77 QSAATEGAPGQAAASLAPGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEG 162          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 85.5001 bits (210), Expect = 5.118e-14
Identity = 41/86 (47.67%), Postives = 55/86 (63.95%), Query Frame = 0
Query:  137 RTASTKGKDGASAARAKEGH----WTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDG 218
            ++A+T+G  G  AA    G     WT EEH  FL+   ++GK WKKI+ ++K+R+  QIRTHAQKYF KL + R  G EG  TM+G
Sbjct:   78 QSATTEGASGQGAASLAPGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEG 163          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|298707767|emb|CBJ26084.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.1149 bits (209), Expect = 6.265e-14
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   82 DWTTEEHARFLEGLKQYGRSWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTP---------PRTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTK 201
            +W  +EH RF+EG+K YGRSW  +++++  TRT  ++  +A ++ +N      P         P+            A    G W D+EHE F+K    YG+SW  ++++M TR+NEQ+R HA++Y  K
Sbjct:  172 EWEGDEHDRFMEGVKLYGRSWVDVASVVR-TRTNRQVIMHA-MHRLNDDLSSKPSLRACTSTGPQATDRAPPPAQPRAAVNGGDWGDDEHEAFMKGVKIYGRSWVSVARLMGTRTNEQVRAHAKQYLNK 298          

HSP 2 Score: 67.781 bits (164), Expect = 2.152e-8
Identity = 39/143 (27.27%), Postives = 71/143 (49.65%), Query Frame = 0
Query:   79 ASSDWTTEEHARFLEGLKQYGRSWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPPRTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKY----FTKLDQLRTCGYEGSYTMD 217
             SS+W  EEH RF++G +++G++W  ++ ++  TR   +++ Y++ ++          RT       G   +  K G W  +EH+ F++    YG+SW  ++ V++TR+N Q+  HA        +    LR C   G    D
Sbjct:  111 GSSEWDDEEHERFVKGFERHGKAWAEVAQVVR-TRDEGQVQGYSARWVT---------RTG------GLHESFRKIGEWEGDEHDRFMEGVKLYGRSWVDVASVVRTRTNRQVIMHAMHRLNDDLSSKPSLRACTSTGPQATD 237          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|585111934|gb|EWM29405.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 85.5001 bits (210), Expect = 9.056e-14
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 0
Query:  136 PRTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDG 218
            P T+    +D  S+ R   G W +EEH  FLK    YGKSWKKISQ++KTR+  QIRTHAQKY  K+++ +  G  G+  M+G
Sbjct:  143 PSTSPPSKRD--SSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNG 223          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.8777 bits (198), Expect = 1.861e-12
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  134 TPPRTASTKGKDGASAARAKE-GHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDG 218
            TPP   +T     +  +  +  G WT EEH  FL+   ++GK WKKI+ ++K+R+  QIRTHAQKYF KL + R  G EG   M+G
Sbjct:   96 TPPVDMATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEG 181          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|219128116|ref|XP_002184267.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404498|gb|EEC44445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 79.337 bits (194), Expect = 1.125e-11
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  134 TPPRTASTKGKDGASAARAKE-GHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDG 218
            TPP   +T     +  +  +  G WT EEH  FL+   ++GK WKKI+ ++K+R+  QIRTHAQKYF KL + R  G EG   M+G
Sbjct:   96 TPPVDMATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEG 181          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|1173946604|gb|OQR95117.1| (hypothetical protein ACHHYP_00385 [Achlya hypogyna])

HSP 1 Score: 73.559 bits (179), Expect = 1.486e-11
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 0
Query:  145 DGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHL 222
            D  S +  + G W  EEH+ FL+    YGK+WKK++QV+ TRS  QIRTHAQK+F ++ Q R      ++   G +H+
Sbjct:   47 DDESPSTKRGGRWLAEEHQLFLEGLRAYGKNWKKVAQVVPTRSTVQIRTHAQKFFKRMSQERHLPLSPTHLGKGDQHI 124          
BLAST of EWM24966.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 77.7962 bits (190), Expect = 2.204e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 0
Query:  150 ARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYT-MDGTR 220
             R   G WT EEH  FLK    +GK WKKI++++KTR+  QIRTHAQKYF KL + +  G+ G    M+GTR
Sbjct:   96 GRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGTR 167          
The following BLAST results are available for this feature:
BLAST of EWM24966.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106598|gb|EWM24966.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|585113277|gb|EWM30605.1|1.472e-4249.70SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|1210516787|dbj|GAX24276.1|3.520e-1447.67protein MYSM1 [Fistulifera solaris][more]
gi|1210512502|dbj|GAX28359.1|5.118e-1447.67protein MYSM1 [Fistulifera solaris][more]
gi|298707767|emb|CBJ26084.1|6.265e-1434.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|585111934|gb|EWM29405.1|9.056e-1448.19SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|219128113|ref|XP_002184266.1|1.861e-1244.19predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|219128116|ref|XP_002184267.1|1.125e-1144.19predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1173946604|gb|OQR95117.1|1.486e-1142.31hypothetical protein ACHHYP_00385 [Achlya hypogyna... [more]
gi|585113115|gb|EWM30452.1|2.204e-1151.39SANT/Myb domain protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5714rna5714Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications