EWM24991.1, cds5697 (CDS) Nannochloropsis gaditana

Overview
NameEWM24991.1
Unique Namecds5697
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:645523..645591 -
Alignment locationCM002466.1:644741..645282 -
Alignment locationCM002466.1:644579..644681 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24991.1
Productmacrophage migration inhibitory factor
Orig transcript idgnl|cribi|Naga_100122g2.3578.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:645523..645591 -
CM002466.1supercontigCM002466.1:644741..645282 -
CM002466.1supercontigCM002466.1:644579..644681 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR014347Tautomerase/MIF_sf
IPR001398Macrophage_inhib_fac
Homology
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|585106624|gb|EWM24991.1| (macrophage migration inhibitory factor [Nannochloropsis gaditana])

HSP 1 Score: 490.345 bits (1261), Expect = 1.779e-175
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MCHAAGPDLKPLNAITIKPRFIARQNSQLHIWLLAMRFVGGGVLLLPLVAFLIAQMHQVNAFMAYRPISLTTYVDSTPHARSFARTSVVVKPTLIVHHTGGELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNTDRALQNRHKKRQNDVMVEYFIATEFFFLKLAVA 237
            MCHAAGPDLKPLNAITIKPRFIARQNSQLHIWLLAMRFVGGGVLLLPLVAFLIAQMHQVNAFMAYRPISLTTYVDSTPHARSFARTSVVVKPTLIVHHTGGELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNTDRALQNRHKKRQNDVMVEYFIATEFFFLKLAVA
Sbjct:    1 MCHAAGPDLKPLNAITIKPRFIARQNSQLHIWLLAMRFVGGGVLLLPLVAFLIAQMHQVNAFMAYRPISLTTYVDSTPHARSFARTSVVVKPTLIVHHTGGELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNTDRALQNRHKKRQNDVMVEYFIATEFFFLKLAVA 237          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|553179226|ref|XP_005852670.1| (phenylpyruvate tautomerase, partial [Nannochloropsis gaditana CCMP526] >gi|422295863|gb|EKU23162.1| phenylpyruvate tautomerase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 364.77 bits (935), Expect = 1.450e-126
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 0
Query:   24 RQNSQLHIWLLAMRFVGGGVLLLPLVAFLIAQMHQVNAFMAYRPISLTTYVDSTPHARSFARTSVVVKPTLIVHHTGGELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 204
            RQNSQLHIWLLAMRF GGGVLLLPLVAFLIAQMHQVNAFMAYRPISLTT+VDSTP+ARSFARTSVVVKPTLIVHHTGGELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT
Sbjct:    2 RQNSQLHIWLLAMRFGGGGVLLLPLVAFLIAQMHQVNAFMAYRPISLTTHVDSTPYARSFARTSVVVKPTLIVHHTGGELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 182          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|873225295|emb|CEM24109.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 112.849 bits (281), Expect = 2.382e-28
Identity = 55/113 (48.67%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   92 PTLIVHHTGGELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 204
            P+LIV  T  +L    + AFL EAS  V+  LGK ESY++VS   S+M F G  G  AF+YLASIG IGP+TN   +  ++ LVEKH+G+P++R +IQF D+  +NF ++G T
Sbjct:    3 PSLIVTSTA-DLDKAAEDAFLTEASSAVASGLGKPESYMLVSYTRSNMRFGGSEGPVAFVYLASIGKIGPDTNPKVSATISGLVEKHLGVPSDRCYIQFVDSPGSNFGYRGGT 114          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|567873809|ref|XP_006429494.1| (hypothetical protein CICLE_v10013125mg [Citrus clementina] >gi|568855034|ref|XP_006481117.1| PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Citrus sinensis] >gi|557531551|gb|ESR42734.1| hypothetical protein CICLE_v10013125mg [Citrus clementina])

HSP 1 Score: 81.6481 bits (200), Expect = 2.598e-16
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 0
Query:  102 ELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPS-SMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 204
            +L   + ++ L+EA+ TV+  +GK E+YVM+ +  S  MSF G    AA+  L SIG + P+ NK  +  ++A++EK + +P +R FI+F D   +NF W G+T
Sbjct:   11 KLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGST 114          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|552821653|ref|XP_005845907.1| (hypothetical protein CHLNCDRAFT_136510 [Chlorella variabilis] >gi|307105556|gb|EFN53805.1| hypothetical protein CHLNCDRAFT_136510 [Chlorella variabilis])

HSP 1 Score: 81.6481 bits (200), Expect = 2.654e-16
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 0
Query:  103 LPADEKAA--FLAEASKTVSVTLGKAESYVMVSV-CPSSMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 204
            +P D  +A   +A+ SK V+   GK E YVMVS+     M F G     AF  L SIG IG E NK  +  L  +V++H+G+PA+R++I+F D A ++F W G T
Sbjct:   10 VPGDRVSASQIVADLSKAVAQATGKPEGYVMVSLETGKQMMFGGTEEPCAFGELISIGSIGGEKNKKISAALAEVVQRHLGVPASRMYIKFYDVARSDFGWNGTT 114          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|1101344891|ref|XP_018898183.1| (PREDICTED: macrophage migration inhibitory factor homolog [Bemisia tabaci])

HSP 1 Score: 80.8777 bits (198), Expect = 5.613e-16
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0
Query:  102 ELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPSSM-SFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 204
            ++PAD    FL   +  V+ TLGK ESYV+V V P  M SF G    AA   L SIG +G E NK  +K L+A +EK +G+  NR++IQFSD  + +  + G+T
Sbjct:   14 KVPAD----FLKTTTALVAKTLGKPESYVIVQVVPDQMLSFGGSTEAAANCLLMSIGKLGLEENKKHSKVLSAHLEKTLGVSPNRMYIQFSDLPSKDVGYDGST 113          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|302766481|ref|XP_002966661.1| (hypothetical protein SELMODRAFT_144009 [Selaginella moellendorffii] >gi|302792623|ref|XP_002978077.1| hypothetical protein SELMODRAFT_271294 [Selaginella moellendorffii] >gi|300154098|gb|EFJ20734.1| hypothetical protein SELMODRAFT_271294 [Selaginella moellendorffii] >gi|300166081|gb|EFJ32688.1| hypothetical protein SELMODRAFT_144009 [Selaginella moellendorffii])

HSP 1 Score: 80.1073 bits (196), Expect = 1.091e-15
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 0
Query:   92 PTLIVHHTGGELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPS-SMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 204
            PTL +  T   L     +  L +AS+TV+  LGK ESYVM+ +  +  +SF G    AA+  L SIG I P++NK  +K +  L++  + +P NR +I+F D   +NF W G+T
Sbjct:    2 PTLNIS-TNVPLDGVSTSDILKDASRTVARVLGKPESYVMIIINGAVPISFGGSEEPAAYGELVSIGAISPDSNKKLSKAIAELLQSKLAVPPNRFYIKFYDVKGSNFGWNGST 114          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|743782032|ref|XP_010921043.1| (PREDICTED: macrophage migration inhibitory factor homolog [Elaeis guineensis])

HSP 1 Score: 79.7221 bits (195), Expect = 1.333e-15
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 0
Query:  107 EKAAFLAEASKTVSVTLGKAESYVMVSVCPS-SMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 204
            + +A L+EA+KTV+  +GK E+YVM+ +  S  MSF G    AA+  L SIG + P+ NK  +  + +++E  + +P +R FI+F D   +NF W G+T
Sbjct:   16 DTSAILSEATKTVAKLIGKPEAYVMIVLKGSVPMSFGGTEQPAAYGELVSIGGLNPDVNKKLSGAIASILETKLSVPKSRFFIKFYDTKGSNFGWNGST 114          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|720027283|ref|XP_010264526.1| (PREDICTED: macrophage migration inhibitory factor homolog isoform X2 [Nelumbo nucifera])

HSP 1 Score: 78.9518 bits (193), Expect = 2.818e-15
Identity = 39/103 (37.86%), Postives = 62/103 (60.19%), Query Frame = 0
Query:  103 LPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPS-SMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNT 204
            L   + ++ L+EA+KTV+  +GK E+YVM+ +  S  MSF G    AA+  L SIG + PE NK  +  +  ++E  + +P +R F++F D   +NF W G+T
Sbjct:   12 LDGVDTSSILSEATKTVAKIIGKPEAYVMIVLKGSVPMSFGGNEQPAAYGELVSIGGLNPEVNKKLSGAIATILETKLSVPKSRFFLKFYDTKGSNFGWNGST 114          
BLAST of EWM24991.1 vs. NCBI_GenBank
Match: gi|914614999|ref|NP_001299021.1| (uncharacterized protein LOC106117964 [Papilio xuthus] >gi|389609061|dbj|BAM18142.1| unknown unsecreted protein [Papilio xuthus] >gi|930656569|gb|KPI98893.1| Macrophage migration inhibitory factor [Papilio xuthus])

HSP 1 Score: 78.5666 bits (192), Expect = 5.020e-15
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 0
Query:  101 GELPADEKAAFLAEASKTVSVTLGKAESYVMVSVCPS-SMSFAGQPGNAAFLYLASIGHIGPETNKPAAKELTALVEKHMGIPANRVFIQFSDAAAANFAWQGNTDRAL 208
            G++P D    FL +A   ++  LGK E Y +VS+ P   MSF G     A   L SIG +G E NK  AK L  LVEK +G+P +R++I F D    N  ++G T  +L
Sbjct:   13 GKIPQD----FLTKAVPVLARALGKPEQYCVVSIIPDVPMSFGGSTDPCAIANLMSIGSLGVEQNKKHAKVLFELVEKELGVPQDRMYITFQDEPTGNVGFKGTTFHSL 117          
The following BLAST results are available for this feature:
BLAST of EWM24991.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106624|gb|EWM24991.1|1.779e-175100.00macrophage migration inhibitory factor [Nannochlor... [more]
gi|553179226|ref|XP_005852670.1|1.450e-12698.34phenylpyruvate tautomerase, partial [Nannochlorops... [more]
gi|873225295|emb|CEM24109.1|2.382e-2848.67unnamed protein product [Vitrella brassicaformis C... [more]
gi|567873809|ref|XP_006429494.1|2.598e-1638.46hypothetical protein CICLE_v10013125mg [Citrus cle... [more]
gi|552821653|ref|XP_005845907.1|2.654e-1641.90hypothetical protein CHLNCDRAFT_136510 [Chlorella ... [more]
gi|1101344891|ref|XP_018898183.1|5.613e-1644.23PREDICTED: macrophage migration inhibitory factor ... [more]
gi|302766481|ref|XP_002966661.1|1.091e-1538.60hypothetical protein SELMODRAFT_144009 [Selaginell... [more]
gi|743782032|ref|XP_010921043.1|1.333e-1539.39PREDICTED: macrophage migration inhibitory factor ... [more]
gi|720027283|ref|XP_010264526.1|2.818e-1537.86PREDICTED: macrophage migration inhibitory factor ... [more]
gi|914614999|ref|NP_001299021.1|5.020e-1540.37uncharacterized protein LOC106117964 [Papilio xuth... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5712rna5712Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications