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Properties
| Property Name | Value |
|---|
| Product | Choline transporter |
| Orig transcript id | gnl|cribi|Naga_100068g23.2422.mrna |
| Orig protein id | gnl|cribi|Naga_100068g23.2422 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:581178..583847 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5686 ID=rna5686|Name=rna5686|organism=Nannochloropsis gaditana|type=mRNA|length=276bp
ATGGGGAGGAACCAAATCTGCGTGAAACCTCTCCTGGTCTGTCGCTTTAA
ATTACACCACACAGCGTGGAATTGCGGGCGGCGGATGTACAGATGCAGTG
GAAGTAGACGAAATTGCAAGGGGCTTTGCAGAAAGAAAAGAGGCGCAAGA
GCTTGGAATAGGTGCAAAGCGTTACTTCTGAGATCCATCAGCATAATCGG
TGTTTTTGGCAGGGACAGGCGCATGTCGGATGGTATTTGCGTTGAAAGGA
AAAGCAAAGAATTCATCAAAGATTAG back to topprotein sequence of rna5686 >rna5686-protein ID=rna5686-protein|Name=rna5686|organism=Nannochloropsis gaditana|type=polypeptide|length=668bp
MDQTTNGLSVPSPYPVYDSQATHEGHSQEQQHQQSSTSTHQNGYRNRERQ
REDAQMGSNTESQQLHQSAGPGTLSPSGLPAIVAGESTASSMHDMGEDSY
VGEVNSNGAYNVEAYDLHTNAVDPYWKWGGEAKWEGGRPAFVDPAKKMTR
QSSSNLFGKQVSIGKLSTSVQDGATTVAGSEGEVEPAATPYQDVWATFLF
IAHLAIIFWLAFDWGLPLLEKDVDARDNAMQADVQSVQNSSLVALTTGGT
VCTLGAAVLSYLTLKCVLHHARALIRGALIATIAVQIVVAVAAMLASQLW
LFILSCIFAALGLCYYRLVRNRIAFASENLHVATQAIGHASGPVLVSFLV
VFCQLVWQFVWTLALVGALLPQKGFTVTQGGNTYGEFECETDFSYLHDSY
VCVCSHNGAEEGETTTALGRCHVSSGPGFILFLLLVSMFWGSVVLQYIVH
CTTSGVVAEWWFTGVRQGTTWPNFKRAVTTSFGSICFGALFLSIIRAAHQ
VLLEMQKSKNNACTCVASCLLRLVDSIATYFNRYAFTYVAMYGTSFVESG
RDAFALFKSKGLTVLINDQLVSNVFTFLSFGAAVLIALVGYGFAMAFGLD
GGYKAVLAGVGFVVGLLVCAIVLSIVDSAVATVFVCWADAKDVLQKNAPE
LYAGMDKAWSEAMAATEL back to topmRNA from alignment at CM002466.1:581178..583847- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5686 ID=rna5686|Name=rna5686|organism=Nannochloropsis gaditana|type=mRNA|length=2670bp|location=Sequence derived from alignment at CM002466.1:581178..583847- (Nannochloropsis gaditana)
ACACATTTACAATCGAAAGACGACAGTTGGTGAGCATTGGGTCTACCCAG
AGTACGACAAACGCTTCAATCCTTGTAATACATGGATCAGACCACCAATG
GTCTTTCTGTACCCAGTCCTTACCCCGTCTACGATTCTCAGGCAACGCAT
GAAGGCCACTCACAGGAGCAGCAGCATCAACAATCATCCACTTCAACGCA
TCAAAATGGATATAGGAACCGCGAGCGCCAACGTGAAGATGCACAAATGG
GCTCAAATACCGAATCCCAGCAGCTACACCAATCGGCCGGTCCTGGCACT
CTCAGCCCGTCCGGACTGCCCGCAATAGTAGCAGGAGAGAGTACTGCAAG
CAGCATGCATGACATGGGGGAGGATAGCTACGTGGGAGAAGTAAATAGCA
