rna5712, rna5712 (mRNA) Nannochloropsis gaditana

Overview
Namerna5712
Unique Namerna5712
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1664
Alignment locationCM002466.1:644579..645591 -

Link to JBrowse

Properties
Property NameValue
Productmacrophage migration inhibitory factor
Orig transcript idgnl|cribi|Naga_100122g2.3578.mrna
Orig protein idgnl|cribi|Naga_100122g2.3578
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:644579..645591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100122g2gene5517Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5712rna5712-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24991.1cds5697Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5712 ID=rna5712|Name=rna5712|organism=Nannochloropsis gaditana|type=mRNA|length=1664bp
CTTGGCCATGGGACGGAAGGAGAAGGTGTGCTGGGAGGCCGTAGGGCGCA
CCGTCCGGGAGAAAGTTCGAAGTCCTTCGTCCTCATCATCTTGTTTGGAG
CGCTTTGTTGGCAGCAGTGTCGCATGCACACTTGCGCTTGCAATGCGGTT
GTGGTACGGAAGGACGCCATTTAACCGGTACTCGCCCTGGTTTGAGGATA
TAGCCATTCGCCTTTCATCACACCATCGCATTCGCATATTTCTCAGAACA
GGTCGTGCCTGTTATGATACTCCGAAATTTTGCGCTATTAAATTCTAGGG
CCGGCACGATTTCGTCCCGAGCCGTAATTTGTCAGGCCCGGAACCTCGCA
GCTGCAGGGCGGGGTGCTGGCAAAGGTGGTTCTGGTAGAGACGGGGAATA
TGGCGGAGACAGCGACGCCACGGCAACATCAGATGCTGCCGCAGCAGCTA
TCAAAGAGAAAGATCCTTTTGGTTTTAGGGAACTGAAAGCTAAGTGGAAG
AACTCGGAAATCGGCGGACATGGGTCCCCTGATATGCGCGAGGAGGATGC
GGAGGCCATCGAGACGGAGATGGAGAAGACTGGTCGCGTCACAGTGCCAA
GAAACATCTTTGGAATCAAGCATATTAGCAAAGAAATGACGGAGGCATGG
GAAGAGGGCCTCCTGCCCCCACAACTCTATCCGCGTGCCGCTGGGTTGTA
AGTATGATCCTTTAAACCAGAACCATCATGTGTCCCGCCCTTCTCGCCTT
AAAGGCTCCTACTGAAGTGATGTGGACTTTTAAATTTTGTTACATCCAAA
CAGCATGTCTCTGGCATCATAACTCGTGGGCGCAACCCTGGCTCTCTTAC
ATTGCTGCTGGTCCCGCTCTCGGTCCACTCACTGTCCTGGCTCCTCCCCG
CTTTTTTTCCTCCAACCACAGAGAGGGTCCTCCAGACTTCTACTGGCCAA
GCAATCTGGAGACGACGCTCCCAGATGAGAGCGATCGCCTGTATCCTGCC
GGCGGAGAACGCGTCTTTTCCCCGGAGGAAGTGAGGGCTATGAATGAGGC
AGAGGTCGGGGGTGTTTGTCGTGGGAAGCTGCAACGGCGGGGAAACCAGC
CATTGCTATGCAAGAAAATCGACCTGGGAGAGCTGGAGTTCAGCAACGTG
GCCGTTCTCGCCCAGTTCGTTTCGCCCCTGGGGATGATCAAGCCGCGGCG
CATGTCAGGATTGTGTGCGAAATGCCAACGAAAGGTGGCGCGCACGATAA
AGCAGGCCCGGCATCTGGGGGTGTTGCCTCACACATACGGTGTGGATTTG
TATCAACGGCTGAAGATGAAGGGAGAGGGGGTGGGGCCCGACGGGAAGAA
ACCCTTTTTGTGGAGGAAGGGGGACGCTGTAGAGGAGAAGGAAAAGAAGA
GGGAAGAGCTCTTGAAGCAGACACCAAGTCTGACCATATAGATCAAGTGT
AGGGAAGTAGTCAAAGAGAGATGTGATGGGTTGGTAGCAGTGGTAAAGTG
GAAATGAACAACAAAGAAAAAGTGTGCGCATGACATCTTGGGATGCTAAT
TCAGGGCTGAAATTATTCGACTGCTATTGCCCGACAGAGTCGCACCGATG
AGTTTGACACTCAGTTTGTACACCACTCATCGATTAGAGAGTCGGCCCGT
GACTTTTGACTCCT
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protein sequence of rna5712

>rna5712-protein ID=rna5712-protein|Name=rna5712|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MCHAAGPDLKPLNAITIKPRFIARQNSQLHIWLLAMRFVGGGVLLLPLVA
FLIAQMHQVNAFMAYRPISLTTYVDSTPHARSFARTSVVVKPTLIVHHTG
GELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSMSFAGQPGNAAF
LYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAW
QGNTDRALQNRHKKRQNDVMVEYFIATEFFFLKLAVA
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mRNA from alignment at CM002466.1:644579..645591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5712 ID=rna5712|Name=rna5712|organism=Nannochloropsis gaditana|type=mRNA|length=1013bp|location=Sequence derived from alignment at CM002466.1:644579..645591- (Nannochloropsis gaditana)
ATGTGCCACGCCGCCGGGCCCGACCTCAAACCATTGAATGCAATCACAAT
AAAGCCACGGTTCATTGCCGTACGTTCAATGCATGCTTATATACACCGGA
TATAGCGAGCGAGAGCGCTTAGTATCCCACCGCGTACCCCCCAAGGCATA
AGGAAAGGATTAGGGTTCCCCGGTAACTGCATCCTCAAGTTGAAGCTGAG
ACTTGTTCCAACGACGGCCTTTCCCACCTATGCTTTCTCCATCCGCTGGT
CACTAGCTATCTTCTAACGTGTCCATTAACTCTCTTTTCCGTTCATATTT
TGCTTCCAGCGGCAAAATTCTCAGCTTCACATTTGGTTACTGGCCATGCG
CTTCGTAGGAGGAGGGGTGCTTCTGTTACCCCTCGTAGCTTTCTTGATCG
CGCAAATGCACCAAGTTAATGCGTTCATGGCATATCGTCCGATCTCTCTC
ACTACATATGTGGATAGCACTCCGCACGCTCGTTCTTTTGCCCGCACGAG
CGTCGTGGTCAAGCCAACTTTGATCGTCCACCACACGGGGGGGGAGCTGC
CCGCGGATGAAAAGGCGGCGTTTTTGGCAGAGGCCTCGAAGACCGTAAGT
GTAACGCTAGGCAAAGCAGAGAGCTATGTCATGGTATCGGTGTGCCCAAG
CTCGATGTCTTTTGCCGGTCAGCCTGGCAACGCTGCATTTCTCTACCTTG
CCAGCATTGGGCATATTGGACCAGAGACCAATAAACCAGCCGCTAAAGAG
CTTACCGCTTTGGTAGAGAAGCACATGGGCATTCCTGCCAACAGAGTCTT
CATTCAATTTTCTGACGCAGCGGCTGCAAACTTTGCATGGCAGGGAAACA
CGTTTGGATAGAAAAAAGTGTTGGGGGGAAGAACATGCGAGGCAGACTGG
TGAGATGAAGGGATAGGGCTTTACAAAATAGACACAAAAAGCGTCAAAAT
GACGTCATGGTCGAGTATTTCATTGCAACTGAGTTTTTTTTTCTCAAGCT
AGCTGTCGCGTGA
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Coding sequence (CDS) from alignment at CM002466.1:644579..645591-

>rna5712 ID=rna5712|Name=rna5712|organism=Nannochloropsis gaditana|type=CDS|length=2142bp|location=Sequence derived from alignment at CM002466.1:644579..645591- (Nannochloropsis gaditana)
GGATAGGGCTTTACAAAATAGACACAAAAAGCGTCAAAATGACGTCATGG
TCGAGTATTTCATTGCAACTGAGTTTTTTTTTCTCAAGCTAGCTGTCGCG
TGACGGCAAAATTCTCAGCTTCACATTTGGTTACTGGCCATGCGCTTCGT
AGGAGGAGGGGTGCTTCTGTTACCCCTCGTAGCTTTCTTGATCGCGCAAA
TGCACCAAGTTAATGCGTTCATGGCATATCGTCCGATCTCTCTCACTACA
TATGTGGATAGCACTCCGCACGCTCGTTCTTTTGCCCGCACGAGCGTCGT
GGTCAAGCCAACTTTGATCGTCCACCACACGGGGGGGGAGCTGCCCGCGG
ATGAAAAGGCGGCGTTTTTGGCAGAGGCCTCGAAGACCGTAAGTGTAACG
CTAGGCAAAGCAGAGAGCTATGTCATGGTATCGGTGTGCCCAAGCTCGAT
GTCTTTTGCCGGTCAGCCTGGCAACGCTGCATTTCTCTACCTTGCCAGCA
TTGGGCATATTGGACCAGAGACCAATAAACCAGCCGCTAAAGAGCTTACC
GCTTTGGTAGAGAAGCACATGGGCATTCCTGCCAACAGAGTCTTCATTCA
ATTTTCTGACGCAGCGGCTGCAAACTTTGCATGGCAGGGAAACACATGTG
CCACGCCGCCGGGCCCGACCTCAAACCATTGAATGCAATCACAATAAAGC
CACGGTTCATTGCCGGATAGGGCTTTACAAAATAGACACAAAAAGCGTCA
AAATGACGTCATGGTCGAGTATTTCATTGCAACTGAGTTTTTTTTTCTCA
AGCTAGCTGTCGCGTGACGGCAAAATTCTCAGCTTCACATTTGGTTACTG
GCCATGCGCTTCGTAGGAGGAGGGGTGCTTCTGTTACCCCTCGTAGCTTT
CTTGATCGCGCAAATGCACCAAGTTAATGCGTTCATGGCATATCGTCCGA
TCTCTCTCACTACATATGTGGATAGCACTCCGCACGCTCGTTCTTTTGCC
CGCACGAGCGTCGTGGTCAAGCCAACTTTGATCGTCCACCACACGGGGGG
GGAGCTGCCCGCGGATGAAAAGGCGGCGTTTTTGGCAGAGGCCTCGAAGA
CCGTAAGTGTAACGCTAGGCAAAGCAGAGAGCTATGTCATGGTATCGGTG
TGCCCAAGCTCGATGTCTTTTGCCGGTCAGCCTGGCAACGCTGCATTTCT
CTACCTTGCCAGCATTGGGCATATTGGACCAGAGACCAATAAACCAGCCG
CTAAAGAGCTTACCGCTTTGGTAGAGAAGCACATGGGCATTCCTGCCAAC
AGAGTCTTCATTCAATTTTCTGACGCAGCGGCTGCAAACTTTGCATGGCA
GGGAAACACATGTGCCACGCCGCCGGGCCCGACCTCAAACCATTGAATGC
AATCACAATAAAGCCACGGTTCATTGCCGGATAGGGCTTTACAAAATAGA
CACAAAAAGCGTCAAAATGACGTCATGGTCGAGTATTTCATTGCAACTGA
GTTTTTTTTTCTCAAGCTAGCTGTCGCGTGACGGCAAAATTCTCAGCTTC
ACATTTGGTTACTGGCCATGCGCTTCGTAGGAGGAGGGGTGCTTCTGTTA
CCCCTCGTAGCTTTCTTGATCGCGCAAATGCACCAAGTTAATGCGTTCAT
GGCATATCGTCCGATCTCTCTCACTACATATGTGGATAGCACTCCGCACG
CTCGTTCTTTTGCCCGCACGAGCGTCGTGGTCAAGCCAACTTTGATCGTC
CACCACACGGGGGGGGAGCTGCCCGCGGATGAAAAGGCGGCGTTTTTGGC
AGAGGCCTCGAAGACCGTAAGTGTAACGCTAGGCAAAGCAGAGAGCTATG
TCATGGTATCGGTGTGCCCAAGCTCGATGTCTTTTGCCGGTCAGCCTGGC
AACGCTGCATTTCTCTACCTTGCCAGCATTGGGCATATTGGACCAGAGAC
CAATAAACCAGCCGCTAAAGAGCTTACCGCTTTGGTAGAGAAGCACATGG
GCATTCCTGCCAACAGAGTCTTCATTCAATTTTCTGACGCAGCGGCTGCA
AACTTTGCATGGCAGGGAAACACATGTGCCACGCCGCCGGGCCCGACCTC
AAACCATTGAATGCAATCACAATAAAGCCACGGTTCATTGCC
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Synonyms
Publications