EWM24998.1, cds5671 (CDS) Nannochloropsis gaditana

Overview
NameEWM24998.1
Unique Namecds5671
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:582377..583766 -
Alignment locationCM002466.1:581610..582226 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24998.1
ProductCholine transporter
Orig transcript idgnl|cribi|Naga_100068g23.2422.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:582377..583766 -
CM002466.1supercontigCM002466.1:581610..582226 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Homology
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|585106633|gb|EWM24998.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 1375.53 bits (3559), Expect = 0.000e+0
Identity = 668/668 (100.00%), Postives = 668/668 (100.00%), Query Frame = 0
Query:    1 MDQTTNGLSVPSPYPVYDSQATHEGHSQEQQHQQSSTSTHQNGYRNRERQREDAQMGSNTESQQLHQSAGPGTLSPSGLPAIVAGESTASSMHDMGEDSYVGEVNSNGAYNVEAYDLHTNAVDPYWKWGGEAKWEGGRPAFVDPAKKMTRQSSSNLFGKQVSIGKLSTSVQDGATTVAGSEGEVEPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCHVSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAWSEAMAATEL 668
            MDQTTNGLSVPSPYPVYDSQATHEGHSQEQQHQQSSTSTHQNGYRNRERQREDAQMGSNTESQQLHQSAGPGTLSPSGLPAIVAGESTASSMHDMGEDSYVGEVNSNGAYNVEAYDLHTNAVDPYWKWGGEAKWEGGRPAFVDPAKKMTRQSSSNLFGKQVSIGKLSTSVQDGATTVAGSEGEVEPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCHVSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAWSEAMAATEL
Sbjct:    1 MDQTTNGLSVPSPYPVYDSQATHEGHSQEQQHQQSSTSTHQNGYRNRERQREDAQMGSNTESQQLHQSAGPGTLSPSGLPAIVAGESTASSMHDMGEDSYVGEVNSNGAYNVEAYDLHTNAVDPYWKWGGEAKWEGGRPAFVDPAKKMTRQSSSNLFGKQVSIGKLSTSVQDGATTVAGSEGEVEPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCHVSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAWSEAMAATEL 668          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|553192695|ref|XP_005855625.1| (hypothetical protein NGA_0598810 [Nannochloropsis gaditana CCMP526] >gi|422293431|gb|EKU20731.1| hypothetical protein NGA_0598810 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 274.633 bits (701), Expect = 1.808e-79
Identity = 192/605 (31.74%), Postives = 295/605 (48.76%), Query Frame = 0
Query:   77 SGLPAIVAGESTASSMHDMGEDSYVGEVNSNGAY---NVEAYDLHTNAVDP--YWKWGGEAKWEGGRPA--FVDPAKKMTRQSSSNLFGKQVSIGKLSTSVQDGATTVAGSEGEVEPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVD-----ARDNAMQADVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCH------VSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLL--EMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAWSE 661
            +G+P +    + A  M   G+  YV +  S   Y    V+    H+   +P  Y    G  + +  RP   +  P K +               GK       G T    + G  +  A   QD WA  LF+AHL  I +LAF  GL  L +D D             +   +  S L ++  G  V    AA  S L    +L +A  +I  ALI +I    V  + A++     + I++ +  A+ + +Y  VR+RI FAS NL  +  A       + ++ ++   Q+ W  +W LA  G  + +    V   G ++   +C TD      +  C CS   AE     +  G C        +  P  I+FLL +S+FWGS+V++ ++ C+ +G+VA+WW++G  +G    +F RA +TSFGSICFG+L L+++RA  Q+L     Q  + NA TCV +CL+ +++ +   FNRYA  Y A YGT F ESG   F LFK  GLT +IND L       ++   A+L A+VG+ +   FGL G +  +LA VGF  G  V  IV+S++D+ VATVFV +A+      ++ P LY  + +AW++
Sbjct:   42 NGVPPMYQ-PAVAQPMMVQGQPVYVQQPASGNYYTPQQVQVVQPHSQFQNPQQYPSKTGAVEMQQYRPEPQYQQPEKPLPMTQP----------GKPGAGETGGDTASGAASGGGDRDAAKCQDAWAAVLFLAHLGFIAYLAFARGLKAL-RDQDLTTDTPTTEDPTGEHYRIAESGLTSVYIGLAVVLGAAAAWSALWTGILLRNAAHIITAALIGSIISSGVGVILALVYGNFVMAIMAGLMGAIQVMWYYCVRDRIPFASMNLKCSATATLQYPSILFLAAVMTVVQMGWALLWQLAAYGVAVTKGAEIVVIEGTSFLLSQC-TD-----TAGACACSRETAEGVVALSEAGVCKDLSEFSANVSP-LIMFLLFISLFWGSLVVKNVLFCSAAGMVADWWYSGQNKGVVSKSFFRASSTSFGSICFGSLILAVLRALRQMLHAGRRQGQRENALTCVVNCLMAIIERLMQIFNRYAMVYCATYGTGFRESGTKTFELFKRAGLTAIINDDLAETALNLVALIIALLTAVVGFVYGTMFGLGGNWPVILAVVGFFAGFFVSLIVMSVLDAGVATVFVVFAEDPQAFAQSHPALYEELAQAWAK 627          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|585101254|gb|EWM21181.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 275.789 bits (704), Expect = 3.033e-79
Identity = 200/656 (30.49%), Postives = 306/656 (46.65%), Query Frame = 0
Query:   46 NRERQREDAQMGSNTESQQLHQSAGPGTLSP--------------------SGLPAIVAGESTASSMHDMGEDSYVGEVNSNGAY---NVEAYDLHTNAVDP--YWKWGGEAKWEGGRPA--FVDPAKKMTRQSSSNLFGKQVSIGKLSTSVQDGATTVAGSEGEVEPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVD-----ARDNAMQADVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCH------VSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLL--EMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAWSE 661
            N  R    A M SN    +   +    +L P                    +G+P +    + A  M   G+  YV +  S   Y    V+    H+   +P  Y    G  + +  RP   +  P K +               GK       G T    + G  +  A   QD WA  LF+AHL  I +LAF  GL  L +D D             +   +  S L ++  G  V    AA  S L    +L +A  +I  ALI +I    V  + A++     + I++ +  A+ + +Y  VR+RI FAS NL  +  A       + ++ ++   Q+ W  +W LA  G  + +    V   G ++   +C TD      +  C CS   AE     +  G C        +  P  I+FLL +S+FWGS+V++ ++ C+ +G+VA+WW++G  +G    +F RA +TSFGSICFG+L L+++RA  Q+L     Q  + NA TCV +CL+ +++ +   FNRYA  Y A YGT F ESG   F LFK  GLT +IND L       ++   A+L A+VG+ +   FGL G +  +LA VGF  G  V  IV+S++D+ VATVFV +A+      ++ P LY  + +AW++
Sbjct:   54 NASRATPAALMASNDRKDEWQNAPNAPSLYPQVPPQGFYAPPQNNEQGGQYNGVPPMYQ-PAVAQPMMVQGQPVYVQQPASGNYYTPQQVQVVQPHSQFQNPQQYPSKTGAVEMQQYRPEPQYQQPEKPLPMTQP----------GKPGAGETGGDTASGAASGGGDRDAAKCQDAWAAVLFLAHLGFIAYLAFARGLKAL-RDQDLTTDTPTTEDPTGEHYRIAESGLTSVYIGLAVVLGAAAAWSALWTGILLRNAAHIITAALIGSIISSGVGVILALVYGNFVMAIMAGLMGAIQVMWYYCVRDRIPFASMNLKCSATATLQYPSILFLAAVMTVVQMGWALLWQLAAYGVAVTKGAEIVVIEGTSFLLSQC-TD-----TAGACACSRETAEGVVALSEAGVCKDLSEFSANVSP-LIMFLLFISLFWGSLVVKNVLFCSAAGMVADWWYSGQNKGVVSKSFFRASSTSFGSICFGSLILAVLRALRQMLHAGRRQGQRENALTCVVNCLMAIIERLMQIFNRYAMVYCATYGTGFRESGTKTFELFKRAGLTAIINDDLAETALNLVALIIALLTAVVGFVYGTMFGLGGNWPVILAVVGFFAGFFVSLIVMSVLDAGVATVFVVFAEDPQAFAQSHPALYEELAQAWAK 