rna5714, rna5714 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5714
Unique Name	rna5714
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1206
Alignment location	CM002466.1:653961..656179 +

Link to JBrowse

Properties


Property Name	Value
Product	SANT/Myb domain protein
Orig transcript id	gnl\|cribi\|Naga_100186g9.5605.mrna
Orig protein id	gnl\|cribi\|Naga_100186g9.5605
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:653961..656179 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100186g9	gene5519	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5714	rna5714-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24966.1	cds5699	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:653961..656179+
coding sequence from alignment at CM002466.1:653961..656179+

mRNA sequence

>rna5714 ID=rna5714|Name=rna5714|organism=Nannochloropsis gaditana|type=mRNA|length=1206bp
ATGGGAGAGGGTGGGGTGCACGTGAATGGAACCGCGGCGACGGGCGGCGG
AGGCGGGGAGGAGCGGGGAGGGAGGGGTTGGGGGGAGGGATATCGTCGTA
GTACCCGGGATCGAAAGCGCCGGATTCACGACGATGAAGACGGAGGGCAG
GTGGAAGAGGCTGGAGGCTTTGGAGGACAGGCACGTGAAGGGGACGCCGG
TCTACTGGGGGGTCCAAGGGGACCTGGTACGAGTGGGGGAGAGGGCCAGT
CAAAGCGCCCGCGCCGGGAAAGTCGACGAGGCCGCCGGTACGGGGACGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGATGAGGAGGAGGAGGAGGA
GGAGGATGAGAAGGAGAAATATCCGATTGGTCACCCGCCGGCCCGCACGT
ATCCCCGGAGCGAGCGGCTGGCAACAAGCCAAGCCATGGCTGCCTCCTTG
CGCGAGACACGGGCGGGCGCGACGGCCAGCCCTGATCTCCGGCGTAGCAG
CCGTCGTGGGCTTGCCCCTTCCTCTTCGTCGGCCGCCACCTCCCTCTTCG
GTTCGGAGCAGCGAGGGCAGCCCTTAAGGTATGTCGTCAGCTCCCACGGC
CCTGGCGACGAGCACACCTTACGGGTGCGTCTCAGGCCCGTCACAGAGGA
CTTGGCGGCCGATCGGGAGGAGAAGGGGGGTGGGACTGGTGGGGGAGACG
ACAGGCCCGAGGGGGGACGGAACAGGGGAGGTCTTATGCTGCGACGAGTG
CGCTCGAGGTTAAGGGATGACGGCGAGGGCAATGGGCCGGCCTCATTGGC
CCCCGCGGCGGACAGGGGAGGCACAGGGAGGGAAGGCTATGTGGAGCCTC
CTCTCGAGCGGTTGCAGGCTGTTATTGGAAGACTGCTCGATGAAGTGGCG
GCAGCCGACGATTACCAGATCCTGCCATCCATTTCCGTAGGCAGGGACGG
GGAAAATATGAACGGAGGCGGTCCTCGAAGGAGTGGGAGGACAGGGGGCT
CGGGAAATGGCGCTGTGACGTGGACAGGTATTCTTGCGCGCAATGAACGC
CCAGGGGGGTATGACTCAGTGGAGGAGGTGGAAACAGAGGTACGACTGCT
ACTGCAGGGACTGGTCCGTAGTCATGAAACCATCTATGTGGCGGAAGGAC
GGCGTATACTCAATGATTTGCCACGGATGATGAGGGAAGCTCTAGATGAG
GCGTAG

protein sequence of rna5714

>rna5714-protein ID=rna5714-protein|Name=rna5714|organism=Nannochloropsis gaditana|type=polypeptide|length=581bp
MPGLSLPLKLKRRLNIHSLYLNMHHIILHGSYSYTGRAVAKLLTLHFRLA
SCAMDPAISAASSANVSWNDTAIITRPIASSDWTTEEHARFLEGLKQYGR
SWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPPRTASTKGKDGASAA
RAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFT
KLDQLRTCGYEGSYTMDGTRHLTKTFLKKAQCEGRLESGSWRSRFKLKNP
RGVAKRHANRRKKVLARIRGSSGRSPYGHRHWRYGDHVGEEGEEEGDDVE
EDEESGSERLEGGHDATSVCGTLSTYTTRSGRVVTFSRPSQHVQDTNSEA
EENEERSHTADGIYVGEMPTYTHDESALLVESGMTIDTGVHTGRLGMAIV
RDDDVKEHHAPKEGYEELSRDVSGVSASIPTPRTMVDVLSAFTMDPEGFP
QWEYSGRREQGASLHPWTENDTVSARSGSDVFESSTKCVPQGYAALTSSV
SSAATSAASNFSDSSCADGLKTQRDDMVMMMCSADDSLFWESESYNEEQD
DDNSLTRPPVSPNADAANEEWISTFEQVPFM

mRNA from alignment at CM002466.1:653961..656179+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5714 ID=rna5714|Name=rna5714|organism=Nannochloropsis gaditana|type=mRNA|length=2219bp|location=Sequence derived from alignment at CM002466.1:653961..656179+ (Nannochloropsis gaditana)
ATGCCAGGTCTAAGTCTTCCTCTTAAGCTGAAACGTCGTCTTAATATTCA
TTCACTCTATTTGAACATGCATCACATAATACTTCATGGCTCTTATTCCT
ACACAGGCCGGGCAGTCGCCAAATTGCTTACGCTTCACTTCCGTCTGGCA
AGTTGTGCCATGGACCCTGCTATCTCCGCCGCGTCTAGTGCTAACGTCAG
TTGGAATGACACTGCGATCATTACAAGACCGATCGCCTCTTCTGATTGGA
CCACAGAGGAGCACGCGAGATTTTTGGAAGGTCTCAAGCAGTATGGAAGG
TCTTGGGAATCTATTTCAACCCTGCTTCTCCCAACCCGCACTCCAGAAGA
GATTAAAAACTACGCCTCGTTATATCTCGTGAATCAGCCCAAAGACTTGA
CCCCTCCCCGGACGGCGTCGAcaaaaggaaaggatggagcgAGTGCTGCC
CGAGCCAAGGAAGGTCATTGGACGGACGAGGAGCACGAGTTCTTCCTGAA
ATGCTGGGCGAAGTACGGCAAATCGTGGAAAAAGATCTCCCAGGTCATGA
AGACGCGCAGCAATGAACAGATTCGAACCCATGCTCAAAAGTACTTTACC
AAACTGGATCAACTTCGGACGTGTGGGTACGAGGGCTCCTACACCATGGA
CGGTACGCGGCATTTGACCAAGACATTTTTAAAGAAGGCGCAATGTGAAG
GCCGGCTAGAGTCAGGTTCCTGGAGGTCGCGCTTCAAGCTAAAGAACCCT
AGAGGAGTCGCCAAAAGGCACGCTAACCGCAGGAAAAAGGTCCTCGCACG
AATTCGAGGGAGCAGCGGACGATCTCCATATGGCCATCGCCATTGGCGTT
ACGGGGATCAtgtcggagaggagggagaggaagaaggcgatgacgttgag
gaggatgaggagagTGGATCAGAGAGACTCGAGGGCGGACATGATGCAAC
GTCTGTGTGTGGCACTTTGTCCACCTACACCACTCGTAGCGGGCGCGTTG
TCACGTTCAGCCGACCCTCCCAGCATGTACAAGACACCAATagcgaggca
gaggagaacGAAGAAAGATCCCATACTGCTGATGGGATATATGTAGGGGA
GATGCCCACTTATACGCACGATGAAAGTGCCTTGTTGGTGGAATCAGGAA
TGACAATTGACACCGGCGTCCACACGGGAAGGCTGGGGATGGCGATTGTC
CGAGACGATGATGTGAAAGAGCATCATGCGCCCAAGGAGGGATATGAGGA
GCTTTCTCGCGACGTCTCTGGCGTTTCGGCGTCTATTCCGACCCCGCGGA
CTATGGTAGATGTTTTGAGCGCTTTTACGATGGATCCGGAGGGCTTCCCT
CAATGGGAGTATAGCGGGCGTCGGGAACAAGGCGCGTCATTGCATCCCTG
GACAGAGAATGACACAGTGTCAGCTCGATCTGGCTCAGATGTCTTCGAAT
CCTCGACAAAATGTGTTCCTCAGGGATATGCTGCTCTCACGTCCTCCGTA
AGCAGTGCTGCTACCAGTGCTGCCAGCAACTTTTCAGACAGCAGCTGTGC
TGATGGCTTGAAAACGCAGAGAGACGACATGGTTATGATGATGTGTAGCG
CCGATGACAGCCTCTTCTGGGAATCCGAGAGCTACAACGAGGAACAGGAT
GACGACAATAGCCTCACTCGGCCCCCTGTTTCACCTAACGCAGATGCGGC
GAACGAGGAGTGGATATCCACGTTCGAGCAAGTCCCCTTCATGTGAACCA
AGCTGGGAAGGACGATATGCAATTAAAAAACTCAAGGTGGTGGGCAGGCA
GAACTTGAATTAGAGACCACCTTATTGAAAAAGGATACGTGGCTTAATCA
GCGTTTGCGCCGCATGTGATACAGATGCTGGGTTGGGTTATGCATTATTA
CATTTTTTTTCGATATAGGAGTCTAATAGTTGCAGGCCTGTGACGGAAAA
GAGATCCTCCCTGAGTGTTGGTCTTACGCATCTTTTCTGTGCACTCGCAT
GTAAGACAACATGTATCAAAGGCAGGCATACAGCATACAATAGATAGGGA
TGTATACTAAAACCGTGTGGATACTAGATAATAGACAAATTTTAGATATA
CAGGAAGGTATACAAGCAGGCTTTCGCCTATCGAGCGTATGCCTGAAGTA
CATGCATCGATTTGTAAATGAAGCGCTCGTCCCCTAATCTGGCAAAAGAT
TTCTAACGCAAATTAAAAA

