rna5691, rna5691 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5691
Unique Name	rna5691
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2136
Alignment location	CM002466.1:598375..600039 -

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Properties


Property Name	Value
Product	dihydrouridine synthase
Orig transcript id	gnl\|cribi\|Naga_100068g29.2439.mrna
Orig protein id	gnl\|cribi\|Naga_100068g29.2439
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:598375..600039 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100068g29	gene5499	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5691	rna5691-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25015.1	cds5676	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:598375..600039-
coding sequence from alignment at CM002466.1:598375..600039-

mRNA sequence

>rna5691 ID=rna5691|Name=rna5691|organism=Nannochloropsis gaditana|type=mRNA|length=2136bp
TTGTAGGTACGAAGTCCCGCTGCCACTGAACCGTGCTGGAGAAGGGAGGC
TCACTGTCAAGGAAAGGACCTGCGGCCGACCGCAGACACATAAAACGCCT
CCCTGCATATTTACAATCAATGACAAATCTGCAGCGGATCGTGCAAGCCT
CGGCTGCTTTCAATAGAAGACGACCTCCTTCGATCAATAGATCAAGATTT
CCGTCTGTATGGGTTCATTTTTGCTTGTTTTTGCTCTTGTCCTTGGTGAG
GCCGGTAAGCGGTCAGGATCAAACTGGCGCCGTCCTGAACCCAGGAAAGT
TACGTGCGTCAGCCGATGAAGCCTTTGCCACAGGCGACCTAGACAAGGCC
ATCAAATTTCTCTCTCAAGCCATACAGATCGAGCCAGAGAATGAGAAAAA
CCATTACAAGCGTTACCGAGCTCATCTACGGGGGAAGAAATACCGCGAGG
CCCTCCAAGACTTGAGCACGTCCCTGCAACTTGACCCGCTGAACGCTGCC
AAGATGCAACAGCGGGCTAAGTTGTTCAAAATGATGGGACGGTGCGCAGA
CGCGGTGGGGGAATATGAGAAATTGGAGGGCATGCTGGAGACAGGGGCGG
GGGGCGTGACCGAGGGGGAGATGGGGGAAGGCGCCAGGGAAGCGCGGCAG
TGCCAACACAGCCTGGCCGAGGCGGAGCGGTTGATGGAAATGGGAGATTG
GCGTGCGGCTCGCCAGCACCTCGATGTGGCCGTCACCCTGACGGAGGTAG
CGCCGGAGCTGCTGCTTCGTCGCGCGCGCTGTAATTTTGAGGAGAAAGAT
TTTTACTCGGCGGCGGCCGACACAGGGCGAGCCATCAAGCTGGATGGAAG
TAGCATTCCAGCCTTGGAGCTGCGCGGGCTCGCATACTACAAACTGGGGG
AGTTCGACATGGCGCAGACCCATTTCCGCGAGGGTTTGAAGTTCGACCCG
GAGCACCTCGGGTGCAAGGAGGGACATCGACGTGTGAAGAAGATGCAAAA
GGCGGCGGAGAAAGGGAGGAAAGCCGTGGATGTGGGCGACGTGGCGCAGG
GCGTGGGCTACCTCCAGGAGGCTATGGCTGTGGATCCCTCGCACGTGTAC
TTTAACGCCCCGATCCTCTTGCAGATCGCTCGCGCCCACATGGGAGTCGC
ATCCTTTGCGCCCGCCAGGCAGGCCGTGGACTCAGCCATGCAGATGAACC
CCCGCTTGAGCGAGGCACACATCGTGTTGAGTGACCTGTTGCAGGCGCAA
GAGGAGTACGAGGAAGCCGTGCGGGTTCTGAAGTCGGCGGCGGAAGCTTT
CGCAGAGGATGCCTCGGTCCAAGAAGCTCTCAAAAAGGCCGAGATCGCCC
TGAAACAGAGCAAGGAGGTAAACTACTACAAGGTTCTAGGCGTGGACCGG
CGTGCAACCACGTCGGCAATCAAAAAGGCCTATCGCAACATGGCGAAAAT
CTATCACCCCGACAAGCAAGCTGAAGCCTCTCCCGAGGAAAAAGAAAAGG
CGGAGCGGGAATTTTTGAAAATTGCACAGGCTTATGAGGTGCTGAGCGAT
GAGGAGACCCGTGCCAAGTACGACCGGGGGGAAGACGTGTCAGGCCAGGC
GCAACAGGCGCACCACCACAACCCTTTTGGAGGCGGCGGTCCCTTCGGAG
GGGGCCAGCATTTTACCTTCCACTTTCATTAGGGCCTTCGGAGGTATCGT
TGAGCTGGGGCGTGCGGTGAGACAGCGTAGTACAGGGCGAACAGAACATT
TCCAGGACAGGGACTCCGGAGACCAGGGTTCCTACCCTGCCGACGACGAG
GGGGTAACGACTCTTGAAGCGATTTCAATTTAGACTGGATCAGGCGCATG
GGTGGAGGTGTCGAAATTACCATGTGTATAGTTAGCAGCGGTACCCGCAT
GATGTGTGACACGCACGTGGAGTCCGCGATGGGAACGACCGGCAGCTTAA
AAAAGCATCTGAAAAGGCAGGCCCCTTGATTTTAAAAAAATTATGCGAGA
AGAGTAGGAAGAAATGGTAGGAAGAAGGATGAAAGAACTCTGCGAAATGC
AACATTGAAGGTATTGTTGGTGTAAAGCGTTGCACCACTTAGGGCACTGG
CCATTCGGTGCCGCTAGGGAAAAGGCTCAGTCTTCC