690          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|553181489|ref|XP_005853576.1| (hypothetical protein NGA_0598820, partial [Nannochloropsis gaditana CCMP526] >gi|422295487|gb|EKU22786.1| hypothetical protein NGA_0598820, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 264.233 bits (674), Expect = 6.729e-77
Identity = 172/502 (34.26%), Postives = 262/502 (52.19%), Query Frame = 0
Query:  173 GATTVAGSEGEVEPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVD-----ARDNAMQADVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCH------VSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLL--EMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAWSE 661
            G T    + G  +  A   QD WA  LF+AHL  I +LAF  GL  L +D D             +   +  S L ++  G  V    AA  S L    +L +A  +I  ALI +I    V  + A++     + I++ +  A+ + +Y  VR+RI FAS NL  +  A       + ++ ++   Q+ W  +W LA  G  + +    V   G ++   +C TD      +  C CS   AE     +  G C        +  P  I+FLL +S+FWGS+V++ ++ C+ +G+VA+WW++G  +G    +F RA +TSFGSICFG+L L+++RA  Q+L     Q  + NA TCV +CL+ +++ +   FNRYA  Y A YGT F ESG   F LFK  GLT +IND L       ++   A+L A+VG+ +   FGL G +  +LA VGF  G  V  IV+S++D+ VATVFV +A+      ++ P LY  + +AW++
Sbjct:    2 GDTASGAASGGGDRDAAKCQDAWAAVLFLAHLGFIAYLAFARGLKAL-RDQDLTTDTPTTEDPTGEHYRIAESGLTSVYIGLAVVLGAAAAWSALWTGILLRNAAHIITAALIGSIISSGVGVILALVYGNFVMAIMAGLMGAIQVMWYYCVRDRIPFASMNLKCSATATLQYPSILFLAAVMTVVQMGWALLWQLAAYGVAVTKGAEIVVIEGTSFLLSQC-TD-----TAGACACSRETAEGVVALSEAGVCKDLSEFSANVSP-LIMFLLFISLFWGSLVVKNVLFCSAAGMVADWWYSGQNKGVVSKSFFRASSTSFGSICFGSLILAVLRALRQMLHAGRRQGQRENALTCVVNCLMAIIERLMQIFNRYAMVYCATYGTGFRESGTKTFELFKRAGLTAIINDDLAETALNLVALIIALLTAVVGFVYGTMFGLGGNWPVILAVVGFFAGFFVSLIVMSVLDAGVATVFVVFAEDPQAFAQSHPALYEELAQAWAK 495          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|1173955612|gb|OQS02555.1| (hypothetical protein THRCLA_05080 [Thraustotheca clavata])

HSP 1 Score: 241.121 bits (614), Expect = 5.702e-68
Identity = 172/532 (32.33%), Postives = 272/532 (51.13%), Query Frame = 0
Query:  148 MTRQSSSNL--FGKQVSIGKLSTSVQDGATTVAGSEGEVEP---AATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQSVQN--SSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGA---LLPQKGFT-----VTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCHVSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVG--YGFAMAFGLDGGYKAVLAGV-GFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAWSE 661
            M ++++SNL  +G  V++   S     G     G+   ++P   AAT  +D    FLF+ ++  I  L   WG+P+L     + ++  ++   +       L  +        + +AVLS+L L  +   AR +I  +L  ++ + ++ A+ A++  Q  L IL+ IFA   +CY   VR+RI FA+ NL     AI   S    V+F ++  Q+VW  VW+ A  G    LL  K  T     +  GG       C +++ Y   +YVC    N   + ++TT +G            F +L+S FWG  V++ I H T +G VA WW++   +G T  + KR +TTSFGSIC G+L +++++A  Q L E  + + +A  C+A C+L  ++S+  YFNR+AF YV +YG  F ++G+    LF+ +G   +IND LV N   F + G   L A +G  Y +      +  Y  VL  V G  VG+ V  I LS++DSAVATVFVC+A+    LQ++  E +  +   W  
Sbjct:    1 MYQKNTSNLDPYGIPVAVPAPS-----GGNVQLGAVQSMKPQVAAATGLRDWPFAFLFLGNVVAIVVLLVMWGIPVLTDKSSSSNSTTKSSSSNNFISSKDLHTVLIYAAAMAVISAVLSFLMLSFITKFARGMITFSLWFSVGLDVLFAIYAVVKHQYVLAILATIFALFAICYAFAVRDRIPFAAANLRCGAAAIKKHSSTYCVAFSMLLLQIVWVGVWSFAAFGLSNHLLENKTKTYNSNGLANGGRCNANSMCYSNYCY---NYVCK-DTNALADLKSTTYVGY-----------FFMLISFFWGMNVVKNITHATVAGTVATWWYSSDSRGATGASLKRTLTTSFGSICLGSLIVAVLQALRQ-LAEEARRQGDAAACIAECILGCLESMMEYFNRWAFIYVGIYGYKFTDAGKAVIGLFRDRGFETIINDDLVGNALGFAALGVGFLCAGLGMIYTYIDTTNFNFQYANVLVPVLGLCVGIAVSIIPLSVIDSAVATVFVCFAEDPAALQQSHQEHFNELMYEWHR 511          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|698781847|ref|XP_009823967.1| (hypothetical protein H257_02143 [Aphanomyces astaci] >gi|574121691|gb|ETV87168.1| hypothetical protein H257_02143 [Aphanomyces astaci])

HSP 1 Score: 228.024 bits (580), Expect = 2.588e-63
Identity = 161/507 (31.76%), Postives = 254/507 (50.10%), Query Frame = 0
Query:  167 STSVQDGATTVAGSEGEVEP----AATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQS----VQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCHVSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFA---MAFGLDGGYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAWSEA 662
            + +V  G   + G    ++P    + + ++DV    LF+A++  I  +    GLPLL+    +  ++ QA+  +      +  +  +    T   + +A+++YL L+ VL HA+ +I  +L A + +  V A AA+ +  + L +L  +F    LCY   V++RI FA  NL VA  A+        V+F ++  Q+ W F+W +ALVG            G +  G     +         VC  S N           G+  V+       F +LVS++WG  V++Y++H T +G VA WW  G  Q  T   F+RA+TTSFGSIC G+L ++I+ A   +  E +K K N   CVA C+L ++  I  Y NR+AF YV MYG  F  +G+  + LF+++GL+ ++ND L+      LS    ++ AL+   +     A     G   +L  +G   G+ V  I LS+V SAVATVFVC+A+    L +  PEL+  M  AW  A
Sbjct:    3 TATVATGVVAIPGPFQVIKPPQPSSTSTWKDVPYAVLFVANVVAIVAVMVSLGLPLLQAATTSSSSSGQANATASSSEFTSGDMATVVAVATALAVVSAIVAYLLLQVVLMHAKHIILYSLWANVILCFVFAAAAIASGVVVLALLFIVFGFFSLCYLHAVQSRILFAGANLQVAAAAVKKHWSIFPVAFALMAVQVAWVFIWAIALVGVFQKATSPVPNLGASVAGTSCSASSECESD---VCAKSSNATRLTCQPFIPGQAIVT------YFFMLVSLYWGVNVVKYLLHTTVAGTVATWWAAGDSQSATGGAFRRAMTTSFGSICMGSLLVAILEALESMAKEARK-KGNGVACVAECILNMLRGILEYINRWAFVYVGMYGFPFAHAGKAVYGLFQTRGLSAIVNDDLIGAAMGSLSLACGLICALLALAYTYIDTAHTSFDGANLILPLMGLAFGVGVTVIPLSVVSSAVATVFVCFAEDPAALSRTHPELHNEMVGAWRLA 499          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|669141374|ref|XP_008606249.1| (hypothetical protein SDRG_02440 [Saprolegnia diclina VS20] >gi|530742308|gb|EQC40550.1| hypothetical protein SDRG_02440 [Saprolegnia diclina VS20])

HSP 1 Score: 222.246 bits (565), Expect = 5.447e-61
Identity = 160/551 (29.04%), Postives = 262/551 (47.55%), Query Frame = 0
Query:  115 YDLHTNAVDPYWKWGGEAKWEGGRPAFVDPAKKMTRQSSSNLFGKQVSIGKLSTSVQDGATTVAGSEGEVEPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQSV-QNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGAL--LPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCHVSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGY---KAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAW 659
            Y  +T+A+DPY    G    +GG  A + P + M  Q+                                 PA+T Y+D     LFI ++A +  L   WG+P+L+       +       ++  +  +  +    +V  + + VLS L L  ++  A  +I  +L   + + ++  + A +  Q  L IL  IF    LCY   VR+RI FA+ NL  A  AI   +    V+F ++F Q+VW  VW +A +G    L +K  + +  G   G   C  +   + +     CS     E  +        + S      F +L+S FWG   ++ + H T +G VA WW++    G T  + KR +TTSFGSIC G+L ++I++A  Q+  E ++S  +A  C+A C+L  + S+  YFNR+AF YV +YG  F ++G+    LF+ +G   +IND L+ NV  F S G   L A +G  +      +  +   + ++  +G + G+ +  I  S++DSAVAT+FVC+A+    LQ + PE +  +   W
Sbjct:    2 YQKNTSAMDPYGIPVGVPAPQGGT-AHLGPVQSMKPQA---------------------------------PASTGYRDWPFAILFIGNVAAMIVLLVTWGIPVLQNSSSTTTSTKSTSSNNLLSDKEMRTVLIISSVMVVLSGVLSLLMLSFMVRFASGMITFSLWFGVGLNVLFTIYAAIKQQYGLAILGAIFVLFSLCYAFAVRDRIPFAAANLRCAAAAIKKHASTYCVAFSMLFLQIVWVAVWAIAALGLANHLNEKDSSTSTRGKPNGS-SCNVNSDCMSNK----CSATYQCEAAS--------LKSASYVAYFFMLISFFWGMQTIKNVTHATVAGTVATWWYSTNSAGATGASLKRTLTTSFGSICLGSLIVAILQALRQLAEEARRS-GDAAACIAECILGCLQSLMEYFNRWAFVYVGIYGYKFTDAGKAVIGLFRDRGFDTIINDDLIGNVLLFASLGVGFLCAGLGLVYTYIDPANTTFTNSQVIIPIMGLIFGIGISIIPFSVIDSAVATIFVCFAEDPAALQTSHPEHFNELMTEW 504          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|813141736|ref|XP_012199058.1| (hypothetical protein SPRG_19805 [Saprolegnia parasitica CBS 223.65] >gi|641536365|gb|KDO30254.1| hypothetical protein SPRG_19805 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 219.164 bits (557), Expect = 6.266e-60
Identity = 165/556 (29.68%), Postives = 262/556 (47.12%), Query Frame = 0
Query:  115 YDLHTNAVDPYWKWGGEAKWEGGRPAFVDPAKKMTRQSSSNLFGKQVSIGKLSTSVQDGATTVAGSEGEVEPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQA---DVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGAL--LPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCH---VSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDGGY---KAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAW 659
            Y  +T+A+DPY    G    +GG  A + P + M  Q+                                 PA T Y+D     LFI ++A +  L   WG+P+L+    +  +       ++ S +    V + +G  V   G  VLS + L  ++  A  +I  +L   + + ++  + A++  Q  L IL  IF  L LCY   VR+RI FA+ NL  A  AI   +    V+F ++  Q+VW  VW  A +G    L +K  T +  G   G                  CS +        +A  RC    + S      F +L+S FWG   ++ + H T +G VA WW++    G T  + KR +TTSFGSIC G+L ++I++A  Q+  E ++S  +A  C+A C+L  + S+  YFNR+AF YV +YG  F ++G+    LF+ +G   +IND L+ NV  F S G   L A +G  +      +  +   + ++  +G + G+ +  I  S++DSAVAT+FVC+A+    LQ + PE +  +   W
Sbjct:    2 YQKNTSAMDPYGIPVGVPAPQGGT-AHLGPVQSMKPQA---------------------------------PATTGYRDWPFAVLFIGNVAAMIVLLVMWGIPVLQNTSSSTTSTKSTSSNNLLSDKEMRTVLIISGVMVVLSG--VLSLVMLSFMVRFASGMITFSLWFGVGLNVLFTIYAVIKKQYALAILGAIFVLLSLCYAFAVRDRIPFAAANLRCAAAAIKKHASTYCVAFSMLVLQIVWVAVWATAALGLANHLNEKDATSSTRGKPDGS----------------TCSISSECMSNKCSATYRCEAAGLKSASYVAYFFMLISFFWGMQTIKNVTHATVAGTVATWWYSTNSAGATGASLKRTLTTSFGSICLGSLIVAILQALRQLAEEARRS-GDAAACIAECILGCLQSLMEYFNRWAFVYVGIYGYKFTDAGKAVIGLFRDRGFDTIINDDLIGNVLLFASLGVGFLCAGLGLVYTYIDTANTTFNNSQIIIPVMGLIFGIGISIIPFSVIDSAVATIFVCFAEDPAALQTSHPEHFNELMTEW 504          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|325182072|emb|CCA16525.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 216.083 bits (549), Expect = 1.042e-58
Identity = 148/486 (30.45%), Postives = 244/486 (50.21%), Query Frame = 0
Query:  185 EPAATPYQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYG---------EFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCHVSSGPGFILFLLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAF-GLDGGYKAVLAG-VGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAW 659
            +PA   ++D     LF+ ++A I  L   WG   L+ D     ++    + S +N+  V + +   V  + A  ++   +K ++  AR +I   L   + +   VA        +   +L+ I A L L Y R VRNRI FA+ NL VA  AI   S    +S  +   Q+VW   W +A+VG     K     Q  N  G          F+C +++  ++ + +  C  N   +G+   + G    +       F LL+S++WG  V + I H T +G VA +W+     G +  + KRA TTS GSIC G+L ++I++     L +  + + +   C+A C+L  ++++  YFNR+AF YV +YG +F +SG+    LF+S+G   +IND L+ NV  F S    ++ A+VG   + A  GLD    +V+ G VG  +G+ +    LS++DS+VAT+FVC+A+      ++ P+LY  +   W
Sbjct:   36 QPATVGWRDWPFAVLFLLNVAAIIALMGVWGFDALDSDTKGEKSS---PLLSSKNTKTVVIIS--AVLAVAALAIALAFVKLLVAFARPMITFCLWFNVFISFAVAAYGFAIGSIVFGVLALIVALLNLWYARSVRNRIPFAAVNLQVAAAAISKHSTTYCISIALTIVQIVWVLAWAIAMVGVANQFKSDEPNQVSNRNGSSDGATCTSNFDCASNYCRMYSAGLRRCYGN-EPQGQGFKSSGSASAA------YFFLLLSLYWGLQVFKNISHTTVAGTVATFWYNSESSGASGASLKRACTTSLGSICMGSLLVAILQTLRS-LAQSAREEGSCGACIAECILGCLEALMEYFNRWAFVYVGIYGYTFTKSGKAVLDLFRSRGFDAIINDDLIGNVLGFASLAVGMICAVVGVILSNAISGLDFNNSSVVMGLVGLFIGIGIAMTPLSVIDSSVATIFVCFAEDPAAFMQSHPDLYQSLVAEW 508          
BLAST of EWM24998.1 vs. NCBI_GenBank
Match: gi|673023330|ref|XP_008865626.1| (hypothetical protein H310_03510 [Aphanomyces invadans] >gi|574478854|gb|ETW05849.1| hypothetical protein H310_03510 [Aphanomyces invadans])

HSP 1 Score: 213.386 bits (542), Expect = 6.087e-58
Identity = 161/501 (32.14%), Postives = 248/501 (49.50%), Query Frame = 0