Coding sequence (CDS) from alignment at CM002466.1:653961..656179+

>rna5714 ID=rna5714|Name=rna5714|organism=Nannochloropsis gaditana|type=CDS|length=1746bp|location=Sequence derived from alignment at CM002466.1:653961..656179+ (Nannochloropsis gaditana)
ATGCCAGGTCTAAGTCTTCCTCTTAAGCTGAAACGTCGTCTTAATATTCA
TTCACTCTATTTGAACATGCATCACATAATACTTCATGGCTCTTATTCCT
ACACAGGCCGGGCAGTCGCCAAATTGCTTACGCTTCACTTCCGTCTGGCA
AGTTGTGCCATGGACCCTGCTATCTCCGCCGCGTCTAGTGCTAACGTCAG
TTGGAATGACACTGCGATCATTACAAGACCGATCGCCTCTTCTGATTGGA
CCACAGAGGAGCACGCGAGATTTTTGGAAGGTCTCAAGCAGTATGGAAGG
TCTTGGGAATCTATTTCAACCCTGCTTCTCCCAACCCGCACTCCAGAAGA
GATTAAAAACTACGCCTCGTTATATCTCGTGAATCAGCCCAAAGACTTGA
CCCCTCCCCGGACGGCGTCGAcaaaaggaaaggatggagcgAGTGCTGCC
CGAGCCAAGGAAGGTCATTGGACGGACGAGGAGCACGAGTTCTTCCTGAA
ATGCTGGGCGAAGTACGGCAAATCGTGGAAAAAGATCTCCCAGGTCATGA
AGACGCGCAGCAATGAACAGATTCGAACCCATGCTCAAAAGTACTTTACC
AAACTGGATCAACTTCGGACGTGTGGGTACGAGGGCTCCTACACCATGGA
CGGTACGCGGCATTTGACCAAGACATTTTTAAAGAAGGCGCAATGTGAAG
GCCGGCTAGAGTCAGGTTCCTGGAGGTCGCGCTTCAAGCTAAAGAACCCT
AGAGGAGTCGCCAAAAGGCACGCTAACCGCAGGAAAAAGGTCCTCGCACG
AATTCGAGGGAGCAGCGGACGATCTCCATATGGCCATCGCCATTGGCGTT
ACGGGGATCAtgtcggagaggagggagaggaagaaggcgatgacgttgag
gaggatgaggagagTGGATCAGAGAGACTCGAGGGCGGACATGATGCAAC
GTCTGTGTGTGGCACTTTGTCCACCTACACCACTCGTAGCGGGCGCGTTG
TCACGTTCAGCCGACCCTCCCAGCATGTACAAGACACCAATagcgaggca
gaggagaacGAAGAAAGATCCCATACTGCTGATGGGATATATGTAGGGGA
GATGCCCACTTATACGCACGATGAAAGTGCCTTGTTGGTGGAATCAGGAA
TGACAATTGACACCGGCGTCCACACGGGAAGGCTGGGGATGGCGATTGTC
CGAGACGATGATGTGAAAGAGCATCATGCGCCCAAGGAGGGATATGAGGA
GCTTTCTCGCGACGTCTCTGGCGTTTCGGCGTCTATTCCGACCCCGCGGA
CTATGGTAGATGTTTTGAGCGCTTTTACGATGGATCCGGAGGGCTTCCCT
CAATGGGAGTATAGCGGGCGTCGGGAACAAGGCGCGTCATTGCATCCCTG
GACAGAGAATGACACAGTGTCAGCTCGATCTGGCTCAGATGTCTTCGAAT
CCTCGACAAAATGTGTTCCTCAGGGATATGCTGCTCTCACGTCCTCCGTA
AGCAGTGCTGCTACCAGTGCTGCCAGCAACTTTTCAGACAGCAGCTGTGC
TGATGGCTTGAAAACGCAGAGAGACGACATGGTTATGATGATGTGTAGCG
CCGATGACAGCCTCTTCTGGGAATCCGAGAGCTACAACGAGGAACAGGAT
GACGACAATAGCCTCACTCGGCCCCCTGTTTCACCTAACGCAGATGCGGC
GAACGAGGAGTGGATATCCACGTTCGAGCAAGTCCCCTTCATGTGA

Synonyms

Publications