protein sequence of rna5691

>rna5691-protein ID=rna5691-protein|Name=rna5691|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MAGVTAACPLQAARISSRGLAHEQALLLQQQPSLPLDLEAHVARAWRWYR
SMGSPRYVCAPMVDQSELAFRLLCRRYGTQLAFSPMVHAACYLREKRSKR
NEVFFCNTNPQDWPLIVQLCGNDPGVLLAAAKEICRIEGVCAVDLNLGCP
QGIARKGKYGAFLLHQADLVVRIVSTLSRELDKPVTCKIRLLPTFSETLA
LCQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPVPVFANG
GIADLDDVEKCLSFTKVDGVMSSEALLENPGLFSRNVNVVTGHRANQLDL
AEEYLELAAQHPPDRLKCVRAHVFKLVFTGVQLFEDLRDALVAAENVKEM
RWVVGEIRRRALERAQGRDVGSAGERSWYWRHWHKGVTDKGSELPRQGKE
GGKRRGEEGGVESEGMGCLFGAED

mRNA from alignment at CM002466.1:598375..600039-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5691 ID=rna5691|Name=rna5691|organism=Nannochloropsis gaditana|type=mRNA|length=1665bp|location=Sequence derived from alignment at CM002466.1:598375..600039- (Nannochloropsis gaditana)
CAGGGACCATGGCTTCCCCGCAACCTGCCTGAAGCAGGGGACAAAGTATG
ATCCTGCTGCCTCGATCCTCCCCGCAATATTCGCAACTGCCGCCTAATTT
CTTCTTCGGAACATACAGGACGGGTGAATGGCTGGTGTGACGGCGGCTTG
TCCTTTACAGGCCGCTAGAATTAGTTCGAGGGGATTGGCCCACGAACAAG
CTCTGCTGCTGCAGCAACAGCCGAGCTTACCATTGGATCTGGAAGCACAC
GTAGCCAGGGCATGGCGATGGTATCGAAGTATGGGGAGTCCTCGATATGT
GTGTGCTCCTATGGTAGATCAATCGGAGCTGGCATTTCGCTTGCTGTGTC
GGTACGTGGTCCGTGGAGAGGTGGACCGTCTACTTTCAATAGTTGGAACT
TTTTTATTGTTATTTTTTCGGAGCTTATTAGAACGACTGTTCGTACACAG
AAATGGTCTCATAGTGGTCATTCCTATTTCCAATCATCACATGTTTTCTC
AAACAATGAACGCTTGCTTAATGTGCTTAGTCGGTATGGCACTCAACTAG
CCTTCTCTCCTATGGTCCATGCTGCCTGCTACCTGCGAGAGAAAAGGAGC
AAGCGCAACGAGGTTTTTTTTTGCAACACAAATCCACAAGATTGGCCATT
GATCGTCCAACTTTGTGGGAACGACCCAGGCGTTCTTTTGGCTGCCGCAA
AGGAGATCTGTCGTATTGAAGGTGTGTGTGCCGTCGATTTAAACTTGGGA
TGTCCACAAGGAATCGCGCGCAAGGGAAAATATGGCGCCTTCTTGCTCCA
CCAAGCAGATTTAGTGGTGCGCATTGTTTCCACATTGAGTCGAGAGCTGG
ACAAGCCCGTAACCTGCAAAATACGCCTGCTTCCCACGTTCAGCGAGACT
TTGGCCTTGTGTCAGGCCTTGGTGGGTGCCGGCTGCTCCTTGCTGACCGT
GCACGGGCGCACCAAAGAGCAAAACAAGCACTTGGTGGGCTCGTGTGACT
GGGAAGCAATAAGGAAAATCAAGGCTGCCGTGCCCGTTCCTGTTTTCGCC
AACGGTGGTATCGCCGACCTGGACGACGTGGAGAAGTGTCTGTCCTTCAC
GAAAGTCGACGGAGTCATGTCCTCGGAGGCATTATTGGAGAACCCCGGTC
TCTTCTCCCGGAACGTTAACGTCGTCACTGGGCACCGGGCCAATCAGCTC
GACCTTGCCGAGGAATACCTAGAACTTGCGGCCCAGCATCCACCGGATCG
ACTGAAATGCGTGCGGGCCCATGTCTTCAAGCTGGTCTTCACGGGCGTGC
AGCTTTTCGAAGATCTTCGGGACGCGCTGGTGGCGGCGGAAAACGTGAAG
GAAATGAGATGGGTGGTGGGAGAAATTAGAAGGAGGGCGCTAGAGCGGGC
CCAAGGGCGGGATGTAGGCAGCGCGGGAGAGAGGTCGTGGTATTGGAGGC
ATTGGCACAAAGGAGTGACAGATAAAGGGAGCGAGCTACCCAGGCAGGGC
AAAGAGGGAGGGAAGAGACGAGGGGAAGAGGGAGGGGTGGAAAGTGAGGG
AATGGGGTGTTTGTTCGGGGCGGAAGACTGAGCCTTTTCCCTAGCGGCAC
CGAATGGCCAGTGCCCTAAGTGGTGCAACGCTTTACACCAACAATACCTT
CAATGTTGCATTTCG

Coding sequence (CDS) from alignment at CM002466.1:598375..600039-

>rna5691 ID=rna5691|Name=rna5691|organism=Nannochloropsis gaditana|type=CDS|length=2550bp|location=Sequence derived from alignment at CM002466.1:598375..600039- (Nannochloropsis gaditana)
TCGGTATGGCACTCAACTAGCCTTCTCTCCTATGGTCCATGCTGCCTGCT
ACCTGCGAGAGAAAAGGAGCAAGCGCAACGAGGTTTTTTTTTGCAACACA
AATCCACAAGATTGGCCATTGATCGTCCAACTTTGTGGGAACGACCCAGG
CGTTCTTTTGGCTGCCGCAAAGGAGATCTGTCGTATTGAAGGTGTGTGTG
CCGTCGATTTAAACTTGGGATGTCCACAAGGAATCGCGCGCAAGGGAAAA
TATGGCGCCTTCTTGCTCCACCAAGCAGATTTAGTGGTGCGCATTGTTTC
CACATTGAGTCGAGAGCTGGACAAGCCCGTAACCTGCAAAATACGCCTGC
TTCCCACGTTCAGCGAGACTTTGGCCTTGTGTCAGGCCTTGGTGGGTGCC
GGCTGCTCCTTGCTGACCGTGCACGGGCGCACCAAAGAGCAAAACAAGCA
CTTGGTGGGCTCGTGTGACTGGGAAGCAATAAGGAAAATCAAGGCTGCCG
TGCCCGTTCCTGTTTTCGCCAACGGTGGTATCGCCGACCTGGACGACGTG
GAGAAGTGTCTGTCCTTCACGAAAGTCGACGGAGTCATGTCCTCGGAGGC
ATTATTGGAGAACCCCGGTCTCTTCTCCCGGAACGTTAACGTCGTCACTG
GGCACCGGGCCAATCAGCTCGACCTTGCCGAGGAATACCTAGAACTTGCG
GCCCAGCATCCACCGGATCGACTGAAATGCGTGCGGGCCCATGTCTTCAA
GCTGGTCTTCACGGGCGTGCAGCTTTTCGAAGATCTTCGGGACGCGCTGG
TGGCGGCGGAAAACGTGAAGGAAATGAGATGGGTGGTGGGAGAAATTAGA
AGGAGGGCGCTAGAGCGGGCCCAAGGGCGGGATGTAGGCAGCGCGGGAGA
GAGGTCGTGGTATTGGAGGCATTGGCACAAAGGAGTGACAGATAAAGGGA
GCGAGCTACCCAGGCAGGGCAAAGAGGGAGGGAAGAGACGAGGGGAAGAG
GGAGGGGTGGAAAGTGAGGGAATGGGGTGTTTGTTCGGGGCGGAAGACTG
AATGGCTGGTGTGACGGCGGCTTGTCCTTTACAGGCCGCTAGAATTAGTT
CGAGGGGATTGGCCCACGAACAAGCTCTGCTGCTGCAGCAACAGCCGAGC
TTACCATTGGATCTGGAAGCACACGTAGCCAGGGCATGGCGATGGTATCG
AAGTATGGGGAGTCCTCGATATGTGTGTGCTCCTATGGTAGATCAATCGG
AGCTGGCATTTCGCTTGCTGTGTCGTCGGTATGGCACTCAACTAGCCTTC
TCTCCTATGGTCCATGCTGCCTGCTACCTGCGAGAGAAAAGGAGCAAGCG
CAACGAGGTTTTTTTTTGCAACACAAATCCACAAGATTGGCCATTGATCG
TCCAACTTTGTGGGAACGACCCAGGCGTTCTTTTGGCTGCCGCAAAGGAG
ATCTGTCGTATTGAAGGTGTGTGTGCCGTCGATTTAAACTTGGGATGTCC
ACAAGGAATCGCGCGCAAGGGAAAATATGGCGCCTTCTTGCTCCACCAAG
CAGATTTAGTGGTGCGCATTGTTTCCACATTGAGTCGAGAGCTGGACAAG
CCCGTAACCTGCAAAATACGCCTGCTTCCCACGTTCAGCGAGACTTTGGC
CTTGTGTCAGGCCTTGGTGGGTGCCGGCTGCTCCTTGCTGACCGTGCACG
GGCGCACCAAAGAGCAAAACAAGCACTTGGTGGGCTCGTGTGACTGGGAA
GCAATAAGGAAAATCAAGGCTGCCGTGCCCGTTCCTGTTTTCGCCAACGG
TGGTATCGCCGACCTGGACGACGTGGAGAAGTGTCTGTCCTTCACGAAAG
TCGACGGAGTCATGTCCTCGGAGGCATTATTGGAGAACCCCGGTCTCTTC
TCCCGGAACGTTAACGTCGTCACTGGGCACCGGGCCAATCAGCTCGACCT
TGCCGAGGAATACCTAGAACTTGCGGCCCAGCATCCACCGGATCGACTGA
AATGCGTGCGGGCCCATGTCTTCAAGCTGGTCTTCACGGGCGTGCAGCTT
TTCGAAGATCTTCGGGACGCGCTGGTGGCGGCGGAAAACGTGAAGGAAAT
GAGATGGGTGGTGGGAGAAATTAGAAGGAGGGCGCTAGAGCGGGCCCAAG
GGCGGGATGTAGGCAGCGCGGGAGAGAGGTCGTGGTATTGGAGGCATTGG
CACAAAGGAGTGACAGATAAAGGGAGCGAGCTACCCAGGCAGGGCAAAGA
GGGAGGGAAGAGACGAGGGGAAGAGGGAGGGGTGGAAAGTGAGGGAATGG
GGTGTTTGTTCGGGGCGGAAGACTGAATGGCTGGTGTGACGGCGGCTTGT
CCTTTACAGGCCGCTAGAATTAGTTCGAGGGGATTGGCCCACGAACAAGC
TCTGCTGCTGCAGCAACAGCCGAGCTTACCATTGGATCTGGAAGCACACG
TAGCCAGGGCATGGCGATGGTATCGAAGTATGGGGAGTCCTCGATATGTG
TGTGCTCCTATGGTAGATCAATCGGAGCTGGCATTTCGCTTGCTGTGTCG

Synonyms

Publications