Query:  185 EPAATP-YQDVWATFLFIAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQSVQNSSLVALTTGGTVCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLWLFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLVVFCQLVWQFVWTLALVGAL------LPQKGFTVTQGGNTYGEFECETDFSYLHDSYVCVCSHNGAEEGETTTALGRCHVSSGPGFILF---LLLVSMFWGSVVLQYIVHCTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQVLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESGRDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLDG------GYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPELYAGMDKAW----SEAMAA 665
            +PA+T  ++D     LF+ H+A I  +    G+P+L     +          S     +  +     V  + +A+++YL L+ VL  A+ +I  +L   + +  V A A        L I+   F   GLCY   V++RI FA  NLHVA  A+        V+ LV+  ++VW F+W +A +G L       P  G + + G +     ECE        S  C  S N   +      +        PG ++     +L+S++WG  V +Y++H T +G+VA W   G  Q     +F+RA TTSFGSIC GA  ++I++    +  E +K K N   C+A C+L ++  +  Y NR+AF YV MYG  F  +G+  F LF+ +GL+ ++ND LV      LS  + V+ AL+    A+A+ L G      G   ++  VGFV G  V  I LS+V+SAVATVFV +A+    L +  P+L+  +  AW     +AMAA
Sbjct:   21 QPASTSTWKDAPFAILFLLHVAAIVAVMVSLGVPMLNAAASSSQAGSTGSSPSFTPQDIGTIAVVAVVLAVVSAIVAYLLLQAVLKFAKQIIAYSLWGNVVMCFVFAAAGFAGGAAVLAIVFIFFGMCGLCYVHAVKSRIPFAGANLHVAAAAVTKNWSIFPVAILVMAIKVVWVFLWAVAFIGVLGNVTTESPNPGAS-SAGTSCSANSECE--------SGACDISRNSDSQKICQPFV--------PGQVVVAYCFMLLSLYWGVNVAKYVLHTTVAGMVATWLAAGDSQSAMSGSFRRASTTSFGSICLGAFLVAILQTLEALAKEAKK-KGNGAACIAECILLILRGVLMYINRWAFVYVGMYGFPFAHAGKAVFGLFQQRGLSAIVNDDLVDTAMGALSLVSGVICALL----ALAYSLVGMTSTFSGANIIVPLVGFVFGAGVTLIPLSVVNSAVATVFVFFAEDPAALSRTHPDLHNDLISAWRTAHPDAMAA 499          
The following BLAST results are available for this feature:
BLAST of EWM24998.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106633|gb|EWM24998.1|0.000e+0100.00Choline transporter [Nannochloropsis gaditana][more]
gi|553192695|ref|XP_005855625.1|1.808e-7931.74hypothetical protein NGA_0598810 [Nannochloropsis ... [more]
gi|585101254|gb|EWM21181.1|3.033e-7930.49Choline transporter [Nannochloropsis gaditana][more]
gi|553181489|ref|XP_005853576.1|6.729e-7734.26hypothetical protein NGA_0598820, partial [Nannoch... [more]
gi|1173955612|gb|OQS02555.1|5.702e-6832.33hypothetical protein THRCLA_05080 [Thraustotheca c... [more]
gi|698781847|ref|XP_009823967.1|2.588e-6331.76hypothetical protein H257_02143 [Aphanomyces astac... [more]
gi|669141374|ref|XP_008606249.1|5.447e-6129.04hypothetical protein SDRG_02440 [Saprolegnia dicli... [more]
gi|813141736|ref|XP_012199058.1|6.266e-6029.68hypothetical protein SPRG_19805 [Saprolegnia paras... [more]
gi|325182072|emb|CCA16525.1|1.042e-5830.45conserved hypothetical protein [Albugo laibachii N... [more]
gi|673023330|ref|XP_008865626.1|6.087e-5832.14hypothetical protein H310_03510 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5686rna5686Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications