rna5698, rna5698 (mRNA) Nannochloropsis gaditana

Overview
Namerna5698
Unique Namerna5698
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1113
Alignment locationCM002466.1:611057..612406 +

Link to JBrowse

Properties
Property NameValue
Producteukaryotic translation initiation factor iso4e
Orig transcript idgnl|cribi|Naga_100122g15.3566.mrna
Orig protein idgnl|cribi|Naga_100122g15.3566
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:611057..612406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100122g15gene5505Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5698rna5698-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24979.1cds5683Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5698 ID=rna5698|Name=rna5698|organism=Nannochloropsis gaditana|type=mRNA|length=1113bp
GTTGCTGTCCCTCCCTTCTCCTCCTTTCCCCCCCCATGAATGCCCGTGAA
TCCTGCTCAAAACATATTCATCTTGGCCTCTGGCCATTGGTTGCCTTTCG
AGAGTGCTTTTGGGTGCTTCTATCCGATTTCTGGGAAGGTGTGTTTACTC
TTTTTTCGATCGCATATTATTTCTCTCTCAAGACAAACCCGCTCACGCTG
ATGAGCGCCGAACCCCTTGTCCAAAAAGCCGTGGACGTCAATTGTAGTGG
CAGCGTGATGGACGGGGACACAGAAGGTAGTTGTAGCAGCAAGCCGACAG
ATGGTGAGACCGACAAGCATGTGTTGCAAAATAGGTGGTCCTTCTTCTAC
AATAACCCAAAGGCCAACCCAATGCTGTCTTGGGAGGAAAAGCTTCAGAA
AATCTACACGTTCGAGACGGTGGAAGATTTTTGGGCCCTGTTCAATTCCG
TTGTCGGCCCTTCCCGCTTGAGTATACAGGCCGACTATTATCTGTTTAAA
GAGGGAGTCCGGCCCTCATACGAGGAGAATCCTGAAGGTGGCGTGTGGAT
GTTTAATCTGGAAAAGGGAAACAAGAAGCGCTTGGAGGAGGTCTGGTTGT
ATCTAGTCCTAGGTCTGATCGGAGAGACGATGGAGGATTCTAACGACATT
CTGGGAGCGGTCGTGAGCATCAAGAGGGGACAAGACAGGCTGTCGCTATG
GACGAAGACTGCCGCGGACAAGGAACTGCAAGTTCGGATTGCTACGAGGG
TGAAGATGAGCTTGGACCTGCCACCGGAGACCAAATTGGAGTTTAAACCA
AATCAGAAGGTGGCCGAAGCGGGGGGCTCCATGTCATCAGCGCAGGACGT
GAAGGGCTACACTGTATAACCCTTGACACCCTACCATACAGTATTCAAAT
GCAAACGGAGAACCCCACATTTCTGCAGTTGACCGGGTTCGGAGCGTGCT
GAAATTTGTACAGGCATAACGAAAACAAGGAACCCCGCACACTCTGCTGC
ATAAGTTTGGAAAGAATTTGTGCGGAAGGATCGATTGACGTGCCATATCA
CTTGTTCTTGTTAAAAATGACAATTATTTGTGAGCTTCCTTAATTTCAAA
AACTCATAGCCTA
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protein sequence of rna5698

>rna5698-protein ID=rna5698-protein|Name=rna5698|organism=Nannochloropsis gaditana|type=polypeptide|length=165bp
MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSY
EENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSI
KRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEA
GGSMSSAQDVKGYTV
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mRNA from alignment at CM002466.1:611057..612406+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5698 ID=rna5698|Name=rna5698|organism=Nannochloropsis gaditana|type=mRNA|length=1350bp|location=Sequence derived from alignment at CM002466.1:611057..612406+ (Nannochloropsis gaditana)
GGCATATTTAGTTAGTTCACGGGTGGGGTGAGGATACATGAGATATGGCT
GCTACAAGACGAAAAACCTCTTCATGAGGCAATCCATGTGTTCGTATGTC
ATCGCAAGAAGTGGATTTGTATGTGATATACGTATGCGCCCTGGGACTCT
TTACCAGAATAGAGATTGTTAAGCACCCTGAGATGAGATACGGGGGTTTC
TTGCGGACTTGAAATGAAATACGCGCACCTGTCTGCACACGTATCATCGT
GGTGGGCGGTACAGCGTCCTTTTCAAAATTTAATATCATGGCAGAGCACA
TATTTCGGTACATGTGTATTAGGTCTCTTGTTAGAGACGAACGTCTATCG
CTAGGACAAGTTATGTGGAATGTCACATCTTCCGGCTCAGCTCTCTCTTG
CACGCTCATTCCACATCTATTTTTTAGCATGTGTTGCAAAATAGGTGGTC
CTTCTTCTACAATAACCCAAAGGCCAACCCAATGCTGTCTTGGGAGGAAA
AGCTTCAGAAAATCTACACGTTCGAGACGGTGGAAGATTTTTGGGCCCTG
TTCAATTCCGTTGTCGGCCCTTCCCGCTTGAGTATACAGGCCGACTATTA
TCTGTTTAAAGAGGGAGTCCGGCCCTCATACGAGGAGAATCCTGAAGGTG
GCGTGTGGATGTTTAATCTGGAAAAGGGAAACAAGaagcgcttggaggag
gtctgGTTGTATCTAGTCCTAGGTCTGATCGGAGAGACGATGGAGGATTC
TAACGACATTCTGGGAGCGGTCGTGAGCATCAAGAGGGGACAAGACAGGC
TGTCGCTATGGACGAAGACTGCCGCGGACAAGGAACTGCAAGTTCGGATT
GCTACGAGGGTGAAGATGAGCTTGGACCTGCCACCGGAGACCAAATTGGA
GTTTAAACCAAATCAGAAGGTGAGGCAGAGAGATGAATGCCAGATAAGGG
GTTAAGGGTCTTTTAGAAGTCCACATGGTTGCATTTAGCCGCTTATCGTT
GAATCAAGGCGTACTCAATTGTTAAATTTCTCATTTTATGCTGCAGGTGG
CCGAAGCGGGGGGCTCCATGTCATCAGCGCAGGACGTGAAGGGCTACACT
GTATAACCCTTGACACCCTACCATACAGTATTCAAATGCAAACGGAGAAC
CCCACATTTCTGCAGTTGACCGGGTTCGGAGCGTGCTGAAATTTGTACAG
GCATAACGAAAACAAGGAACCCCGCACACTCTGCTGCATAAGTTTGGAAA
GAATTTGTGCGGAAGGATCGATTGACGTGCCATATCACTTGTTCTTGTTA
AAAATGACAATTATTTGTGAGCTTCCTTAATTTCAAAAACTCATAGCCTA
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Coding sequence (CDS) from alignment at CM002466.1:611057..612406+

>rna5698 ID=rna5698|Name=rna5698|organism=Nannochloropsis gaditana|type=CDS|length=996bp|location=Sequence derived from alignment at CM002466.1:611057..612406+ (Nannochloropsis gaditana)
ATGCTGTCTTGGGAGGAAAAGCTTCAGAAAATCTACACGTTCGAGACGGT
GGAAGATTTTTGGGCCCTGTTCAATTCCGTTGTCGGCCCTTCCCGCTTGA
GTATACAGGCCGACTATTATCTGTTTAAAGAGGGAGTCCGGCCCTCATAC
GAGGAGAATCCTGAAGGTGGCGTGTGGATGTTTAATCTGGAAAAGGGAAA
CAAGaagcgcttggaggaggtctgGTTGTATCTAGTCCTAGGTCTGATCG
GAGAGACGATGGAGGATTCTAACGACATTCTGGGAGCGGTCGTGAGCATC
AAGAGGGGACAAGACAGGCTGTCGCTATGGACGAAGACTGCCGCGGACAA
GGAACTGCAAGTTCGGATTGCTACGAGGGTGAAGATGAGCTTGGACCTGC
CACCGGAGACCAAATTGGAGTTTAAACCAAATCAGAAGGTGGCCGAAGCG
GGGGGCTCCATGTCATCAGCGCAGGACGTGAAGGGCTACACTGTATAAAT
GCTGTCTTGGGAGGAAAAGCTTCAGAAAATCTACACGTTCGAGACGGTGG
AAGATTTTTGGGCCCTGTTCAATTCCGTTGTCGGCCCTTCCCGCTTGAGT
ATACAGGCCGACTATTATCTGTTTAAAGAGGGAGTCCGGCCCTCATACGA
GGAGAATCCTGAAGGTGGCGTGTGGATGTTTAATCTGGAAAAGGGAAACA
AGaagcgcttggaggaggtctgGTTGTATCTAGTCCTAGGTCTGATCGGA
GAGACGATGGAGGATTCTAACGACATTCTGGGAGCGGTCGTGAGCATCAA
GAGGGGACAAGACAGGCTGTCGCTATGGACGAAGACTGCCGCGGACAAGG
AACTGCAAGTTCGGATTGCTACGAGGGTGAAGATGAGCTTGGACCTGCCA
CCGGAGACCAAATTGGAGTTTAAACCAAATCAGAAGGTGGCCGAAGCGGG
GGGCTCCATGTCATCAGCGCAGGACGTGAAGGGCTACACTGTATAA
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Synonyms
Publications