ATGGAGCGTATAATGTGGAGGCCTATGATCTACACACGAACGCCGTGGAT
CCCTACTGGAAGTGGGGAGGGGAAGCGAAATGGGAGGGGGGACGGCCAGC
CTTCGTGGATCCAGCCAAGAAAATGACCAGGCAAAGCTCGTCTAACCTGT
TCGGAAAACAGGTGTCCATCGGCAAGCTTTCGACAAGCGTCCAAGATGGG
GCAACGACCGTGGCAGGGTCCGAGGGAGAGGTGGAGCCAGCGGCAACGCC
CTACCAAGACGTGTGGGCCACGTTCCTCTTCATCGCCCACCTGGCCATCA
TCTTCTGGCTGGCATTCGACTGGGGCCTACCGTTGCTGGAGAAAGACGTC
GATGCCCGGGACAACGCCATGCAAGCTGACGTCCAGAGCGTGCAAAACTC
CTCGTTGGTAGCCTTAACGACCGGGGGCACGGTCTGCACGCTGGGGGCGG
CTGTCTTGAGCTACCTGACCCTCAAGTGTGTCCTTCACCATGCCCGCGCT
CTCATCCGGGGAGCGCTCATTGCCACCATCGCCGTGCAAATTGTCGTCGC
CGTCGCGGCCATGCTAGCTAGCCAGCTCTGGCTTTTCATTCTAAGCTGCA
TATTCGCGGCCCTGGGACTTTGCTACTACCGACTTGTCCGAAACCGGATT
GCTTTCGCCTCAGAAAATCTTCATGTTGCAACGCAAGCGATCGGACATGC
CTCAGGGCCAGTTCTGGTTTCATTTTTGGTTGTTTTTTGCCAGCTTGTGT
GGCAATTCGTGTGGACATTGGCCCTGGTGGGGGCCCTCCTCCCGCAGAAA
GGCTTCACAGTTACGCAAGGCGGGAACACATACGGAGAATTCGAATGCGA
AACTGATTTTTCTTATCTGCACGACTCGTACGTCTGCGTGTGCAGCCACA
ACGGGGCCGAGGAGGGAGAAACGACCACAGCCTTGGGTCGGTGCCACGTG
TCGTCAGGACCGGGCTTTATCCTCTTCTTGCTCTTGGTCTCCATGTTCTG
GGGGTCCGTGGTCCTTCAGTATATTGTGCACTGCACCACGTCGGGTGTAG
TAGCGGAGTGGTGGTTTACAGGTACGGTAAATAAAGGGAAAGGGAAGGAG
GAGAGAGAAGGAGTGTGGAGGGGTTCGCAAGCCTCGTTGCAGGGGAATCG
GTGTCACGATCTTTGTATGTCTTGACAGTGCTTGATTTTTCCGTTCGTTA
TTTCCTTTTAAATTCTGCTAGGTGTAAGACAAGGAACCACGTGGCCGAAC
TTCAAGCGGGCTGTTACCACCTCCTTCGGCTCTATCTGCTTTGGCGCTCT
TTTCCTCTCCATTATTCGTGCTGCGCATCAAGTGCTTCTTGAGATGCAAA
AGTCGAAGAACAACGCGTGCACCTGCGTTGCCAGCTGCCTTTTGAGGCTG
GTGGATAGCATCGCGACGTACTTTAATCGGTACGCTTTCACATACGTAGC
CATGTATGGCACGTCCTTCGTAGAAAGCGGGAGAGACGCCTTTGCTTTGT
TCAAGAGCAAGGGGCTCACGGTTCTGATCAATGATCAACTCGTCTCGAAT
GTATTTACATTCCTGTCATTCGGTGCGGCGGTATTGATCGCTCTTGTTGG
GTACGGATTTGCCATGGCATTTGGATTGGATGGAGGATATAAGGCCGTGT
TGGCAGGGGTGGGCTTTGTGGTCGGATTACTCGTCTGTGCAATTGTCTTG
AGCATCGTGGACTCGGCTGTAGCTACAGTCTTCGTGTGTTGGGCTGACGC
GAAGGATGTCTTGCAAAAAAATGCACCAGAGCTGTATGCAGGGATGGACA
AAGCGTGGAGCGAGGCAATGGCGGCAACAGAATTGTAAATTGAATTGATG
AGTTGGATATGACTATTGCGCTTATTATGAGCGAAAAGATTTTGTTACAT
ATACGAATGAATGTGTGGCTATGCGGGCACGCGAATGTAAAACATGCGCG
CGCAGCACGGCGCAGCATTTTCGTGCATTTATTGAGAGAAACGGGCGAAT
GAAACCGATTAAGTTGTGAAAAGGGACTAGATATTGTCGAGAAATCGCTG
TAACTGATCAAGTAGGTGAGATGCGGTGTGCGCGAGAGCGGGCGTCAGAT
TCTGAACCATCCGAGTCATTTTGAATCTAATGTAAAACGGTAAAAGCTGT
GGCGCACTGTCAGGCGTTGGCTAATCTTTGATGAATTCTTTGCTTTTCCT
TTCAACGCAAATACCATCCGACATGCGCCTGTCCCTGCCAAAAACACCGA
TTATGCTGATGGATCTCAGA back to topCoding sequence (CDS) from alignment at CM002466.1:581178..583847- >rna5686 ID=rna5686|Name=rna5686|organism=Nannochloropsis gaditana|type=CDS|length=4014bp|location=Sequence derived from alignment at CM002466.1:581178..583847- (Nannochloropsis gaditana)
GTGTAAGACAAGGAACCACGTGGCCGAACTTCAAGCGGGCTGTTACCACC
TCCTTCGGCTCTATCTGCTTTGGCGCTCTTTTCCTCTCCATTATTCGTGC
TGCGCATCAAGTGCTTCTTGAGATGCAAAAGTCGAAGAACAACGCGTGCA
CCTGCGTTGCCAGCTGCCTTTTGAGGCTGGTGGATAGCATCGCGACGTAC
TTTAATCGGTACGCTTTCACATACGTAGCCATGTATGGCACGTCCTTCGT
AGAAAGCGGGAGAGACGCCTTTGCTTTGTTCAAGAGCAAGGGGCTCACGG
TTCTGATCAATGATCAACTCGTCTCGAATGTATTTACATTCCTGTCATTC
GGTGCGGCGGTATTGATCGCTCTTGTTGGGTACGGATTTGCCATGGCATT
TGGATTGGATGGAGGATATAAGGCCGTGTTGGCAGGGGTGGGCTTTGTGG
TCGGATTACTCGTCTGTGCAATTGTCTTGAGCATCGTGGACTCGGCTGTA
GCTACAGTCTTCGTGTGTTGGGCTGACGCGAAGGATGTCTTGCAAAAAAA
TGCACCAGAGCTGTATGCAGGGATGGACAAAGCGTGGAGCGAGGCAATGG
CGGCAACAGAATTGTAAATGGATCAGACCACCAATGGTCTTTCTGTACCC
AGTCCTTACCCCGTCTACGATTCTCAGGCAACGCATGAAGGCCACTCACA
GGAGCAGCAGCATCAACAATCATCCACTTCAACGCATCAAAATGGATATA
GGAACCGCGAGCGCCAACGTGAAGATGCACAAATGGGCTCAAATACCGAA
TCCCAGCAGCTACACCAATCGGCCGGTCCTGGCACTCTCAGCCCGTCCGG
ACTGCCCGCAATAGTAGCAGGAGAGAGTACTGCAAGCAGCATGCATGACA
TGGGGGAGGATAGCTACGTGGGAGAAGTAAATAGCAATGGAGCGTATAAT
GTGGAGGCCTATGATCTACACACGAACGCCGTGGATCCCTACTGGAAGTG
GGGAGGGGAAGCGAAATGGGAGGGGGGACGGCCAGCCTTCGTGGATCCAG
CCAAGAAAATGACCAGGCAAAGCTCGTCTAACCTGTTCGGAAAACAGGTG
TCCATCGGCAAGCTTTCGACAAGCGTCCAAGATGGGGCAACGACCGTGGC
AGGGTCCGAGGGAGAGGTGGAGCCAGCGGCAACGCCCTACCAAGACGTGT
GGGCCACGTTCCTCTTCATCGCCCACCTGGCCATCATCTTCTGGCTGGCA
TTCGACTGGGGCCTACCGTTGCTGGAGAAAGACGTCGATGCCCGGGACAA
CGCCATGCAAGCTGACGTCCAGAGCGTGCAAAACTCCTCGTTGGTAGCCT
TAACGACCGGGGGCACGGTCTGCACGCTGGGGGCGGCTGTCTTGAGCTAC
CTGACCCTCAAGTGTGTCCTTCACCATGCCCGCGCTCTCATCCGGGGAGC
GCTCATTGCCACCATCGCCGTGCAAATTGTCGTCGCCGTCGCGGCCATGC
TAGCTAGCCAGCTCTGGCTTTTCATTCTAAGCTGCATATTCGCGGCCCTG
GGACTTTGCTACTACCGACTTGTCCGAAACCGGATTGCTTTCGCCTCAGA
AAATCTTCATGTTGCAACGCAAGCGATCGGACATGCCTCAGGGCCAGTTC
TGGTTTCATTTTTGGTTGTTTTTTGCCAGCTTGTGTGGCAATTCGTGTGG
ACATTGGCCCTGGTGGGGGCCCTCCTCCCGCAGAAAGGCTTCACAGTTAC
GCAAGGCGGGAACACATACGGAGAATTCGAATGCGAAACTGATTTTTCTT
ATCTGCACGACTCGTACGTCTGCGTGTGCAGCCACAACGGGGCCGAGGAG
GGAGAAACGACCACAGCCTTGGGTCGGTGCCACGTGTCGTCAGGACCGGG
CTTTATCCTCTTCTTGCTCTTGGTCTCCATGTTCTGGGGGTCCGTGGTCC
TTCAGTATATTGTGCACTGCACCACGTCGGGTGTAGTAGCGGAGTGGTGG
TTTACAGGTGTAAGACAAGGAACCACGTGGCCGAACTTCAAGCGGGCTGT
TACCACCTCCTTCGGCTCTATCTGCTTTGGCGCTCTTTTCCTCTCCATTA
TTCGTGCTGCGCATCAAGTGCTTCTTGAGATGCAAAAGTCGAAGAACAAC
GCGTGCACCTGCGTTGCCAGCTGCCTTTTGAGGCTGGTGGATAGCATCGC
GACGTACTTTAATCGGTACGCTTTCACATACGTAGCCATGTATGGCACGT
CCTTCGTAGAAAGCGGGAGAGACGCCTTTGCTTTGTTCAAGAGCAAGGGG
CTCACGGTTCTGATCAATGATCAACTCGTCTCGAATGTATTTACATTCCT
GTCATTCGGTGCGGCGGTATTGATCGCTCTTGTTGGGTACGGATTTGCCA
TGGCATTTGGATTGGATGGAGGATATAAGGCCGTGTTGGCAGGGGTGGGC
TTTGTGGTCGGATTACTCGTCTGTGCAATTGTCTTGAGCATCGTGGACTC
GGCTGTAGCTACAGTCTTCGTGTGTTGGGCTGACGCGAAGGATGTCTTGC
AAAAAAATGCACCAGAGCTGTATGCAGGGATGGACAAAGCGTGGAGCGAG
GCAATGGCGGCAACAGAATTGTAAATGGATCAGACCACCAATGGTCTTTC
TGTACCCAGTCCTTACCCCGTCTACGATTCTCAGGCAACGCATGAAGGCC
ACTCACAGGAGCAGCAGCATCAACAATCATCCACTTCAACGCATCAAAAT
GGATATAGGAACCGCGAGCGCCAACGTGAAGATGCACAAATGGGCTCAAA
TACCGAATCCCAGCAGCTACACCAATCGGCCGGTCCTGGCACTCTCAGCC
CGTCCGGACTGCCCGCAATAGTAGCAGGAGAGAGTACTGCAAGCAGCATG
CATGACATGGGGGAGGATAGCTACGTGGGAGAAGTAAATAGCAATGGAGC
GTATAATGTGGAGGCCTATGATCTACACACGAACGCCGTGGATCCCTACT
GGAAGTGGGGAGGGGAAGCGAAATGGGAGGGGGGACGGCCAGCCTTCGTG
GATCCAGCCAAGAAAATGACCAGGCAAAGCTCGTCTAACCTGTTCGGAAA
ACAGGTGTCCATCGGCAAGCTTTCGACAAGCGTCCAAGATGGGGCAACGA
CCGTGGCAGGGTCCGAGGGAGAGGTGGAGCCAGCGGCAACGCCCTACCAA
GACGTGTGGGCCACGTTCCTCTTCATCGCCCACCTGGCCATCATCTTCTG
GCTGGCATTCGACTGGGGCCTACCGTTGCTGGAGAAAGACGTCGATGCCC
GGGACAACGCCATGCAAGCTGACGTCCAGAGCGTGCAAAACTCCTCGTTG
GTAGCCTTAACGACCGGGGGCACGGTCTGCACGCTGGGGGCGGCTGTCTT
GAGCTACCTGACCCTCAAGTGTGTCCTTCACCATGCCCGCGCTCTCATCC
GGGGAGCGCTCATTGCCACCATCGCCGTGCAAATTGTCGTCGCCGTCGCG
GCCATGCTAGCTAGCCAGCTCTGGCTTTTCATTCTAAGCTGCATATTCGC
GGCCCTGGGACTTTGCTACTACCGACTTGTCCGAAACCGGATTGCTTTCG
CCTCAGAAAATCTTCATGTTGCAACGCAAGCGATCGGACATGCCTCAGGG
CCAGTTCTGGTTTCATTTTTGGTTGTTTTTTGCCAGCTTGTGTGGCAATT
CGTGTGGACATTGGCCCTGGTGGGGGCCCTCCTCCCGCAGAAAGGCTTCA
CAGTTACGCAAGGCGGGAACACATACGGAGAATTCGAATGCGAAACTGAT
TTTTCTTATCTGCACGACTCGTACGTCTGCGTGTGCAGCCACAACGGGGC
CGAGGAGGGAGAAACGACCACAGCCTTGGGTCGGTGCCACGTGTCGTCAG
GACCGGGCTTTATCCTCTTCTTGCTCTTGGTCTCCATGTTCTGGGGGTCC
GTGGTCCTTCAGTATATTGTGCACTGCACCACGTCGGGTGTAGTAGCGGA
GTGGTGGTTTACAG back to top
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