EWM24979.1, cds5683 (CDS) Nannochloropsis gaditana

Overview
NameEWM24979.1
Unique Namecds5683
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:611538..611975 +
Alignment locationCM002466.1:612103..612162 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24979.1
Producteukaryotic translation initiation factor iso4e
Orig transcript idgnl|cribi|Naga_100122g15.3566.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:611538..611975 +
CM002466.1supercontigCM002466.1:612103..612162 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR001040TIF_eIF_4E
IPR023398TIF_eIF4e-like_dom
Homology
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|585106612|gb|EWM24979.1| (eukaryotic translation initiation factor iso4e [Nannochloropsis gaditana])

HSP 1 Score: 335.88 bits (860), Expect = 1.112e-116
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 165
            MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV
Sbjct:    1 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 165          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|585106611|gb|EWM24978.1| (eukaryotic translation initiation factor iso4e [Nannochloropsis gaditana])

HSP 1 Score: 336.265 bits (861), Expect = 3.453e-115
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 165
            MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV
Sbjct:  113 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|675173023|ref|XP_008895396.1| (hypothetical protein PPTG_04839 [Phytophthora parasitica INRA-310] >gi|566015505|gb|ETI38416.1| hypothetical protein F443_15818 [Phytophthora parasitica P1569] >gi|567952955|gb|ETK78618.1| hypothetical protein L915_15374 [Phytophthora parasitica] >gi|567981612|gb|ETL32049.1| hypothetical protein L916_15268 [Phytophthora parasitica] >gi|568011119|gb|ETL85297.1| hypothetical protein L917_15090 [Phytophthora parasitica] >gi|568104918|gb|ETN19563.1| hypothetical protein PPTG_04839 [Phytophthora parasitica INRA-310] >gi|570319241|gb|ETO67189.1| hypothetical protein F444_15798 [Phytophthora parasitica P1976] >gi|570943043|gb|ETP08300.1| hypothetical protein F441_15651 [Phytophthora parasitica CJ01A1] >gi|570973828|gb|ETP36353.1| hypothetical protein F442_15659 [Phytophthora parasitica P10297])

HSP 1 Score: 157.147 bits (396), Expect = 3.188e-45
Identity = 70/157 (44.59%), Postives = 111/157 (70.70%), Query Frame = 0
Query:    3 SWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 156
            SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   60 SWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 216          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|301118596|ref|XP_002907026.1| (eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4] >gi|262108375|gb|EEY66427.1| eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4])

HSP 1 Score: 157.147 bits (396), Expect = 4.496e-45
Identity = 70/157 (44.59%), Postives = 110/157 (70.06%), Query Frame = 0
Query:    3 SWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 156
            SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA  ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   57 SWEENLKNVYTFNTVEDFWCLYNNILAPTKLSIGSNYHLFKEGIRPMWEDPINAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATANAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 213          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|568041025|gb|ETM38449.1| (hypothetical protein L914_15227 [Phytophthora parasitica])

HSP 1 Score: 156.377 bits (394), Expect = 4.613e-45
Identity = 70/157 (44.59%), Postives = 111/157 (70.70%), Query Frame = 0
Query:    3 SWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 156
            SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   60 SWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNEMLKYQSHADAAASGSSFQN 216          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|970630899|gb|KUF77704.1| (Eukaryotic translation initiation factor 4E [Phytophthora nicotianae])

HSP 1 Score: 157.147 bits (396), Expect = 5.154e-45
Identity = 70/157 (44.59%), Postives = 111/157 (70.70%), Query Frame = 0
Query:    3 SWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 156
            SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   60 SWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 216          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|1173933138|gb|OQR85005.1| (eukaryotic initiation factor 4E [Achlya hypogyna])

HSP 1 Score: 156.762 bits (395), Expect = 5.519e-45
Identity = 69/156 (44.23%), Postives = 109/156 (69.87%), Query Frame = 0
Query:    3 SWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSS 156
            +WEE L+KIYTF+TVEDFW LFN+V+ P++LS  ++Y+LFKEG+RP +E+  N +GG W+    +  + RL++ W++++L LIGE +ED +D+ G VVS+++ QDRL++WTKTA ++ LQ  +    +  LDL     L+F+ +   A +G S  +
Sbjct:   68 TWEENLKKIYTFDTVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRARLDDSWMHVMLALIGEALEDDDDVCGCVVSVRKSQDRLAVWTKTAVNEPLQRAVGRNFRKVLDLGKNEVLKFQSHADAAASGSSFQN 223          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|695463260|ref|XP_009538670.1| (hypothetical protein PHYSODRAFT_566314 [Phytophthora sojae] >gi|348665981|gb|EGZ05809.1| hypothetical protein PHYSODRAFT_566314 [Phytophthora sojae])

HSP 1 Score: 156.762 bits (395), Expect = 7.463e-45
Identity = 71/166 (42.77%), Postives = 113/166 (68.07%), Query Frame = 0
Query:    3 SWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 165
            SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +D+ GAVVS+++ QDR+++W+ TA  ++ Q  I    + +L DL     L+++ +   A +G S  +   V  Y +
Sbjct:   55 SWEENLKNVYTFNTVEDFWCLYNNILAPTKLSIGSNYHLFKEGIRPMWEDPINAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDVCGAVVSVRKAQDRIAIWSATANAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQNEVYVLRYQI 220          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|669169581|ref|XP_008620139.1| (hypothetical protein SDRG_15735 [Saprolegnia diclina VS20] >gi|530728148|gb|EQC26390.1| hypothetical protein SDRG_15735 [Saprolegnia diclina VS20])

HSP 1 Score: 155.606 bits (392), Expect = 1.187e-44
Identity = 71/156 (45.51%), Postives = 108/156 (69.23%), Query Frame = 0
Query:    3 SWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSS 156
            SWEE L+ IYTFETVEDFW LFN+V+ P++LS  ++Y+LFKEG+RP +E+  N +GG W+    +  + RL++ W++++L LIGE +ED +DI G VVS+++ QDRL++WTKTA ++ LQ  +    +  LDL     L+F+ +   A +G S  +
Sbjct:   61 SWEENLKLIYTFETVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRARLDDSWMHVMLALIGEALEDEDDICGCVVSVRKSQDRLAVWTKTAVNEPLQRTVGRNFRKVLDLGKNEVLKFQSHADAAASGSSFQN 216          
BLAST of EWM24979.1 vs. NCBI_GenBank
Match: gi|813148692|ref|XP_012199993.1| (hypothetical protein SPRG_06037 [Saprolegnia parasitica CBS 223.65] >gi|641535587|gb|KDO29497.1| hypothetical protein SPRG_06037 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 155.221 bits (391), Expect = 1.471e-44
Identity = 71/156 (45.51%), Postives = 108/156 (69.23%), Query Frame = 0
Query:    3 SWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSS 156
            SWEE L+ IYTFETVEDFW LFN+V+ P++LS  ++Y+LFKEG+RP +E+  N +GG W+    +  + RL++ W++++L LIGE +ED +DI G VVS+++ QDRL++WTKTA ++ LQ  +    +  LDL     L+F+ +   A +G S  +
Sbjct:   56 SWEENLKLIYTFETVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRPRLDDSWMHVMLALIGEALEDEDDICGCVVSVRKSQDRLAVWTKTAVNEPLQRTVGRNFRKVLDLGKNEVLKFQSHADAAASGSSFQN 211          
The following BLAST results are available for this feature:
BLAST of EWM24979.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106612|gb|EWM24979.1|1.112e-116100.00eukaryotic translation initiation factor iso4e [Na... [more]
gi|585106611|gb|EWM24978.1|3.453e-115100.00eukaryotic translation initiation factor iso4e [Na... [more]
gi|675173023|ref|XP_008895396.1|3.188e-4544.59hypothetical protein PPTG_04839 [Phytophthora para... [more]
gi|301118596|ref|XP_002907026.1|4.496e-4544.59eukaryotic initiation factor 4E, putative [Phytoph... [more]
gi|568041025|gb|ETM38449.1|4.613e-4544.59hypothetical protein L914_15227 [Phytophthora para... [more]
gi|970630899|gb|KUF77704.1|5.154e-4544.59Eukaryotic translation initiation factor 4E [Phyto... [more]
gi|1173933138|gb|OQR85005.1|5.519e-4544.23eukaryotic initiation factor 4E [Achlya hypogyna][more]
gi|695463260|ref|XP_009538670.1|7.463e-4542.77hypothetical protein PHYSODRAFT_566314 [Phytophtho... [more]
gi|669169581|ref|XP_008620139.1|1.187e-4445.51hypothetical protein SDRG_15735 [Saprolegnia dicli... [more]
gi|813148692|ref|XP_012199993.1|1.471e-4445.51hypothetical protein SPRG_06037 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5698rna5698Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications